Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2223 and PfGW456L13_2224 are separated by 87 nucleotides PfGW456L13_2224 and PfGW456L13_2225 are separated by 187 nucleotides PfGW456L13_2225 and PfGW456L13_2226 are separated by 208 nucleotides
PfGW456L13_2223 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 2,441,151 to 2,441,438
_2223
PfGW456L13_2224 - 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54), at 2,441,526 to 2,442,602
_2224
PfGW456L13_2225 - FIG00958794: hypothetical protein, at 2,442,790 to 2,443,074
_2225
PfGW456L13_2226 - Possible periplasmic thiredoxin, at 2,443,283 to 2,443,618
_2226
Position (kb)
2441
2442
2443 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2440.534 kb on + strand at 2440.535 kb on - strand at 2440.535 kb on - strand at 2440.535 kb on - strand at 2440.537 kb on + strand at 2440.538 kb on - strand at 2440.538 kb on - strand at 2440.538 kb on - strand at 2440.541 kb on + strand at 2440.541 kb on + strand at 2440.541 kb on + strand at 2440.541 kb on + strand at 2440.541 kb on + strand at 2440.542 kb on - strand at 2440.542 kb on - strand at 2440.542 kb on - strand at 2440.542 kb on - strand at 2440.542 kb on - strand at 2440.542 kb on - strand at 2440.542 kb on - strand at 2440.545 kb on + strand at 2440.545 kb on + strand at 2440.545 kb on + strand at 2440.545 kb on + strand at 2440.545 kb on + strand at 2440.546 kb on - strand at 2440.546 kb on - strand at 2440.546 kb on - strand at 2440.546 kb on - strand at 2440.546 kb on - strand at 2440.546 kb on - strand at 2440.575 kb on + strand at 2440.575 kb on + strand at 2440.576 kb on - strand at 2440.576 kb on - strand at 2440.579 kb on + strand at 2440.579 kb on + strand at 2440.579 kb on + strand at 2440.579 kb on + strand at 2440.579 kb on + strand at 2440.579 kb on + strand at 2440.580 kb on - strand at 2440.580 kb on - strand at 2440.580 kb on - strand at 2440.580 kb on - strand at 2440.580 kb on - strand at 2440.580 kb on - strand at 2440.580 kb on - strand at 2440.583 kb on - strand at 2440.583 kb on - strand at 2440.589 kb on + strand at 2440.589 kb on + strand at 2440.590 kb on - strand at 2440.590 kb on - strand at 2440.595 kb on + strand at 2440.595 kb on + strand at 2440.595 kb on + strand at 2440.595 kb on + strand at 2440.595 kb on + strand at 2440.596 kb on - strand at 2440.596 kb on - strand at 2440.596 kb on - strand at 2440.598 kb on + strand at 2440.598 kb on + strand at 2440.599 kb on - strand at 2440.599 kb on - strand at 2440.599 kb on - strand at 2440.603 kb on - strand at 2440.638 kb on - strand at 2440.666 kb on + strand at 2440.776 kb on + strand at 2440.776 kb on + strand at 2440.777 kb on - strand at 2440.827 kb on - strand at 2440.853 kb on - strand at 2440.871 kb on + strand at 2440.871 kb on + strand at 2440.872 kb on - strand at 2440.872 kb on - strand at 2440.872 kb on - strand at 2440.872 kb on - strand at 2441.010 kb on - strand at 2441.012 kb on + strand at 2441.012 kb on + strand at 2441.012 kb on + strand at 2441.012 kb on + strand at 2441.012 kb on + strand at 2441.012 kb on + strand at 2441.012 kb on + strand at 2441.012 kb on + strand at 2441.013 kb on - strand at 2441.013 kb on - strand at 2441.013 kb on - strand at 2441.013 kb on - strand at 2441.013 kb on - strand at 2441.013 kb on - strand at 2441.013 kb on - strand at 2441.013 kb on - strand at 2441.018 kb on + strand at 2441.018 kb on + strand at 2441.018 kb on + strand at 2441.019 kb on - strand at 2441.019 kb on - strand at 2441.019 kb on - strand at 2441.082 kb on + strand at 2441.082 kb on + strand at 2441.082 kb on + strand at 2441.082 kb on + strand at 2441.082 kb on + strand at 2441.082 kb on + strand at 2441.082 kb on + strand at 2441.082 kb on + strand at 2441.082 kb on + strand at 2441.082 kb on + strand at 2441.082 kb on + strand at 2441.082 kb on + strand at 2441.082 kb on + strand at 2441.082 kb on + strand at 2441.082 kb on + strand at 2441.083 kb on - strand at 2441.083 kb on - strand at 2441.083 kb on - strand at 2441.083 kb on - strand at 2441.083 kb on - strand at 2441.083 kb on - strand at 2441.112 kb on - strand at 2441.117 kb on - strand at 2441.117 kb on - strand at 2441.146 kb on + strand at 2441.146 kb on + strand at 2441.146 kb on + strand at 2441.146 kb on + strand at 2441.147 kb on - strand at 2441.147 kb on - strand at 2441.227 kb on - strand, within PfGW456L13_2223 at 2441.227 kb on - strand, within PfGW456L13_2223 at 2441.227 kb on - strand, within PfGW456L13_2223 at 2441.235 kb on + strand, within PfGW456L13_2223 at 2441.235 kb on + strand, within PfGW456L13_2223 at 2441.235 kb on + strand, within PfGW456L13_2223 at 2441.235 kb on + strand, within PfGW456L13_2223 at 2441.235 kb on + strand, within PfGW456L13_2223 at 2441.235 kb on + strand, within PfGW456L13_2223 at 2441.235 kb on + strand, within PfGW456L13_2223 at 2441.235 kb on + strand, within PfGW456L13_2223 at 2441.235 kb on + strand, within PfGW456L13_2223 at 2441.235 kb on + strand, within PfGW456L13_2223 at 2441.235 kb on + strand, within PfGW456L13_2223 at 2441.235 kb on + strand, within PfGW456L13_2223 at 2441.235 kb on + strand, within PfGW456L13_2223 at 2441.235 kb on + strand, within PfGW456L13_2223 at 2441.235 kb on + strand at 2441.236 kb on - strand, within PfGW456L13_2223 at 2441.236 kb on - strand, within PfGW456L13_2223 at 2441.236 kb on - strand, within PfGW456L13_2223 at 2441.236 kb on - strand, within PfGW456L13_2223 at 2441.236 kb on - strand, within PfGW456L13_2223 at 2441.238 kb on - strand, within PfGW456L13_2223 at 2441.238 kb on - strand, within PfGW456L13_2223 at 2441.264 kb on + strand, within PfGW456L13_2223 at 2441.264 kb on + strand, within PfGW456L13_2223 at 2441.264 kb on + strand, within PfGW456L13_2223 at 2441.264 kb on + strand, within PfGW456L13_2223 at 2441.264 kb on + strand, within PfGW456L13_2223 at 2441.265 kb on - strand, within PfGW456L13_2223 at 2441.265 kb on - strand, within PfGW456L13_2223 at 2441.268 kb on + strand, within PfGW456L13_2223 at 2441.268 kb on + strand, within PfGW456L13_2223 at 2441.268 kb on + strand, within PfGW456L13_2223 at 2441.269 kb on - strand, within PfGW456L13_2223 at 2441.269 kb on - strand, within PfGW456L13_2223 at 2441.269 kb on - strand, within PfGW456L13_2223 at 2441.269 kb on - strand, within PfGW456L13_2223 at 2441.269 kb on - strand, within PfGW456L13_2223 at 2441.340 kb on + strand, within PfGW456L13_2223 at 2441.340 kb on + strand, within PfGW456L13_2223 at 2441.340 kb on + strand, within PfGW456L13_2223 at 2441.358 kb on + strand, within PfGW456L13_2223 at 2441.359 kb on - strand, within PfGW456L13_2223 at 2441.359 kb on - strand, within PfGW456L13_2223 at 2441.382 kb on + strand, within PfGW456L13_2223 at 2441.382 kb on + strand, within PfGW456L13_2223 at 2441.382 kb on + strand, within PfGW456L13_2223 at 2441.382 kb on + strand, within PfGW456L13_2223 at 2441.382 kb on + strand, within PfGW456L13_2223 at 2441.382 kb on + strand, within PfGW456L13_2223 at 2441.382 kb on + strand, within PfGW456L13_2223 at 2441.383 kb on - strand, within PfGW456L13_2223 at 2441.383 kb on - strand, within PfGW456L13_2223 at 2441.383 kb on - strand, within PfGW456L13_2223 at 2441.394 kb on + strand, within PfGW456L13_2223 at 2441.394 kb on + strand, within PfGW456L13_2223 at 2441.395 kb on - strand, within PfGW456L13_2223 at 2441.395 kb on - strand at 2441.395 kb on - strand, within PfGW456L13_2223 at 2441.459 kb on + strand at 2441.459 kb on + strand at 2441.459 kb on + strand at 2441.460 kb on - strand at 2441.543 kb on + strand at 2441.636 kb on - strand, within PfGW456L13_2224 at 2441.875 kb on + strand, within PfGW456L13_2224 at 2441.876 kb on - strand, within PfGW456L13_2224 at 2441.917 kb on + strand, within PfGW456L13_2224 at 2442.145 kb on + strand, within PfGW456L13_2224 at 2442.145 kb on + strand, within PfGW456L13_2224 at 2442.145 kb on + strand, within PfGW456L13_2224 at 2442.266 kb on - strand, within PfGW456L13_2224 at 2442.302 kb on + strand, within PfGW456L13_2224 at 2442.302 kb on + strand, within PfGW456L13_2224 at 2442.302 kb on + strand, within PfGW456L13_2224 at 2442.303 kb on - strand, within PfGW456L13_2224 at 2442.303 kb on - strand, within PfGW456L13_2224 at 2442.303 kb on - strand, within PfGW456L13_2224 at 2442.303 kb on - strand, within PfGW456L13_2224 at 2442.320 kb on - strand, within PfGW456L13_2224 at 2442.320 kb on - strand, within PfGW456L13_2224 at 2442.330 kb on - strand, within PfGW456L13_2224 at 2442.337 kb on + strand, within PfGW456L13_2224 at 2442.338 kb on - strand, within PfGW456L13_2224 at 2442.338 kb on - strand, within PfGW456L13_2224 at 2442.338 kb on - strand, within PfGW456L13_2224 at 2442.338 kb on - strand, within PfGW456L13_2224 at 2442.385 kb on + strand, within PfGW456L13_2224 at 2442.386 kb on - strand, within PfGW456L13_2224 at 2442.525 kb on - strand at 2442.576 kb on + strand at 2442.667 kb on - strand at 2442.792 kb on - strand at 2442.923 kb on + strand, within PfGW456L13_2225 at 2442.997 kb on + strand, within PfGW456L13_2225 at 2442.997 kb on + strand, within PfGW456L13_2225 at 2443.037 kb on + strand, within PfGW456L13_2225 at 2443.038 kb on - strand, within PfGW456L13_2225 at 2443.038 kb on - strand, within PfGW456L13_2225 at 2443.047 kb on - strand at 2443.078 kb on + strand at 2443.078 kb on + strand at 2443.078 kb on + strand at 2443.078 kb on + strand at 2443.079 kb on - strand at 2443.115 kb on + strand at 2443.143 kb on + strand at 2443.144 kb on - strand at 2443.144 kb on - strand at 2443.144 kb on - strand at 2443.144 kb on - strand at 2443.189 kb on + strand at 2443.190 kb on - strand at 2443.279 kb on + strand at 2443.279 kb on + strand at 2443.280 kb on - strand at 2443.280 kb on - strand at 2443.280 kb on - strand at 2443.280 kb on - strand at 2443.281 kb on + strand at 2443.281 kb on + strand at 2443.281 kb on + strand at 2443.281 kb on + strand at 2443.282 kb on - strand at 2443.282 kb on - strand at 2443.282 kb on - strand at 2443.282 kb on - strand at 2443.282 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 2,440,534 + -1.2 2,440,535 - -2.4 2,440,535 - -1.5 2,440,535 - -1.1 2,440,537 + -0.0 2,440,538 - -2.2 2,440,538 - -0.2 2,440,538 - -1.2 2,440,541 + -1.8 2,440,541 + -1.2 2,440,541 + -0.4 2,440,541 + -1.1 2,440,541 + -0.6 2,440,542 - -0.6 2,440,542 - -3.6 2,440,542 - -0.9 2,440,542 - -1.2 2,440,542 - -0.6 2,440,542 - -1.8 2,440,542 - -0.8 2,440,545 + +0.7 2,440,545 + -1.4 2,440,545 + -0.8 2,440,545 + -2.1 2,440,545 + +0.4 2,440,546 - -1.1 2,440,546 - -0.9 2,440,546 - -0.9 2,440,546 - -0.8 2,440,546 - -0.7 2,440,546 - -1.0 2,440,575 + -0.7 2,440,575 + -1.6 2,440,576 - -1.0 2,440,576 - -0.8 2,440,579 + -0.8 2,440,579 + -2.3 2,440,579 + -1.9 2,440,579 + -3.1 2,440,579 + -1.1 2,440,579 + -1.0 2,440,580 - -0.5 2,440,580 - -0.9 2,440,580 - -1.8 2,440,580 - +1.0 2,440,580 - +0.1 2,440,580 - -0.4 2,440,580 - -0.3 2,440,583 - -1.5 2,440,583 - -1.5 2,440,589 + -1.0 2,440,589 + +0.7 2,440,590 - +0.4 2,440,590 - -0.9 2,440,595 + -1.4 2,440,595 + -0.4 2,440,595 + -1.4 2,440,595 + -0.3 2,440,595 + -1.9 2,440,596 - -3.2 2,440,596 - -1.2 2,440,596 - +0.1 2,440,598 + -1.3 2,440,598 + -0.6 2,440,599 - -2.0 2,440,599 - +0.2 2,440,599 - -1.3 2,440,603 - -0.2 2,440,638 - -0.5 2,440,666 + -1.7 2,440,776 + -1.3 2,440,776 + -2.2 2,440,777 - +0.7 2,440,827 - -0.6 2,440,853 - +0.4 2,440,871 + -1.2 2,440,871 + -1.7 2,440,872 - +0.2 2,440,872 - +0.4 2,440,872 - +0.6 2,440,872 - +0.5 2,441,010 - -0.3 2,441,012 + -1.6 2,441,012 + -1.1 2,441,012 + -0.2 2,441,012 + -2.7 2,441,012 + -1.3 2,441,012 + +0.1 2,441,012 + +1.6 2,441,012 + -0.6 2,441,013 - -1.7 2,441,013 - +0.4 2,441,013 - +0.3 2,441,013 - +0.5 2,441,013 - +0.6 2,441,013 - -1.7 2,441,013 - +0.9 2,441,013 - +0.1 2,441,018 + -0.9 2,441,018 + +0.4 2,441,018 + -0.4 2,441,019 - -0.7 2,441,019 - +0.4 2,441,019 - +1.2 2,441,082 + -0.6 2,441,082 + -0.6 2,441,082 + -0.6 2,441,082 + -0.7 2,441,082 + -0.3 2,441,082 + +0.1 2,441,082 + -1.4 2,441,082 + +0.7 2,441,082 + +0.5 2,441,082 + +0.1 2,441,082 + -0.5 2,441,082 + -1.2 2,441,082 + +0.3 2,441,082 + +0.0 2,441,082 + -0.2 2,441,083 - -0.4 2,441,083 - +0.5 2,441,083 - +0.5 2,441,083 - +1.0 2,441,083 - +0.4 2,441,083 - +0.7 2,441,112 - +0.5 2,441,117 - +0.2 2,441,117 - -0.6 2,441,146 + -1.0 2,441,146 + +0.7 2,441,146 + -0.8 2,441,146 + +0.5 2,441,147 - +1.3 2,441,147 - +1.2 2,441,227 - PfGW456L13_2223 0.26 -0.0 2,441,227 - PfGW456L13_2223 0.26 -0.6 2,441,227 - PfGW456L13_2223 0.26 +0.4 2,441,235 + PfGW456L13_2223 0.29 +0.3 2,441,235 + PfGW456L13_2223 0.29 -0.3 2,441,235 + PfGW456L13_2223 0.29 -1.2 2,441,235 + PfGW456L13_2223 0.29 +0.8 2,441,235 + PfGW456L13_2223 0.29 +0.4 2,441,235 + PfGW456L13_2223 0.29 -0.0 2,441,235 + PfGW456L13_2223 0.29 +0.5 2,441,235 + PfGW456L13_2223 0.29 +0.3 2,441,235 + PfGW456L13_2223 0.29 -0.1 2,441,235 + PfGW456L13_2223 0.29 +0.9 2,441,235 + PfGW456L13_2223 0.29 -1.2 2,441,235 + PfGW456L13_2223 0.29 -0.8 2,441,235 + PfGW456L13_2223 0.29 -0.9 2,441,235 + PfGW456L13_2223 0.29 +0.4 2,441,235 + +1.0 2,441,236 - PfGW456L13_2223 0.30 -0.4 2,441,236 - PfGW456L13_2223 0.30 +0.4 2,441,236 - PfGW456L13_2223 0.30 +0.7 2,441,236 - PfGW456L13_2223 0.30 -1.8 2,441,236 - PfGW456L13_2223 0.30 +1.3 2,441,238 - PfGW456L13_2223 0.30 +0.3 2,441,238 - PfGW456L13_2223 0.30 +2.0 2,441,264 + PfGW456L13_2223 0.39 -2.6 2,441,264 + PfGW456L13_2223 0.39 +1.2 2,441,264 + PfGW456L13_2223 0.39 -1.2 2,441,264 + PfGW456L13_2223 0.39 +0.5 2,441,264 + PfGW456L13_2223 0.39 -0.3 2,441,265 - PfGW456L13_2223 0.40 +0.7 2,441,265 - PfGW456L13_2223 0.40 +0.4 2,441,268 + PfGW456L13_2223 0.41 -0.6 2,441,268 + PfGW456L13_2223 0.41 -0.4 2,441,268 + PfGW456L13_2223 0.41 +0.5 2,441,269 - PfGW456L13_2223 0.41 -0.3 2,441,269 - PfGW456L13_2223 0.41 -0.3 2,441,269 - PfGW456L13_2223 0.41 +0.4 2,441,269 - PfGW456L13_2223 0.41 -0.1 2,441,269 - PfGW456L13_2223 0.41 -0.2 2,441,340 + PfGW456L13_2223 0.66 -0.2 2,441,340 + PfGW456L13_2223 0.66 -1.2 2,441,340 + PfGW456L13_2223 0.66 -0.6 2,441,358 + PfGW456L13_2223 0.72 -0.6 2,441,359 - PfGW456L13_2223 0.72 -0.7 2,441,359 - PfGW456L13_2223 0.72 -0.2 2,441,382 + PfGW456L13_2223 0.80 +0.5 2,441,382 + PfGW456L13_2223 0.80 +0.1 2,441,382 + PfGW456L13_2223 0.80 -0.6 2,441,382 + PfGW456L13_2223 0.80 -0.6 2,441,382 + PfGW456L13_2223 0.80 +0.4 2,441,382 + PfGW456L13_2223 0.80 +1.1 2,441,382 + PfGW456L13_2223 0.80 -0.0 2,441,383 - PfGW456L13_2223 0.81 -0.1 2,441,383 - PfGW456L13_2223 0.81 -0.6 2,441,383 - PfGW456L13_2223 0.81 +0.9 2,441,394 + PfGW456L13_2223 0.84 -0.2 2,441,394 + PfGW456L13_2223 0.84 -0.3 2,441,395 - PfGW456L13_2223 0.85 +0.7 2,441,395 - +0.4 2,441,395 - PfGW456L13_2223 0.85 -0.3 2,441,459 + -1.0 2,441,459 + -0.7 2,441,459 + -1.1 2,441,460 - +0.4 2,441,543 + -1.0 2,441,636 - PfGW456L13_2224 0.10 +0.1 2,441,875 + PfGW456L13_2224 0.32 -0.9 2,441,876 - PfGW456L13_2224 0.32 +0.7 2,441,917 + PfGW456L13_2224 0.36 -1.2 2,442,145 + PfGW456L13_2224 0.57 -0.7 2,442,145 + PfGW456L13_2224 0.57 -0.7 2,442,145 + PfGW456L13_2224 0.57 -2.8 2,442,266 - PfGW456L13_2224 0.69 +0.7 2,442,302 + PfGW456L13_2224 0.72 +0.0 2,442,302 + PfGW456L13_2224 0.72 -0.7 2,442,302 + PfGW456L13_2224 0.72 +0.1 2,442,303 - PfGW456L13_2224 0.72 -1.1 2,442,303 - PfGW456L13_2224 0.72 -0.4 2,442,303 - PfGW456L13_2224 0.72 -1.0 2,442,303 - PfGW456L13_2224 0.72 +0.7 2,442,320 - PfGW456L13_2224 0.74 -0.4 2,442,320 - PfGW456L13_2224 0.74 +0.2 2,442,330 - PfGW456L13_2224 0.75 +0.9 2,442,337 + PfGW456L13_2224 0.75 -0.9 2,442,338 - PfGW456L13_2224 0.75 -0.3 2,442,338 - PfGW456L13_2224 0.75 -0.3 2,442,338 - PfGW456L13_2224 0.75 +0.6 2,442,338 - PfGW456L13_2224 0.75 +0.9 2,442,385 + PfGW456L13_2224 0.80 -1.1 2,442,386 - PfGW456L13_2224 0.80 +0.1 2,442,525 - -0.9 2,442,576 + -0.1 2,442,667 - -0.2 2,442,792 - -0.2 2,442,923 + PfGW456L13_2225 0.47 +2.9 2,442,997 + PfGW456L13_2225 0.73 +0.4 2,442,997 + PfGW456L13_2225 0.73 -0.0 2,443,037 + PfGW456L13_2225 0.87 +1.4 2,443,038 - PfGW456L13_2225 0.87 -0.5 2,443,038 - PfGW456L13_2225 0.87 -0.2 2,443,047 - -0.5 2,443,078 + -0.2 2,443,078 + +0.7 2,443,078 + -0.2 2,443,078 + +0.2 2,443,079 - +0.6 2,443,115 + -2.2 2,443,143 + -0.7 2,443,144 - -0.7 2,443,144 - -0.4 2,443,144 - -0.7 2,443,144 - -0.0 2,443,189 + -0.3 2,443,190 - -0.6 2,443,279 + -0.0 2,443,279 + +1.0 2,443,280 - +0.4 2,443,280 - -0.7 2,443,280 - -1.1 2,443,280 - +1.0 2,443,281 + +0.2 2,443,281 + +0.6 2,443,281 + +0.7 2,443,281 + -0.8 2,443,282 - -0.8 2,443,282 - -0.8 2,443,282 - -1.0 2,443,282 - +0.2 2,443,282 - -0.2
Or see this region's nucleotide sequence