Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2246

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2245 and PfGW456L13_2246 are separated by 106 nucleotidesPfGW456L13_2246 and PfGW456L13_2247 are separated by 422 nucleotides PfGW456L13_2245 - Spermidine synthase (EC 2.5.1.16), at 2,458,386 to 2,459,141 _2245 PfGW456L13_2246 - Enoyl-CoA hydratase (EC 4.2.1.17), at 2,459,248 to 2,460,039 _2246 PfGW456L13_2247 - DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13), at 2,460,462 to 2,462,135 _2247 Position (kb) 2459 2460 2461Strain fitness (log2 ratio) -2 -1 0 1 2at 2458.271 kb on + strandat 2458.272 kb on - strandat 2458.282 kb on + strandat 2458.336 kb on + strandat 2458.336 kb on + strandat 2458.337 kb on - strandat 2458.337 kb on - strandat 2458.337 kb on - strandat 2458.337 kb on - strandat 2458.348 kb on + strandat 2458.349 kb on - strandat 2458.349 kb on - strandat 2458.349 kb on - strandat 2458.424 kb on - strandat 2458.539 kb on + strand, within PfGW456L13_2245at 2458.540 kb on - strand, within PfGW456L13_2245at 2458.540 kb on - strand, within PfGW456L13_2245at 2458.540 kb on - strand, within PfGW456L13_2245at 2458.545 kb on + strand, within PfGW456L13_2245at 2458.546 kb on - strand, within PfGW456L13_2245at 2458.546 kb on - strand, within PfGW456L13_2245at 2458.546 kb on - strand, within PfGW456L13_2245at 2458.546 kb on - strand, within PfGW456L13_2245at 2458.546 kb on - strand, within PfGW456L13_2245at 2458.681 kb on + strand, within PfGW456L13_2245at 2458.681 kb on + strand, within PfGW456L13_2245at 2458.681 kb on + strand, within PfGW456L13_2245at 2458.694 kb on - strand, within PfGW456L13_2245at 2458.713 kb on + strand, within PfGW456L13_2245at 2458.713 kb on + strand, within PfGW456L13_2245at 2458.743 kb on + strand, within PfGW456L13_2245at 2458.743 kb on + strand, within PfGW456L13_2245at 2458.743 kb on + strand, within PfGW456L13_2245at 2458.743 kb on + strand, within PfGW456L13_2245at 2458.743 kb on + strand, within PfGW456L13_2245at 2458.743 kb on + strand, within PfGW456L13_2245at 2458.743 kb on + strand, within PfGW456L13_2245at 2458.743 kb on + strand, within PfGW456L13_2245at 2458.815 kb on + strand, within PfGW456L13_2245at 2458.815 kb on + strand, within PfGW456L13_2245at 2458.815 kb on + strand, within PfGW456L13_2245at 2458.815 kb on + strand, within PfGW456L13_2245at 2458.816 kb on - strand, within PfGW456L13_2245at 2458.816 kb on - strand, within PfGW456L13_2245at 2458.817 kb on + strand, within PfGW456L13_2245at 2458.818 kb on - strand, within PfGW456L13_2245at 2458.818 kb on - strand, within PfGW456L13_2245at 2458.818 kb on - strand, within PfGW456L13_2245at 2458.951 kb on + strand, within PfGW456L13_2245at 2458.951 kb on + strand, within PfGW456L13_2245at 2458.952 kb on - strand, within PfGW456L13_2245at 2458.966 kb on - strand, within PfGW456L13_2245at 2459.241 kb on + strandat 2459.241 kb on + strandat 2459.241 kb on + strandat 2459.241 kb on + strandat 2459.241 kb on + strandat 2459.241 kb on + strandat 2459.241 kb on + strandat 2459.241 kb on + strandat 2459.241 kb on + strandat 2459.241 kb on + strandat 2459.241 kb on + strandat 2459.242 kb on - strandat 2459.242 kb on - strandat 2459.242 kb on - strandat 2459.242 kb on - strandat 2459.335 kb on + strand, within PfGW456L13_2246at 2459.336 kb on - strand, within PfGW456L13_2246at 2459.336 kb on - strand, within PfGW456L13_2246at 2459.494 kb on + strand, within PfGW456L13_2246at 2459.495 kb on - strand, within PfGW456L13_2246at 2459.495 kb on - strand, within PfGW456L13_2246at 2459.495 kb on - strand, within PfGW456L13_2246at 2459.913 kb on - strand, within PfGW456L13_2246at 2459.913 kb on - strand, within PfGW456L13_2246at 2459.980 kb on + strandat 2459.980 kb on + strandat 2459.980 kb on + strandat 2459.980 kb on + strandat 2459.981 kb on - strandat 2459.981 kb on - strandat 2459.981 kb on - strandat 2459.981 kb on - strandat 2459.981 kb on - strandat 2460.091 kb on - strandat 2460.175 kb on + strandat 2460.176 kb on - strandat 2460.187 kb on + strandat 2460.187 kb on + strandat 2460.188 kb on - strandat 2460.188 kb on - strandat 2460.239 kb on + strandat 2460.239 kb on + strandat 2460.271 kb on + strandat 2460.449 kb on + strandat 2460.449 kb on + strandat 2460.449 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,458,271 + -0.8
2,458,272 - -1.4
2,458,282 + +0.3
2,458,336 + -2.0
2,458,336 + +0.1
2,458,337 - -0.3
2,458,337 - -0.8
2,458,337 - -1.1
2,458,337 - -0.9
2,458,348 + +1.4
2,458,349 - -0.2
2,458,349 - +0.9
2,458,349 - -0.7
2,458,424 - -0.2
2,458,539 + PfGW456L13_2245 0.20 -0.3
2,458,540 - PfGW456L13_2245 0.20 +1.3
2,458,540 - PfGW456L13_2245 0.20 -0.1
2,458,540 - PfGW456L13_2245 0.20 -1.3
2,458,545 + PfGW456L13_2245 0.21 -0.1
2,458,546 - PfGW456L13_2245 0.21 +0.3
2,458,546 - PfGW456L13_2245 0.21 +1.3
2,458,546 - PfGW456L13_2245 0.21 +0.6
2,458,546 - PfGW456L13_2245 0.21 +0.8
2,458,546 - PfGW456L13_2245 0.21 +0.5
2,458,681 + PfGW456L13_2245 0.39 -1.0
2,458,681 + PfGW456L13_2245 0.39 +1.1
2,458,681 + PfGW456L13_2245 0.39 +1.0
2,458,694 - PfGW456L13_2245 0.41 +0.4
2,458,713 + PfGW456L13_2245 0.43 +0.1
2,458,713 + PfGW456L13_2245 0.43 +0.3
2,458,743 + PfGW456L13_2245 0.47 -0.0
2,458,743 + PfGW456L13_2245 0.47 -0.1
2,458,743 + PfGW456L13_2245 0.47 -0.6
2,458,743 + PfGW456L13_2245 0.47 -0.1
2,458,743 + PfGW456L13_2245 0.47 -0.6
2,458,743 + PfGW456L13_2245 0.47 +0.9
2,458,743 + PfGW456L13_2245 0.47 -0.8
2,458,743 + PfGW456L13_2245 0.47 +0.2
2,458,815 + PfGW456L13_2245 0.57 +0.6
2,458,815 + PfGW456L13_2245 0.57 +0.5
2,458,815 + PfGW456L13_2245 0.57 -0.8
2,458,815 + PfGW456L13_2245 0.57 -0.5
2,458,816 - PfGW456L13_2245 0.57 +1.0
2,458,816 - PfGW456L13_2245 0.57 +0.5
2,458,817 + PfGW456L13_2245 0.57 -0.3
2,458,818 - PfGW456L13_2245 0.57 -0.7
2,458,818 - PfGW456L13_2245 0.57 +2.4
2,458,818 - PfGW456L13_2245 0.57 -0.4
2,458,951 + PfGW456L13_2245 0.75 -0.9
2,458,951 + PfGW456L13_2245 0.75 -0.9
2,458,952 - PfGW456L13_2245 0.75 -0.9
2,458,966 - PfGW456L13_2245 0.77 -0.0
2,459,241 + -0.2
2,459,241 + -0.4
2,459,241 + +0.3
2,459,241 + +0.2
2,459,241 + -0.1
2,459,241 + +0.1
2,459,241 + +0.6
2,459,241 + -1.3
2,459,241 + +0.1
2,459,241 + -0.1
2,459,241 + -1.1
2,459,242 - -0.4
2,459,242 - -0.3
2,459,242 - -0.1
2,459,242 - +0.2
2,459,335 + PfGW456L13_2246 0.11 -0.8
2,459,336 - PfGW456L13_2246 0.11 -0.5
2,459,336 - PfGW456L13_2246 0.11 -0.7
2,459,494 + PfGW456L13_2246 0.31 -1.2
2,459,495 - PfGW456L13_2246 0.31 +0.4
2,459,495 - PfGW456L13_2246 0.31 +0.2
2,459,495 - PfGW456L13_2246 0.31 +0.1
2,459,913 - PfGW456L13_2246 0.84 -0.6
2,459,913 - PfGW456L13_2246 0.84 -0.4
2,459,980 + +0.3
2,459,980 + +0.0
2,459,980 + +0.5
2,459,980 + -0.0
2,459,981 - -0.1
2,459,981 - -0.2
2,459,981 - -0.2
2,459,981 - -0.3
2,459,981 - -0.3
2,460,091 - -0.8
2,460,175 + -1.0
2,460,176 - -0.5
2,460,187 + -0.2
2,460,187 + +0.4
2,460,188 - +0.1
2,460,188 - -0.3
2,460,239 + -0.2
2,460,239 + +0.1
2,460,271 + -0.8
2,460,449 + +0.5
2,460,449 + +0.3
2,460,449 + +0.4

Or see this region's nucleotide sequence