Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2157

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2156 and PfGW456L13_2157 are separated by 102 nucleotidesPfGW456L13_2157 and PfGW456L13_2158 are separated by 262 nucleotides PfGW456L13_2156 - UDP-galactose-lipid carrier transferase (EC 2.-.-.-), at 2,359,605 to 2,361,125 _2156 PfGW456L13_2157 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16), at 2,361,228 to 2,362,412 _2157 PfGW456L13_2158 - membrane protein, putative, at 2,362,675 to 2,363,634 _2158 Position (kb) 2361 2362 2363Strain fitness (log2 ratio) -2 -1 0 1 2at 2360.584 kb on - strand, within PfGW456L13_2156at 2360.634 kb on + strand, within PfGW456L13_2156at 2360.634 kb on + strand, within PfGW456L13_2156at 2360.634 kb on + strand, within PfGW456L13_2156at 2360.634 kb on + strand, within PfGW456L13_2156at 2360.634 kb on + strand, within PfGW456L13_2156at 2360.635 kb on - strand, within PfGW456L13_2156at 2360.635 kb on - strand, within PfGW456L13_2156at 2360.635 kb on - strand, within PfGW456L13_2156at 2360.701 kb on - strand, within PfGW456L13_2156at 2360.763 kb on + strand, within PfGW456L13_2156at 2360.809 kb on + strand, within PfGW456L13_2156at 2360.809 kb on + strand, within PfGW456L13_2156at 2360.809 kb on + strand, within PfGW456L13_2156at 2360.810 kb on - strand, within PfGW456L13_2156at 2360.810 kb on - strand, within PfGW456L13_2156at 2360.810 kb on - strand, within PfGW456L13_2156at 2360.930 kb on + strand, within PfGW456L13_2156at 2360.930 kb on + strand, within PfGW456L13_2156at 2360.931 kb on - strand, within PfGW456L13_2156at 2360.931 kb on - strand, within PfGW456L13_2156at 2360.931 kb on - strand, within PfGW456L13_2156at 2361.111 kb on - strandat 2361.111 kb on - strandat 2361.111 kb on - strandat 2361.111 kb on - strandat 2361.111 kb on - strandat 2361.136 kb on - strandat 2361.141 kb on + strandat 2361.142 kb on - strandat 2361.184 kb on + strandat 2361.184 kb on + strandat 2361.184 kb on + strandat 2361.184 kb on + strandat 2361.184 kb on + strandat 2361.185 kb on - strandat 2361.185 kb on - strandat 2361.185 kb on - strandat 2361.185 kb on - strandat 2361.185 kb on - strandat 2361.185 kb on - strandat 2361.185 kb on - strandat 2361.222 kb on + strandat 2361.222 kb on + strandat 2361.222 kb on + strandat 2361.222 kb on + strandat 2361.222 kb on + strandat 2361.222 kb on + strandat 2361.222 kb on + strandat 2361.222 kb on + strandat 2361.222 kb on + strandat 2361.222 kb on + strandat 2361.222 kb on + strandat 2361.222 kb on + strandat 2361.223 kb on - strandat 2361.223 kb on - strandat 2361.223 kb on - strandat 2361.223 kb on - strandat 2361.223 kb on - strandat 2361.223 kb on - strandat 2361.223 kb on - strandat 2361.223 kb on - strandat 2361.223 kb on - strandat 2361.223 kb on - strandat 2361.223 kb on - strandat 2361.223 kb on - strandat 2361.223 kb on - strandat 2361.223 kb on - strandat 2361.223 kb on - strandat 2361.223 kb on - strandat 2361.223 kb on - strandat 2361.223 kb on - strandat 2361.223 kb on - strandat 2361.660 kb on + strand, within PfGW456L13_2157at 2361.660 kb on + strand, within PfGW456L13_2157at 2361.660 kb on + strand, within PfGW456L13_2157at 2361.660 kb on + strand, within PfGW456L13_2157at 2361.660 kb on + strand, within PfGW456L13_2157at 2361.661 kb on - strand, within PfGW456L13_2157at 2361.661 kb on - strand, within PfGW456L13_2157at 2361.661 kb on - strand, within PfGW456L13_2157at 2361.732 kb on + strand, within PfGW456L13_2157at 2361.732 kb on + strand, within PfGW456L13_2157at 2361.732 kb on + strand, within PfGW456L13_2157at 2361.732 kb on + strand, within PfGW456L13_2157at 2361.732 kb on + strand, within PfGW456L13_2157at 2361.733 kb on - strand, within PfGW456L13_2157at 2361.733 kb on - strand, within PfGW456L13_2157at 2361.733 kb on - strand, within PfGW456L13_2157at 2361.816 kb on + strand, within PfGW456L13_2157at 2361.816 kb on + strand, within PfGW456L13_2157at 2361.817 kb on - strand, within PfGW456L13_2157at 2361.817 kb on - strand, within PfGW456L13_2157at 2361.817 kb on - strand, within PfGW456L13_2157at 2361.962 kb on + strand, within PfGW456L13_2157at 2361.963 kb on - strand, within PfGW456L13_2157at 2361.963 kb on - strand, within PfGW456L13_2157at 2362.204 kb on - strand, within PfGW456L13_2157at 2362.204 kb on - strand, within PfGW456L13_2157at 2362.240 kb on - strand, within PfGW456L13_2157at 2362.345 kb on - strandat 2362.421 kb on - strandat 2362.421 kb on - strandat 2362.498 kb on + strandat 2362.498 kb on + strandat 2362.498 kb on + strandat 2362.498 kb on + strandat 2362.499 kb on - strandat 2362.499 kb on - strandat 2362.571 kb on - strandat 2362.618 kb on + strandat 2362.618 kb on + strandat 2362.619 kb on - strandat 2362.619 kb on - strandat 2362.619 kb on - strandat 2362.637 kb on + strandat 2362.637 kb on + strandat 2362.778 kb on + strand, within PfGW456L13_2158at 2362.840 kb on + strand, within PfGW456L13_2158at 2362.840 kb on + strand, within PfGW456L13_2158at 2362.841 kb on - strand, within PfGW456L13_2158at 2362.841 kb on - strand, within PfGW456L13_2158at 2362.841 kb on - strand, within PfGW456L13_2158at 2362.933 kb on - strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.945 kb on + strand, within PfGW456L13_2158at 2362.945 kb on + strand, within PfGW456L13_2158at 2362.945 kb on + strand, within PfGW456L13_2158at 2362.945 kb on + strand, within PfGW456L13_2158at 2362.945 kb on + strandat 2362.945 kb on + strand, within PfGW456L13_2158at 2362.945 kb on + strand, within PfGW456L13_2158at 2362.945 kb on + strand, within PfGW456L13_2158at 2362.946 kb on - strand, within PfGW456L13_2158at 2362.991 kb on + strand, within PfGW456L13_2158at 2363.081 kb on + strand, within PfGW456L13_2158at 2363.081 kb on + strand, within PfGW456L13_2158at 2363.149 kb on + strand, within PfGW456L13_2158at 2363.149 kb on + strand, within PfGW456L13_2158at 2363.150 kb on - strand, within PfGW456L13_2158at 2363.150 kb on - strand, within PfGW456L13_2158at 2363.200 kb on + strand, within PfGW456L13_2158at 2363.200 kb on + strand, within PfGW456L13_2158at 2363.200 kb on + strand, within PfGW456L13_2158at 2363.200 kb on + strand, within PfGW456L13_2158at 2363.200 kb on + strand, within PfGW456L13_2158at 2363.201 kb on - strand, within PfGW456L13_2158at 2363.201 kb on - strand, within PfGW456L13_2158at 2363.201 kb on - strand, within PfGW456L13_2158at 2363.263 kb on + strand, within PfGW456L13_2158at 2363.263 kb on + strand, within PfGW456L13_2158at 2363.263 kb on + strand, within PfGW456L13_2158at 2363.263 kb on + strand, within PfGW456L13_2158at 2363.264 kb on - strand, within PfGW456L13_2158at 2363.264 kb on - strand, within PfGW456L13_2158at 2363.264 kb on - strand, within PfGW456L13_2158at 2363.264 kb on - strand, within PfGW456L13_2158at 2363.264 kb on - strand, within PfGW456L13_2158at 2363.321 kb on + strand, within PfGW456L13_2158at 2363.321 kb on + strand, within PfGW456L13_2158at 2363.321 kb on + strand, within PfGW456L13_2158at 2363.322 kb on - strand, within PfGW456L13_2158at 2363.322 kb on - strand, within PfGW456L13_2158at 2363.322 kb on - strand, within PfGW456L13_2158at 2363.322 kb on - strand, within PfGW456L13_2158

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,360,584 - PfGW456L13_2156 0.64 +0.6
2,360,634 + PfGW456L13_2156 0.68 +0.9
2,360,634 + PfGW456L13_2156 0.68 +1.2
2,360,634 + PfGW456L13_2156 0.68 -0.2
2,360,634 + PfGW456L13_2156 0.68 +0.2
2,360,634 + PfGW456L13_2156 0.68 -0.3
2,360,635 - PfGW456L13_2156 0.68 +0.1
2,360,635 - PfGW456L13_2156 0.68 +0.6
2,360,635 - PfGW456L13_2156 0.68 -1.0
2,360,701 - PfGW456L13_2156 0.72 -0.7
2,360,763 + PfGW456L13_2156 0.76 +0.4
2,360,809 + PfGW456L13_2156 0.79 -0.1
2,360,809 + PfGW456L13_2156 0.79 -0.6
2,360,809 + PfGW456L13_2156 0.79 -0.1
2,360,810 - PfGW456L13_2156 0.79 +0.9
2,360,810 - PfGW456L13_2156 0.79 +0.0
2,360,810 - PfGW456L13_2156 0.79 -0.9
2,360,930 + PfGW456L13_2156 0.87 -0.6
2,360,930 + PfGW456L13_2156 0.87 +0.2
2,360,931 - PfGW456L13_2156 0.87 +1.2
2,360,931 - PfGW456L13_2156 0.87 -0.1
2,360,931 - PfGW456L13_2156 0.87 -0.5
2,361,111 - -0.2
2,361,111 - +0.2
2,361,111 - +0.3
2,361,111 - -0.1
2,361,111 - -0.8
2,361,136 - -0.6
2,361,141 + -0.2
2,361,142 - +0.2
2,361,184 + +1.2
2,361,184 + +0.2
2,361,184 + +0.7
2,361,184 + -1.0
2,361,184 + -0.9
2,361,185 - -0.6
2,361,185 - -0.1
2,361,185 - -0.7
2,361,185 - -0.3
2,361,185 - -0.7
2,361,185 - +0.1
2,361,185 - -0.2
2,361,222 + -0.2
2,361,222 + -0.4
2,361,222 + -0.1
2,361,222 + +0.8
2,361,222 + -1.4
2,361,222 + +0.8
2,361,222 + -0.8
2,361,222 + +2.0
2,361,222 + +0.5
2,361,222 + -0.3
2,361,222 + +0.0
2,361,222 + +0.2
2,361,223 - -1.5
2,361,223 - +0.3
2,361,223 - +0.2
2,361,223 - -0.5
2,361,223 - -2.1
2,361,223 - -1.6
2,361,223 - -0.1
2,361,223 - +0.9
2,361,223 - -0.2
2,361,223 - +0.4
2,361,223 - +0.5
2,361,223 - +0.2
2,361,223 - +0.2
2,361,223 - +0.7
2,361,223 - +0.0
2,361,223 - -0.6
2,361,223 - -0.9
2,361,223 - -0.3
2,361,223 - -0.2
2,361,660 + PfGW456L13_2157 0.36 -0.4
2,361,660 + PfGW456L13_2157 0.36 -1.3
2,361,660 + PfGW456L13_2157 0.36 -0.1
2,361,660 + PfGW456L13_2157 0.36 -0.4
2,361,660 + PfGW456L13_2157 0.36 +1.0
2,361,661 - PfGW456L13_2157 0.37 -2.5
2,361,661 - PfGW456L13_2157 0.37 -1.0
2,361,661 - PfGW456L13_2157 0.37 +1.4
2,361,732 + PfGW456L13_2157 0.43 -0.1
2,361,732 + PfGW456L13_2157 0.43 -1.1
2,361,732 + PfGW456L13_2157 0.43 -0.7
2,361,732 + PfGW456L13_2157 0.43 +0.6
2,361,732 + PfGW456L13_2157 0.43 +1.8
2,361,733 - PfGW456L13_2157 0.43 +0.4
2,361,733 - PfGW456L13_2157 0.43 +0.5
2,361,733 - PfGW456L13_2157 0.43 +1.4
2,361,816 + PfGW456L13_2157 0.50 +1.8
2,361,816 + PfGW456L13_2157 0.50 +0.5
2,361,817 - PfGW456L13_2157 0.50 -0.2
2,361,817 - PfGW456L13_2157 0.50 +0.7
2,361,817 - PfGW456L13_2157 0.50 -1.3
2,361,962 + PfGW456L13_2157 0.62 +0.1
2,361,963 - PfGW456L13_2157 0.62 +1.0
2,361,963 - PfGW456L13_2157 0.62 -1.8
2,362,204 - PfGW456L13_2157 0.82 -0.2
2,362,204 - PfGW456L13_2157 0.82 +0.4
2,362,240 - PfGW456L13_2157 0.85 +0.2
2,362,345 - -2.1
2,362,421 - -0.6
2,362,421 - +0.0
2,362,498 + -0.0
2,362,498 + +0.6
2,362,498 + +0.0
2,362,498 + -0.7
2,362,499 - +0.7
2,362,499 - +0.9
2,362,571 - +0.4
2,362,618 + -0.2
2,362,618 + -0.5
2,362,619 - +0.5
2,362,619 - +0.5
2,362,619 - +1.0
2,362,637 + -0.3
2,362,637 + +0.8
2,362,778 + PfGW456L13_2158 0.11 -1.2
2,362,840 + PfGW456L13_2158 0.17 +0.6
2,362,840 + PfGW456L13_2158 0.17 +1.2
2,362,841 - PfGW456L13_2158 0.17 +0.6
2,362,841 - PfGW456L13_2158 0.17 -0.1
2,362,841 - PfGW456L13_2158 0.17 +0.6
2,362,933 - PfGW456L13_2158 0.27 +0.9
2,362,936 + PfGW456L13_2158 0.27 +0.6
2,362,936 + PfGW456L13_2158 0.27 +0.7
2,362,936 + PfGW456L13_2158 0.27 +1.0
2,362,936 + PfGW456L13_2158 0.27 -0.3
2,362,936 + PfGW456L13_2158 0.27 +0.4
2,362,936 + PfGW456L13_2158 0.27 -0.1
2,362,936 + PfGW456L13_2158 0.27 +1.0
2,362,936 + PfGW456L13_2158 0.27 +0.9
2,362,936 + PfGW456L13_2158 0.27 +0.8
2,362,936 + PfGW456L13_2158 0.27 -1.0
2,362,936 + PfGW456L13_2158 0.27 +1.4
2,362,936 + PfGW456L13_2158 0.27 +0.5
2,362,936 + PfGW456L13_2158 0.27 +0.1
2,362,936 + PfGW456L13_2158 0.27 +0.7
2,362,936 + PfGW456L13_2158 0.27 -0.3
2,362,936 + PfGW456L13_2158 0.27 +0.3
2,362,936 + PfGW456L13_2158 0.27 -1.1
2,362,936 + PfGW456L13_2158 0.27 +1.2
2,362,936 + PfGW456L13_2158 0.27 +0.3
2,362,936 + PfGW456L13_2158 0.27 +1.0
2,362,936 + PfGW456L13_2158 0.27 +0.1
2,362,936 + PfGW456L13_2158 0.27 -1.0
2,362,936 + PfGW456L13_2158 0.27 -1.1
2,362,936 + PfGW456L13_2158 0.27 -0.9
2,362,937 - PfGW456L13_2158 0.27 -0.7
2,362,937 - PfGW456L13_2158 0.27 +0.5
2,362,937 - PfGW456L13_2158 0.27 -0.6
2,362,937 - PfGW456L13_2158 0.27 -0.4
2,362,937 - PfGW456L13_2158 0.27 -1.0
2,362,937 - PfGW456L13_2158 0.27 +0.2
2,362,937 - PfGW456L13_2158 0.27 -0.9
2,362,937 - PfGW456L13_2158 0.27 -0.1
2,362,937 - PfGW456L13_2158 0.27 +0.2
2,362,937 - PfGW456L13_2158 0.27 -0.3
2,362,937 - PfGW456L13_2158 0.27 -0.7
2,362,937 - PfGW456L13_2158 0.27 +0.2
2,362,937 - PfGW456L13_2158 0.27 +0.2
2,362,937 - PfGW456L13_2158 0.27 +1.2
2,362,937 - PfGW456L13_2158 0.27 +0.0
2,362,937 - PfGW456L13_2158 0.27 +0.6
2,362,937 - PfGW456L13_2158 0.27 +0.8
2,362,945 + PfGW456L13_2158 0.28 +0.3
2,362,945 + PfGW456L13_2158 0.28 -0.8
2,362,945 + PfGW456L13_2158 0.28 +0.6
2,362,945 + PfGW456L13_2158 0.28 +0.0
2,362,945 + -1.0
2,362,945 + PfGW456L13_2158 0.28 +0.6
2,362,945 + PfGW456L13_2158 0.28 +0.4
2,362,945 + PfGW456L13_2158 0.28 -0.2
2,362,946 - PfGW456L13_2158 0.28 -0.5
2,362,991 + PfGW456L13_2158 0.33 +0.8
2,363,081 + PfGW456L13_2158 0.42 -0.4
2,363,081 + PfGW456L13_2158 0.42 +0.2
2,363,149 + PfGW456L13_2158 0.49 +0.2
2,363,149 + PfGW456L13_2158 0.49 -1.3
2,363,150 - PfGW456L13_2158 0.49 -0.2
2,363,150 - PfGW456L13_2158 0.49 +1.1
2,363,200 + PfGW456L13_2158 0.55 +0.6
2,363,200 + PfGW456L13_2158 0.55 +0.2
2,363,200 + PfGW456L13_2158 0.55 -0.8
2,363,200 + PfGW456L13_2158 0.55 +0.3
2,363,200 + PfGW456L13_2158 0.55 +0.4
2,363,201 - PfGW456L13_2158 0.55 -0.2
2,363,201 - PfGW456L13_2158 0.55 +0.4
2,363,201 - PfGW456L13_2158 0.55 +1.0
2,363,263 + PfGW456L13_2158 0.61 -0.9
2,363,263 + PfGW456L13_2158 0.61 -0.1
2,363,263 + PfGW456L13_2158 0.61 -1.9
2,363,263 + PfGW456L13_2158 0.61 +0.4
2,363,264 - PfGW456L13_2158 0.61 -0.3
2,363,264 - PfGW456L13_2158 0.61 +0.1
2,363,264 - PfGW456L13_2158 0.61 -0.3
2,363,264 - PfGW456L13_2158 0.61 -0.9
2,363,264 - PfGW456L13_2158 0.61 +0.9
2,363,321 + PfGW456L13_2158 0.67 -2.2
2,363,321 + PfGW456L13_2158 0.67 +1.1
2,363,321 + PfGW456L13_2158 0.67 +2.4
2,363,322 - PfGW456L13_2158 0.67 +1.2
2,363,322 - PfGW456L13_2158 0.67 +0.9
2,363,322 - PfGW456L13_2158 0.67 -0.8
2,363,322 - PfGW456L13_2158 0.67 -0.3

Or see this region's nucleotide sequence