Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2108

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2107 and PfGW456L13_2108 overlap by 1 nucleotidesPfGW456L13_2108 and PfGW456L13_2109 are separated by 3 nucleotides PfGW456L13_2107 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 2,311,993 to 2,313,201 _2107 PfGW456L13_2108 - Aminodeoxychorismate lyase (EC 4.1.3.38), at 2,313,201 to 2,314,016 _2108 PfGW456L13_2109 - FIG004453: protein YceG like, at 2,314,020 to 2,315,252 _2109 Position (kb) 2313 2314 2315Strain fitness (log2 ratio) -3 -2 -1 0 1at 2312.379 kb on + strand, within PfGW456L13_2107at 2312.428 kb on + strand, within PfGW456L13_2107at 2312.428 kb on + strand, within PfGW456L13_2107at 2312.429 kb on - strand, within PfGW456L13_2107at 2312.448 kb on + strand, within PfGW456L13_2107at 2312.449 kb on - strand, within PfGW456L13_2107at 2312.494 kb on + strand, within PfGW456L13_2107at 2312.494 kb on + strand, within PfGW456L13_2107at 2312.648 kb on + strand, within PfGW456L13_2107at 2312.648 kb on + strand, within PfGW456L13_2107at 2312.676 kb on - strand, within PfGW456L13_2107at 2312.719 kb on + strand, within PfGW456L13_2107at 2312.719 kb on + strand, within PfGW456L13_2107at 2312.939 kb on - strand, within PfGW456L13_2107at 2313.264 kb on + strandat 2313.265 kb on - strandat 2313.408 kb on + strand, within PfGW456L13_2108at 2313.408 kb on + strand, within PfGW456L13_2108at 2313.535 kb on - strand, within PfGW456L13_2108at 2313.604 kb on + strand, within PfGW456L13_2108at 2313.814 kb on + strand, within PfGW456L13_2108at 2313.814 kb on + strand, within PfGW456L13_2108at 2313.815 kb on - strand, within PfGW456L13_2108at 2313.915 kb on + strand, within PfGW456L13_2108at 2313.915 kb on + strand, within PfGW456L13_2108at 2313.915 kb on + strand, within PfGW456L13_2108at 2313.915 kb on + strand, within PfGW456L13_2108at 2313.915 kb on + strand, within PfGW456L13_2108at 2313.915 kb on + strand, within PfGW456L13_2108at 2313.916 kb on - strand, within PfGW456L13_2108at 2313.916 kb on - strand, within PfGW456L13_2108at 2313.916 kb on - strand, within PfGW456L13_2108at 2313.916 kb on - strand, within PfGW456L13_2108at 2313.916 kb on - strand, within PfGW456L13_2108at 2313.916 kb on - strand, within PfGW456L13_2108at 2313.916 kb on - strand, within PfGW456L13_2108at 2313.939 kb on + strandat 2313.939 kb on + strandat 2314.017 kb on + strandat 2314.017 kb on + strandat 2314.017 kb on + strandat 2314.028 kb on + strandat 2314.114 kb on + strandat 2314.130 kb on + strandat 2314.236 kb on + strand, within PfGW456L13_2109at 2314.236 kb on + strand, within PfGW456L13_2109at 2314.427 kb on + strand, within PfGW456L13_2109at 2314.427 kb on + strand, within PfGW456L13_2109at 2314.427 kb on + strand, within PfGW456L13_2109at 2314.427 kb on + strand, within PfGW456L13_2109at 2314.515 kb on + strand, within PfGW456L13_2109at 2314.515 kb on + strand, within PfGW456L13_2109at 2314.515 kb on + strand, within PfGW456L13_2109at 2314.515 kb on + strand, within PfGW456L13_2109at 2314.515 kb on + strand, within PfGW456L13_2109at 2314.521 kb on + strand, within PfGW456L13_2109at 2314.616 kb on + strand, within PfGW456L13_2109at 2314.616 kb on + strand, within PfGW456L13_2109at 2314.623 kb on + strand, within PfGW456L13_2109at 2314.623 kb on + strand, within PfGW456L13_2109at 2314.623 kb on + strand, within PfGW456L13_2109at 2314.623 kb on + strand, within PfGW456L13_2109at 2314.623 kb on + strand, within PfGW456L13_2109at 2314.635 kb on + strand, within PfGW456L13_2109at 2314.767 kb on + strand, within PfGW456L13_2109at 2314.785 kb on + strand, within PfGW456L13_2109at 2314.830 kb on + strand, within PfGW456L13_2109at 2314.830 kb on + strand, within PfGW456L13_2109at 2314.830 kb on + strand, within PfGW456L13_2109at 2314.830 kb on + strand, within PfGW456L13_2109at 2314.830 kb on + strand, within PfGW456L13_2109at 2314.832 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.932 kb on + strand, within PfGW456L13_2109at 2314.932 kb on + strand, within PfGW456L13_2109

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,312,379 + PfGW456L13_2107 0.32 -0.1
2,312,428 + PfGW456L13_2107 0.36 -0.1
2,312,428 + PfGW456L13_2107 0.36 +1.4
2,312,429 - PfGW456L13_2107 0.36 -2.3
2,312,448 + PfGW456L13_2107 0.38 -0.4
2,312,449 - PfGW456L13_2107 0.38 +0.3
2,312,494 + PfGW456L13_2107 0.41 +1.4
2,312,494 + PfGW456L13_2107 0.41 -1.6
2,312,648 + PfGW456L13_2107 0.54 -1.2
2,312,648 + PfGW456L13_2107 0.54 -2.8
2,312,676 - PfGW456L13_2107 0.56 +1.0
2,312,719 + PfGW456L13_2107 0.60 +0.4
2,312,719 + PfGW456L13_2107 0.60 +0.6
2,312,939 - PfGW456L13_2107 0.78 -1.0
2,313,264 + -0.9
2,313,265 - -0.7
2,313,408 + PfGW456L13_2108 0.25 -1.3
2,313,408 + PfGW456L13_2108 0.25 -0.4
2,313,535 - PfGW456L13_2108 0.41 -1.0
2,313,604 + PfGW456L13_2108 0.49 -1.8
2,313,814 + PfGW456L13_2108 0.75 -2.8
2,313,814 + PfGW456L13_2108 0.75 -2.1
2,313,815 - PfGW456L13_2108 0.75 -0.6
2,313,915 + PfGW456L13_2108 0.88 -0.1
2,313,915 + PfGW456L13_2108 0.88 -1.3
2,313,915 + PfGW456L13_2108 0.88 -1.0
2,313,915 + PfGW456L13_2108 0.88 -2.1
2,313,915 + PfGW456L13_2108 0.88 -0.9
2,313,915 + PfGW456L13_2108 0.88 -1.7
2,313,916 - PfGW456L13_2108 0.88 -0.6
2,313,916 - PfGW456L13_2108 0.88 -2.1
2,313,916 - PfGW456L13_2108 0.88 -0.4
2,313,916 - PfGW456L13_2108 0.88 -2.5
2,313,916 - PfGW456L13_2108 0.88 -1.1
2,313,916 - PfGW456L13_2108 0.88 -0.4
2,313,916 - PfGW456L13_2108 0.88 -3.2
2,313,939 + -0.9
2,313,939 + -2.0
2,314,017 + +0.2
2,314,017 + -0.5
2,314,017 + +0.2
2,314,028 + +0.4
2,314,114 + +1.1
2,314,130 + -0.3
2,314,236 + PfGW456L13_2109 0.18 +1.1
2,314,236 + PfGW456L13_2109 0.18 +1.3
2,314,427 + PfGW456L13_2109 0.33 -1.9
2,314,427 + PfGW456L13_2109 0.33 +0.4
2,314,427 + PfGW456L13_2109 0.33 +0.6
2,314,427 + PfGW456L13_2109 0.33 +0.2
2,314,515 + PfGW456L13_2109 0.40 -1.3
2,314,515 + PfGW456L13_2109 0.40 +0.2
2,314,515 + PfGW456L13_2109 0.40 -0.8
2,314,515 + PfGW456L13_2109 0.40 -0.2
2,314,515 + PfGW456L13_2109 0.40 +0.1
2,314,521 + PfGW456L13_2109 0.41 -0.6
2,314,616 + PfGW456L13_2109 0.48 -0.8
2,314,616 + PfGW456L13_2109 0.48 -0.2
2,314,623 + PfGW456L13_2109 0.49 +1.5
2,314,623 + PfGW456L13_2109 0.49 +0.7
2,314,623 + PfGW456L13_2109 0.49 +0.2
2,314,623 + PfGW456L13_2109 0.49 +1.1
2,314,623 + PfGW456L13_2109 0.49 -0.2
2,314,635 + PfGW456L13_2109 0.50 +1.2
2,314,767 + PfGW456L13_2109 0.61 +0.1
2,314,785 + PfGW456L13_2109 0.62 -0.9
2,314,830 + PfGW456L13_2109 0.66 -0.7
2,314,830 + PfGW456L13_2109 0.66 +0.8
2,314,830 + PfGW456L13_2109 0.66 -1.1
2,314,830 + PfGW456L13_2109 0.66 -0.5
2,314,830 + PfGW456L13_2109 0.66 +1.1
2,314,832 + PfGW456L13_2109 0.66 +0.9
2,314,839 + PfGW456L13_2109 0.66 -1.3
2,314,839 + PfGW456L13_2109 0.66 +0.9
2,314,839 + PfGW456L13_2109 0.66 -0.1
2,314,839 + PfGW456L13_2109 0.66 -0.4
2,314,839 + PfGW456L13_2109 0.66 -1.6
2,314,839 + PfGW456L13_2109 0.66 +0.6
2,314,839 + PfGW456L13_2109 0.66 -0.6
2,314,839 + PfGW456L13_2109 0.66 -0.3
2,314,839 + PfGW456L13_2109 0.66 +0.4
2,314,839 + PfGW456L13_2109 0.66 -1.8
2,314,839 + PfGW456L13_2109 0.66 +0.6
2,314,839 + PfGW456L13_2109 0.66 -0.1
2,314,839 + PfGW456L13_2109 0.66 -0.2
2,314,839 + PfGW456L13_2109 0.66 +0.2
2,314,932 + PfGW456L13_2109 0.74 +0.6
2,314,932 + PfGW456L13_2109 0.74 +0.3

Or see this region's nucleotide sequence