Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2184

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2183 and PfGW456L13_2184 overlap by 14 nucleotidesPfGW456L13_2184 and PfGW456L13_2185 overlap by 13 nucleotides PfGW456L13_2183 - WzxE protein, at 2,393,563 to 2,394,822 _2183 PfGW456L13_2184 - putative polysaccharide polymerase, at 2,394,809 to 2,395,981 _2184 PfGW456L13_2185 - putative colanic acid biosynthesis glycosyl transferase, at 2,395,969 to 2,397,183 _2185 Position (kb) 2394 2395 2396Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2394.752 kb on + strandat 2394.753 kb on - strandat 2394.756 kb on - strandat 2394.792 kb on - strandat 2394.804 kb on + strandat 2394.828 kb on + strandat 2394.830 kb on + strandat 2394.831 kb on - strandat 2394.980 kb on + strand, within PfGW456L13_2184at 2395.061 kb on - strand, within PfGW456L13_2184at 2395.063 kb on - strand, within PfGW456L13_2184at 2395.095 kb on + strand, within PfGW456L13_2184at 2395.240 kb on + strand, within PfGW456L13_2184at 2395.339 kb on - strand, within PfGW456L13_2184at 2395.428 kb on - strand, within PfGW456L13_2184at 2395.431 kb on + strand, within PfGW456L13_2184at 2395.432 kb on - strand, within PfGW456L13_2184at 2395.582 kb on + strand, within PfGW456L13_2184at 2395.582 kb on + strand, within PfGW456L13_2184at 2395.583 kb on - strand, within PfGW456L13_2184at 2395.584 kb on + strand, within PfGW456L13_2184at 2395.585 kb on - strand, within PfGW456L13_2184at 2395.778 kb on + strand, within PfGW456L13_2184at 2395.779 kb on - strand, within PfGW456L13_2184at 2395.788 kb on - strand, within PfGW456L13_2184at 2395.878 kb on - strandat 2395.878 kb on - strandat 2395.937 kb on - strandat 2396.066 kb on - strandat 2396.088 kb on + strandat 2396.088 kb on + strandat 2396.195 kb on - strand, within PfGW456L13_2185at 2396.199 kb on + strand, within PfGW456L13_2185at 2396.200 kb on - strand, within PfGW456L13_2185at 2396.291 kb on + strand, within PfGW456L13_2185at 2396.302 kb on - strand, within PfGW456L13_2185at 2396.350 kb on + strand, within PfGW456L13_2185at 2396.698 kb on - strand, within PfGW456L13_2185at 2396.827 kb on + strand, within PfGW456L13_2185at 2396.828 kb on - strand, within PfGW456L13_2185at 2396.855 kb on + strand, within PfGW456L13_2185

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,394,752 + +0.1
2,394,753 - -0.2
2,394,756 - -3.3
2,394,792 - -2.3
2,394,804 + -1.3
2,394,828 + -0.5
2,394,830 + -3.1
2,394,831 - -1.3
2,394,980 + PfGW456L13_2184 0.15 -0.8
2,395,061 - PfGW456L13_2184 0.21 +0.2
2,395,063 - PfGW456L13_2184 0.22 +1.0
2,395,095 + PfGW456L13_2184 0.24 +0.8
2,395,240 + PfGW456L13_2184 0.37 +1.0
2,395,339 - PfGW456L13_2184 0.45 -1.6
2,395,428 - PfGW456L13_2184 0.53 -2.2
2,395,431 + PfGW456L13_2184 0.53 -1.3
2,395,432 - PfGW456L13_2184 0.53 -3.5
2,395,582 + PfGW456L13_2184 0.66 -1.2
2,395,582 + PfGW456L13_2184 0.66 -0.2
2,395,583 - PfGW456L13_2184 0.66 -0.8
2,395,584 + PfGW456L13_2184 0.66 -2.5
2,395,585 - PfGW456L13_2184 0.66 -1.6
2,395,778 + PfGW456L13_2184 0.83 -0.6
2,395,779 - PfGW456L13_2184 0.83 -0.1
2,395,788 - PfGW456L13_2184 0.83 -1.5
2,395,878 - -2.9
2,395,878 - -0.2
2,395,937 - -1.1
2,396,066 - -2.5
2,396,088 + -0.7
2,396,088 + +0.3
2,396,195 - PfGW456L13_2185 0.19 -1.8
2,396,199 + PfGW456L13_2185 0.19 +0.7
2,396,200 - PfGW456L13_2185 0.19 -2.0
2,396,291 + PfGW456L13_2185 0.27 +0.9
2,396,302 - PfGW456L13_2185 0.27 -1.0
2,396,350 + PfGW456L13_2185 0.31 +0.9
2,396,698 - PfGW456L13_2185 0.60 -2.2
2,396,827 + PfGW456L13_2185 0.71 +2.1
2,396,828 - PfGW456L13_2185 0.71 -0.2
2,396,855 + PfGW456L13_2185 0.73 +0.6

Or see this region's nucleotide sequence