Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2224

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2223 and PfGW456L13_2224 are separated by 87 nucleotidesPfGW456L13_2224 and PfGW456L13_2225 are separated by 187 nucleotidesPfGW456L13_2225 and PfGW456L13_2226 are separated by 208 nucleotides PfGW456L13_2223 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 2,441,151 to 2,441,438 _2223 PfGW456L13_2224 - 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54), at 2,441,526 to 2,442,602 _2224 PfGW456L13_2225 - FIG00958794: hypothetical protein, at 2,442,790 to 2,443,074 _2225 PfGW456L13_2226 - Possible periplasmic thiredoxin, at 2,443,283 to 2,443,618 _2226 Position (kb) 2441 2442 2443Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2440.534 kb on + strandat 2440.535 kb on - strandat 2440.535 kb on - strandat 2440.535 kb on - strandat 2440.537 kb on + strandat 2440.538 kb on - strandat 2440.538 kb on - strandat 2440.538 kb on - strandat 2440.541 kb on + strandat 2440.541 kb on + strandat 2440.541 kb on + strandat 2440.541 kb on + strandat 2440.541 kb on + strandat 2440.542 kb on - strandat 2440.542 kb on - strandat 2440.542 kb on - strandat 2440.542 kb on - strandat 2440.542 kb on - strandat 2440.542 kb on - strandat 2440.542 kb on - strandat 2440.545 kb on + strandat 2440.545 kb on + strandat 2440.545 kb on + strandat 2440.545 kb on + strandat 2440.545 kb on + strandat 2440.546 kb on - strandat 2440.546 kb on - strandat 2440.546 kb on - strandat 2440.546 kb on - strandat 2440.546 kb on - strandat 2440.546 kb on - strandat 2440.575 kb on + strandat 2440.575 kb on + strandat 2440.576 kb on - strandat 2440.576 kb on - strandat 2440.579 kb on + strandat 2440.579 kb on + strandat 2440.579 kb on + strandat 2440.579 kb on + strandat 2440.579 kb on + strandat 2440.579 kb on + strandat 2440.580 kb on - strandat 2440.580 kb on - strandat 2440.580 kb on - strandat 2440.580 kb on - strandat 2440.580 kb on - strandat 2440.580 kb on - strandat 2440.580 kb on - strandat 2440.583 kb on - strandat 2440.583 kb on - strandat 2440.589 kb on + strandat 2440.589 kb on + strandat 2440.590 kb on - strandat 2440.590 kb on - strandat 2440.595 kb on + strandat 2440.595 kb on + strandat 2440.595 kb on + strandat 2440.595 kb on + strandat 2440.595 kb on + strandat 2440.596 kb on - strandat 2440.596 kb on - strandat 2440.596 kb on - strandat 2440.598 kb on + strandat 2440.598 kb on + strandat 2440.599 kb on - strandat 2440.599 kb on - strandat 2440.599 kb on - strandat 2440.603 kb on - strandat 2440.638 kb on - strandat 2440.666 kb on + strandat 2440.776 kb on + strandat 2440.776 kb on + strandat 2440.777 kb on - strandat 2440.827 kb on - strandat 2440.853 kb on - strandat 2440.871 kb on + strandat 2440.871 kb on + strandat 2440.872 kb on - strandat 2440.872 kb on - strandat 2440.872 kb on - strandat 2440.872 kb on - strandat 2441.010 kb on - strandat 2441.012 kb on + strandat 2441.012 kb on + strandat 2441.012 kb on + strandat 2441.012 kb on + strandat 2441.012 kb on + strandat 2441.012 kb on + strandat 2441.012 kb on + strandat 2441.012 kb on + strandat 2441.013 kb on - strandat 2441.013 kb on - strandat 2441.013 kb on - strandat 2441.013 kb on - strandat 2441.013 kb on - strandat 2441.013 kb on - strandat 2441.013 kb on - strandat 2441.013 kb on - strandat 2441.018 kb on + strandat 2441.018 kb on + strandat 2441.018 kb on + strandat 2441.019 kb on - strandat 2441.019 kb on - strandat 2441.019 kb on - strandat 2441.082 kb on + strandat 2441.082 kb on + strandat 2441.082 kb on + strandat 2441.082 kb on + strandat 2441.082 kb on + strandat 2441.082 kb on + strandat 2441.082 kb on + strandat 2441.082 kb on + strandat 2441.082 kb on + strandat 2441.082 kb on + strandat 2441.082 kb on + strandat 2441.082 kb on + strandat 2441.082 kb on + strandat 2441.082 kb on + strandat 2441.082 kb on + strandat 2441.083 kb on - strandat 2441.083 kb on - strandat 2441.083 kb on - strandat 2441.083 kb on - strandat 2441.083 kb on - strandat 2441.083 kb on - strandat 2441.112 kb on - strandat 2441.117 kb on - strandat 2441.117 kb on - strandat 2441.146 kb on + strandat 2441.146 kb on + strandat 2441.146 kb on + strandat 2441.146 kb on + strandat 2441.147 kb on - strandat 2441.147 kb on - strandat 2441.227 kb on - strand, within PfGW456L13_2223at 2441.227 kb on - strand, within PfGW456L13_2223at 2441.227 kb on - strand, within PfGW456L13_2223at 2441.235 kb on + strand, within PfGW456L13_2223at 2441.235 kb on + strand, within PfGW456L13_2223at 2441.235 kb on + strand, within PfGW456L13_2223at 2441.235 kb on + strand, within PfGW456L13_2223at 2441.235 kb on + strand, within PfGW456L13_2223at 2441.235 kb on + strand, within PfGW456L13_2223at 2441.235 kb on + strand, within PfGW456L13_2223at 2441.235 kb on + strand, within PfGW456L13_2223at 2441.235 kb on + strand, within PfGW456L13_2223at 2441.235 kb on + strand, within PfGW456L13_2223at 2441.235 kb on + strand, within PfGW456L13_2223at 2441.235 kb on + strand, within PfGW456L13_2223at 2441.235 kb on + strand, within PfGW456L13_2223at 2441.235 kb on + strand, within PfGW456L13_2223at 2441.235 kb on + strandat 2441.236 kb on - strand, within PfGW456L13_2223at 2441.236 kb on - strand, within PfGW456L13_2223at 2441.236 kb on - strand, within PfGW456L13_2223at 2441.236 kb on - strand, within PfGW456L13_2223at 2441.236 kb on - strand, within PfGW456L13_2223at 2441.238 kb on - strand, within PfGW456L13_2223at 2441.238 kb on - strand, within PfGW456L13_2223at 2441.264 kb on + strand, within PfGW456L13_2223at 2441.264 kb on + strand, within PfGW456L13_2223at 2441.264 kb on + strand, within PfGW456L13_2223at 2441.264 kb on + strand, within PfGW456L13_2223at 2441.264 kb on + strand, within PfGW456L13_2223at 2441.265 kb on - strand, within PfGW456L13_2223at 2441.265 kb on - strand, within PfGW456L13_2223at 2441.268 kb on + strand, within PfGW456L13_2223at 2441.268 kb on + strand, within PfGW456L13_2223at 2441.268 kb on + strand, within PfGW456L13_2223at 2441.269 kb on - strand, within PfGW456L13_2223at 2441.269 kb on - strand, within PfGW456L13_2223at 2441.269 kb on - strand, within PfGW456L13_2223at 2441.269 kb on - strand, within PfGW456L13_2223at 2441.269 kb on - strand, within PfGW456L13_2223at 2441.340 kb on + strand, within PfGW456L13_2223at 2441.340 kb on + strand, within PfGW456L13_2223at 2441.340 kb on + strand, within PfGW456L13_2223at 2441.358 kb on + strand, within PfGW456L13_2223at 2441.359 kb on - strand, within PfGW456L13_2223at 2441.359 kb on - strand, within PfGW456L13_2223at 2441.382 kb on + strand, within PfGW456L13_2223at 2441.382 kb on + strand, within PfGW456L13_2223at 2441.382 kb on + strand, within PfGW456L13_2223at 2441.382 kb on + strand, within PfGW456L13_2223at 2441.382 kb on + strand, within PfGW456L13_2223at 2441.382 kb on + strand, within PfGW456L13_2223at 2441.382 kb on + strand, within PfGW456L13_2223at 2441.383 kb on - strand, within PfGW456L13_2223at 2441.383 kb on - strand, within PfGW456L13_2223at 2441.383 kb on - strand, within PfGW456L13_2223at 2441.394 kb on + strand, within PfGW456L13_2223at 2441.394 kb on + strand, within PfGW456L13_2223at 2441.395 kb on - strand, within PfGW456L13_2223at 2441.395 kb on - strandat 2441.395 kb on - strand, within PfGW456L13_2223at 2441.459 kb on + strandat 2441.459 kb on + strandat 2441.459 kb on + strandat 2441.460 kb on - strandat 2441.543 kb on + strandat 2441.636 kb on - strand, within PfGW456L13_2224at 2441.875 kb on + strand, within PfGW456L13_2224at 2441.876 kb on - strand, within PfGW456L13_2224at 2441.917 kb on + strand, within PfGW456L13_2224at 2442.145 kb on + strand, within PfGW456L13_2224at 2442.145 kb on + strand, within PfGW456L13_2224at 2442.145 kb on + strand, within PfGW456L13_2224at 2442.266 kb on - strand, within PfGW456L13_2224at 2442.302 kb on + strand, within PfGW456L13_2224at 2442.302 kb on + strand, within PfGW456L13_2224at 2442.302 kb on + strand, within PfGW456L13_2224at 2442.303 kb on - strand, within PfGW456L13_2224at 2442.303 kb on - strand, within PfGW456L13_2224at 2442.303 kb on - strand, within PfGW456L13_2224at 2442.303 kb on - strand, within PfGW456L13_2224at 2442.320 kb on - strand, within PfGW456L13_2224at 2442.320 kb on - strand, within PfGW456L13_2224at 2442.330 kb on - strand, within PfGW456L13_2224at 2442.337 kb on + strand, within PfGW456L13_2224at 2442.338 kb on - strand, within PfGW456L13_2224at 2442.338 kb on - strand, within PfGW456L13_2224at 2442.338 kb on - strand, within PfGW456L13_2224at 2442.338 kb on - strand, within PfGW456L13_2224at 2442.385 kb on + strand, within PfGW456L13_2224at 2442.386 kb on - strand, within PfGW456L13_2224at 2442.525 kb on - strandat 2442.576 kb on + strandat 2442.667 kb on - strandat 2442.792 kb on - strandat 2442.923 kb on + strand, within PfGW456L13_2225at 2442.997 kb on + strand, within PfGW456L13_2225at 2442.997 kb on + strand, within PfGW456L13_2225at 2443.037 kb on + strand, within PfGW456L13_2225at 2443.038 kb on - strand, within PfGW456L13_2225at 2443.038 kb on - strand, within PfGW456L13_2225at 2443.047 kb on - strandat 2443.078 kb on + strandat 2443.078 kb on + strandat 2443.078 kb on + strandat 2443.078 kb on + strandat 2443.079 kb on - strandat 2443.115 kb on + strandat 2443.143 kb on + strandat 2443.144 kb on - strandat 2443.144 kb on - strandat 2443.144 kb on - strandat 2443.144 kb on - strandat 2443.189 kb on + strandat 2443.190 kb on - strandat 2443.279 kb on + strandat 2443.279 kb on + strandat 2443.280 kb on - strandat 2443.280 kb on - strandat 2443.280 kb on - strandat 2443.280 kb on - strandat 2443.281 kb on + strandat 2443.281 kb on + strandat 2443.281 kb on + strandat 2443.281 kb on + strandat 2443.282 kb on - strandat 2443.282 kb on - strandat 2443.282 kb on - strandat 2443.282 kb on - strandat 2443.282 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,440,534 + -1.2
2,440,535 - -2.4
2,440,535 - -1.5
2,440,535 - -1.1
2,440,537 + -0.0
2,440,538 - -2.2
2,440,538 - -0.2
2,440,538 - -1.2
2,440,541 + -1.8
2,440,541 + -1.2
2,440,541 + -0.4
2,440,541 + -1.1
2,440,541 + -0.6
2,440,542 - -0.6
2,440,542 - -3.6
2,440,542 - -0.9
2,440,542 - -1.2
2,440,542 - -0.6
2,440,542 - -1.8
2,440,542 - -0.8
2,440,545 + +0.7
2,440,545 + -1.4
2,440,545 + -0.8
2,440,545 + -2.1
2,440,545 + +0.4
2,440,546 - -1.1
2,440,546 - -0.9
2,440,546 - -0.9
2,440,546 - -0.8
2,440,546 - -0.7
2,440,546 - -1.0
2,440,575 + -0.7
2,440,575 + -1.6
2,440,576 - -1.0
2,440,576 - -0.8
2,440,579 + -0.8
2,440,579 + -2.3
2,440,579 + -1.9
2,440,579 + -3.1
2,440,579 + -1.1
2,440,579 + -1.0
2,440,580 - -0.5
2,440,580 - -0.9
2,440,580 - -1.8
2,440,580 - +1.0
2,440,580 - +0.1
2,440,580 - -0.4
2,440,580 - -0.3
2,440,583 - -1.5
2,440,583 - -1.5
2,440,589 + -1.0
2,440,589 + +0.7
2,440,590 - +0.4
2,440,590 - -0.9
2,440,595 + -1.4
2,440,595 + -0.4
2,440,595 + -1.4
2,440,595 + -0.3
2,440,595 + -1.9
2,440,596 - -3.2
2,440,596 - -1.2
2,440,596 - +0.1
2,440,598 + -1.3
2,440,598 + -0.6
2,440,599 - -2.0
2,440,599 - +0.2
2,440,599 - -1.3
2,440,603 - -0.2
2,440,638 - -0.5
2,440,666 + -1.7
2,440,776 + -1.3
2,440,776 + -2.2
2,440,777 - +0.7
2,440,827 - -0.6
2,440,853 - +0.4
2,440,871 + -1.2
2,440,871 + -1.7
2,440,872 - +0.2
2,440,872 - +0.4
2,440,872 - +0.6
2,440,872 - +0.5
2,441,010 - -0.3
2,441,012 + -1.6
2,441,012 + -1.1
2,441,012 + -0.2
2,441,012 + -2.7
2,441,012 + -1.3
2,441,012 + +0.1
2,441,012 + +1.6
2,441,012 + -0.6
2,441,013 - -1.7
2,441,013 - +0.4
2,441,013 - +0.3
2,441,013 - +0.5
2,441,013 - +0.6
2,441,013 - -1.7
2,441,013 - +0.9
2,441,013 - +0.1
2,441,018 + -0.9
2,441,018 + +0.4
2,441,018 + -0.4
2,441,019 - -0.7
2,441,019 - +0.4
2,441,019 - +1.2
2,441,082 + -0.6
2,441,082 + -0.6
2,441,082 + -0.6
2,441,082 + -0.7
2,441,082 + -0.3
2,441,082 + +0.1
2,441,082 + -1.4
2,441,082 + +0.7
2,441,082 + +0.5
2,441,082 + +0.1
2,441,082 + -0.5
2,441,082 + -1.2
2,441,082 + +0.3
2,441,082 + +0.0
2,441,082 + -0.2
2,441,083 - -0.4
2,441,083 - +0.5
2,441,083 - +0.5
2,441,083 - +1.0
2,441,083 - +0.4
2,441,083 - +0.7
2,441,112 - +0.5
2,441,117 - +0.2
2,441,117 - -0.6
2,441,146 + -1.0
2,441,146 + +0.7
2,441,146 + -0.8
2,441,146 + +0.5
2,441,147 - +1.3
2,441,147 - +1.2
2,441,227 - PfGW456L13_2223 0.26 -0.0
2,441,227 - PfGW456L13_2223 0.26 -0.6
2,441,227 - PfGW456L13_2223 0.26 +0.4
2,441,235 + PfGW456L13_2223 0.29 +0.3
2,441,235 + PfGW456L13_2223 0.29 -0.3
2,441,235 + PfGW456L13_2223 0.29 -1.2
2,441,235 + PfGW456L13_2223 0.29 +0.8
2,441,235 + PfGW456L13_2223 0.29 +0.4
2,441,235 + PfGW456L13_2223 0.29 -0.0
2,441,235 + PfGW456L13_2223 0.29 +0.5
2,441,235 + PfGW456L13_2223 0.29 +0.3
2,441,235 + PfGW456L13_2223 0.29 -0.1
2,441,235 + PfGW456L13_2223 0.29 +0.9
2,441,235 + PfGW456L13_2223 0.29 -1.2
2,441,235 + PfGW456L13_2223 0.29 -0.8
2,441,235 + PfGW456L13_2223 0.29 -0.9
2,441,235 + PfGW456L13_2223 0.29 +0.4
2,441,235 + +1.0
2,441,236 - PfGW456L13_2223 0.30 -0.4
2,441,236 - PfGW456L13_2223 0.30 +0.4
2,441,236 - PfGW456L13_2223 0.30 +0.7
2,441,236 - PfGW456L13_2223 0.30 -1.8
2,441,236 - PfGW456L13_2223 0.30 +1.3
2,441,238 - PfGW456L13_2223 0.30 +0.3
2,441,238 - PfGW456L13_2223 0.30 +2.0
2,441,264 + PfGW456L13_2223 0.39 -2.6
2,441,264 + PfGW456L13_2223 0.39 +1.2
2,441,264 + PfGW456L13_2223 0.39 -1.2
2,441,264 + PfGW456L13_2223 0.39 +0.5
2,441,264 + PfGW456L13_2223 0.39 -0.3
2,441,265 - PfGW456L13_2223 0.40 +0.7
2,441,265 - PfGW456L13_2223 0.40 +0.4
2,441,268 + PfGW456L13_2223 0.41 -0.6
2,441,268 + PfGW456L13_2223 0.41 -0.4
2,441,268 + PfGW456L13_2223 0.41 +0.5
2,441,269 - PfGW456L13_2223 0.41 -0.3
2,441,269 - PfGW456L13_2223 0.41 -0.3
2,441,269 - PfGW456L13_2223 0.41 +0.4
2,441,269 - PfGW456L13_2223 0.41 -0.1
2,441,269 - PfGW456L13_2223 0.41 -0.2
2,441,340 + PfGW456L13_2223 0.66 -0.2
2,441,340 + PfGW456L13_2223 0.66 -1.2
2,441,340 + PfGW456L13_2223 0.66 -0.6
2,441,358 + PfGW456L13_2223 0.72 -0.6
2,441,359 - PfGW456L13_2223 0.72 -0.7
2,441,359 - PfGW456L13_2223 0.72 -0.2
2,441,382 + PfGW456L13_2223 0.80 +0.5
2,441,382 + PfGW456L13_2223 0.80 +0.1
2,441,382 + PfGW456L13_2223 0.80 -0.6
2,441,382 + PfGW456L13_2223 0.80 -0.6
2,441,382 + PfGW456L13_2223 0.80 +0.4
2,441,382 + PfGW456L13_2223 0.80 +1.1
2,441,382 + PfGW456L13_2223 0.80 -0.0
2,441,383 - PfGW456L13_2223 0.81 -0.1
2,441,383 - PfGW456L13_2223 0.81 -0.6
2,441,383 - PfGW456L13_2223 0.81 +0.9
2,441,394 + PfGW456L13_2223 0.84 -0.2
2,441,394 + PfGW456L13_2223 0.84 -0.3
2,441,395 - PfGW456L13_2223 0.85 +0.7
2,441,395 - +0.4
2,441,395 - PfGW456L13_2223 0.85 -0.3
2,441,459 + -1.0
2,441,459 + -0.7
2,441,459 + -1.1
2,441,460 - +0.4
2,441,543 + -1.0
2,441,636 - PfGW456L13_2224 0.10 +0.1
2,441,875 + PfGW456L13_2224 0.32 -0.9
2,441,876 - PfGW456L13_2224 0.32 +0.7
2,441,917 + PfGW456L13_2224 0.36 -1.2
2,442,145 + PfGW456L13_2224 0.57 -0.7
2,442,145 + PfGW456L13_2224 0.57 -0.7
2,442,145 + PfGW456L13_2224 0.57 -2.8
2,442,266 - PfGW456L13_2224 0.69 +0.7
2,442,302 + PfGW456L13_2224 0.72 +0.0
2,442,302 + PfGW456L13_2224 0.72 -0.7
2,442,302 + PfGW456L13_2224 0.72 +0.1
2,442,303 - PfGW456L13_2224 0.72 -1.1
2,442,303 - PfGW456L13_2224 0.72 -0.4
2,442,303 - PfGW456L13_2224 0.72 -1.0
2,442,303 - PfGW456L13_2224 0.72 +0.7
2,442,320 - PfGW456L13_2224 0.74 -0.4
2,442,320 - PfGW456L13_2224 0.74 +0.2
2,442,330 - PfGW456L13_2224 0.75 +0.9
2,442,337 + PfGW456L13_2224 0.75 -0.9
2,442,338 - PfGW456L13_2224 0.75 -0.3
2,442,338 - PfGW456L13_2224 0.75 -0.3
2,442,338 - PfGW456L13_2224 0.75 +0.6
2,442,338 - PfGW456L13_2224 0.75 +0.9
2,442,385 + PfGW456L13_2224 0.80 -1.1
2,442,386 - PfGW456L13_2224 0.80 +0.1
2,442,525 - -0.9
2,442,576 + -0.1
2,442,667 - -0.2
2,442,792 - -0.2
2,442,923 + PfGW456L13_2225 0.47 +2.9
2,442,997 + PfGW456L13_2225 0.73 +0.4
2,442,997 + PfGW456L13_2225 0.73 -0.0
2,443,037 + PfGW456L13_2225 0.87 +1.4
2,443,038 - PfGW456L13_2225 0.87 -0.5
2,443,038 - PfGW456L13_2225 0.87 -0.2
2,443,047 - -0.5
2,443,078 + -0.2
2,443,078 + +0.7
2,443,078 + -0.2
2,443,078 + +0.2
2,443,079 - +0.6
2,443,115 + -2.2
2,443,143 + -0.7
2,443,144 - -0.7
2,443,144 - -0.4
2,443,144 - -0.7
2,443,144 - -0.0
2,443,189 + -0.3
2,443,190 - -0.6
2,443,279 + -0.0
2,443,279 + +1.0
2,443,280 - +0.4
2,443,280 - -0.7
2,443,280 - -1.1
2,443,280 - +1.0
2,443,281 + +0.2
2,443,281 + +0.6
2,443,281 + +0.7
2,443,281 + -0.8
2,443,282 - -0.8
2,443,282 - -0.8
2,443,282 - -1.0
2,443,282 - +0.2
2,443,282 - -0.2

Or see this region's nucleotide sequence