Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2245 and PfGW456L13_2246 are separated by 106 nucleotides PfGW456L13_2246 and PfGW456L13_2247 are separated by 422 nucleotides
PfGW456L13_2245 - Spermidine synthase (EC 2.5.1.16), at 2,458,386 to 2,459,141
_2245
PfGW456L13_2246 - Enoyl-CoA hydratase (EC 4.2.1.17), at 2,459,248 to 2,460,039
_2246
PfGW456L13_2247 - DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13), at 2,460,462 to 2,462,135
_2247
Position (kb)
2459
2460
2461 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2458.271 kb on + strand at 2458.272 kb on - strand at 2458.282 kb on + strand at 2458.336 kb on + strand at 2458.336 kb on + strand at 2458.337 kb on - strand at 2458.337 kb on - strand at 2458.337 kb on - strand at 2458.337 kb on - strand at 2458.348 kb on + strand at 2458.349 kb on - strand at 2458.349 kb on - strand at 2458.349 kb on - strand at 2458.424 kb on - strand at 2458.539 kb on + strand, within PfGW456L13_2245 at 2458.540 kb on - strand, within PfGW456L13_2245 at 2458.540 kb on - strand, within PfGW456L13_2245 at 2458.540 kb on - strand, within PfGW456L13_2245 at 2458.545 kb on + strand, within PfGW456L13_2245 at 2458.546 kb on - strand, within PfGW456L13_2245 at 2458.546 kb on - strand, within PfGW456L13_2245 at 2458.546 kb on - strand, within PfGW456L13_2245 at 2458.546 kb on - strand, within PfGW456L13_2245 at 2458.546 kb on - strand, within PfGW456L13_2245 at 2458.681 kb on + strand, within PfGW456L13_2245 at 2458.681 kb on + strand, within PfGW456L13_2245 at 2458.681 kb on + strand, within PfGW456L13_2245 at 2458.694 kb on - strand, within PfGW456L13_2245 at 2458.713 kb on + strand, within PfGW456L13_2245 at 2458.713 kb on + strand, within PfGW456L13_2245 at 2458.743 kb on + strand, within PfGW456L13_2245 at 2458.743 kb on + strand, within PfGW456L13_2245 at 2458.743 kb on + strand, within PfGW456L13_2245 at 2458.743 kb on + strand, within PfGW456L13_2245 at 2458.743 kb on + strand, within PfGW456L13_2245 at 2458.743 kb on + strand, within PfGW456L13_2245 at 2458.743 kb on + strand, within PfGW456L13_2245 at 2458.743 kb on + strand, within PfGW456L13_2245 at 2458.815 kb on + strand, within PfGW456L13_2245 at 2458.815 kb on + strand, within PfGW456L13_2245 at 2458.815 kb on + strand, within PfGW456L13_2245 at 2458.815 kb on + strand, within PfGW456L13_2245 at 2458.816 kb on - strand, within PfGW456L13_2245 at 2458.816 kb on - strand, within PfGW456L13_2245 at 2458.817 kb on + strand, within PfGW456L13_2245 at 2458.818 kb on - strand, within PfGW456L13_2245 at 2458.818 kb on - strand, within PfGW456L13_2245 at 2458.818 kb on - strand, within PfGW456L13_2245 at 2458.951 kb on + strand, within PfGW456L13_2245 at 2458.951 kb on + strand, within PfGW456L13_2245 at 2458.952 kb on - strand, within PfGW456L13_2245 at 2458.966 kb on - strand, within PfGW456L13_2245 at 2459.241 kb on + strand at 2459.241 kb on + strand at 2459.241 kb on + strand at 2459.241 kb on + strand at 2459.241 kb on + strand at 2459.241 kb on + strand at 2459.241 kb on + strand at 2459.241 kb on + strand at 2459.241 kb on + strand at 2459.241 kb on + strand at 2459.241 kb on + strand at 2459.242 kb on - strand at 2459.242 kb on - strand at 2459.242 kb on - strand at 2459.242 kb on - strand at 2459.335 kb on + strand, within PfGW456L13_2246 at 2459.336 kb on - strand, within PfGW456L13_2246 at 2459.336 kb on - strand, within PfGW456L13_2246 at 2459.494 kb on + strand, within PfGW456L13_2246 at 2459.495 kb on - strand, within PfGW456L13_2246 at 2459.495 kb on - strand, within PfGW456L13_2246 at 2459.495 kb on - strand, within PfGW456L13_2246 at 2459.913 kb on - strand, within PfGW456L13_2246 at 2459.913 kb on - strand, within PfGW456L13_2246 at 2459.980 kb on + strand at 2459.980 kb on + strand at 2459.980 kb on + strand at 2459.980 kb on + strand at 2459.981 kb on - strand at 2459.981 kb on - strand at 2459.981 kb on - strand at 2459.981 kb on - strand at 2459.981 kb on - strand at 2460.091 kb on - strand at 2460.175 kb on + strand at 2460.176 kb on - strand at 2460.187 kb on + strand at 2460.187 kb on + strand at 2460.188 kb on - strand at 2460.188 kb on - strand at 2460.239 kb on + strand at 2460.239 kb on + strand at 2460.271 kb on + strand at 2460.449 kb on + strand at 2460.449 kb on + strand at 2460.449 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 2,458,271 + -0.8 2,458,272 - -1.4 2,458,282 + +0.3 2,458,336 + -2.0 2,458,336 + +0.1 2,458,337 - -0.3 2,458,337 - -0.8 2,458,337 - -1.1 2,458,337 - -0.9 2,458,348 + +1.4 2,458,349 - -0.2 2,458,349 - +0.9 2,458,349 - -0.7 2,458,424 - -0.2 2,458,539 + PfGW456L13_2245 0.20 -0.3 2,458,540 - PfGW456L13_2245 0.20 +1.3 2,458,540 - PfGW456L13_2245 0.20 -0.1 2,458,540 - PfGW456L13_2245 0.20 -1.3 2,458,545 + PfGW456L13_2245 0.21 -0.1 2,458,546 - PfGW456L13_2245 0.21 +0.3 2,458,546 - PfGW456L13_2245 0.21 +1.3 2,458,546 - PfGW456L13_2245 0.21 +0.6 2,458,546 - PfGW456L13_2245 0.21 +0.8 2,458,546 - PfGW456L13_2245 0.21 +0.5 2,458,681 + PfGW456L13_2245 0.39 -1.0 2,458,681 + PfGW456L13_2245 0.39 +1.1 2,458,681 + PfGW456L13_2245 0.39 +1.0 2,458,694 - PfGW456L13_2245 0.41 +0.4 2,458,713 + PfGW456L13_2245 0.43 +0.1 2,458,713 + PfGW456L13_2245 0.43 +0.3 2,458,743 + PfGW456L13_2245 0.47 -0.0 2,458,743 + PfGW456L13_2245 0.47 -0.1 2,458,743 + PfGW456L13_2245 0.47 -0.6 2,458,743 + PfGW456L13_2245 0.47 -0.1 2,458,743 + PfGW456L13_2245 0.47 -0.6 2,458,743 + PfGW456L13_2245 0.47 +0.9 2,458,743 + PfGW456L13_2245 0.47 -0.8 2,458,743 + PfGW456L13_2245 0.47 +0.2 2,458,815 + PfGW456L13_2245 0.57 +0.6 2,458,815 + PfGW456L13_2245 0.57 +0.5 2,458,815 + PfGW456L13_2245 0.57 -0.8 2,458,815 + PfGW456L13_2245 0.57 -0.5 2,458,816 - PfGW456L13_2245 0.57 +1.0 2,458,816 - PfGW456L13_2245 0.57 +0.5 2,458,817 + PfGW456L13_2245 0.57 -0.3 2,458,818 - PfGW456L13_2245 0.57 -0.7 2,458,818 - PfGW456L13_2245 0.57 +2.4 2,458,818 - PfGW456L13_2245 0.57 -0.4 2,458,951 + PfGW456L13_2245 0.75 -0.9 2,458,951 + PfGW456L13_2245 0.75 -0.9 2,458,952 - PfGW456L13_2245 0.75 -0.9 2,458,966 - PfGW456L13_2245 0.77 -0.0 2,459,241 + -0.2 2,459,241 + -0.4 2,459,241 + +0.3 2,459,241 + +0.2 2,459,241 + -0.1 2,459,241 + +0.1 2,459,241 + +0.6 2,459,241 + -1.3 2,459,241 + +0.1 2,459,241 + -0.1 2,459,241 + -1.1 2,459,242 - -0.4 2,459,242 - -0.3 2,459,242 - -0.1 2,459,242 - +0.2 2,459,335 + PfGW456L13_2246 0.11 -0.8 2,459,336 - PfGW456L13_2246 0.11 -0.5 2,459,336 - PfGW456L13_2246 0.11 -0.7 2,459,494 + PfGW456L13_2246 0.31 -1.2 2,459,495 - PfGW456L13_2246 0.31 +0.4 2,459,495 - PfGW456L13_2246 0.31 +0.2 2,459,495 - PfGW456L13_2246 0.31 +0.1 2,459,913 - PfGW456L13_2246 0.84 -0.6 2,459,913 - PfGW456L13_2246 0.84 -0.4 2,459,980 + +0.3 2,459,980 + +0.0 2,459,980 + +0.5 2,459,980 + -0.0 2,459,981 - -0.1 2,459,981 - -0.2 2,459,981 - -0.2 2,459,981 - -0.3 2,459,981 - -0.3 2,460,091 - -0.8 2,460,175 + -1.0 2,460,176 - -0.5 2,460,187 + -0.2 2,460,187 + +0.4 2,460,188 - +0.1 2,460,188 - -0.3 2,460,239 + -0.2 2,460,239 + +0.1 2,460,271 + -0.8 2,460,449 + +0.5 2,460,449 + +0.3 2,460,449 + +0.4
Or see this region's nucleotide sequence