Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2093 and PfGW456L13_2094 overlap by 4 nucleotides PfGW456L13_2094 and PfGW456L13_2095 are separated by 187 nucleotides PfGW456L13_2095 and PfGW456L13_2096 are separated by 90 nucleotides PfGW456L13_2096 and PfGW456L13_2097 are separated by 486 nucleotides
PfGW456L13_2093 - Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family, at 2,298,761 to 2,299,744
_2093
PfGW456L13_2094 - CTP:molybdopterin cytidylyltransferase, at 2,299,741 to 2,300,337
_2094
PfGW456L13_2095 - Ribonuclease E (EC 3.1.26.12), at 2,300,525 to 2,303,779
_2095
PfGW456L13_2096 - hypothetical protein, at 2,303,870 to 2,304,004
_2096
PfGW456L13_2097 - Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70), at 2,304,491 to 2,305,453
_2097
Position (kb)
2300
2301
2302
2303
2304 Strain fitness (log2 ratio)
-1
0
1
2 at 2299.645 kb on + strand, within PfGW456L13_2093 at 2299.645 kb on + strand, within PfGW456L13_2093 at 2299.646 kb on - strand at 2299.646 kb on - strand at 2299.646 kb on - strand at 2299.740 kb on + strand at 2299.740 kb on + strand at 2299.740 kb on + strand at 2299.741 kb on - strand at 2299.741 kb on - strand at 2299.741 kb on - strand at 2299.741 kb on - strand at 2299.741 kb on - strand at 2299.741 kb on - strand at 2299.917 kb on - strand, within PfGW456L13_2094 at 2299.966 kb on + strand, within PfGW456L13_2094 at 2299.966 kb on + strand, within PfGW456L13_2094 at 2300.133 kb on + strand, within PfGW456L13_2094 at 2300.133 kb on + strand, within PfGW456L13_2094 at 2300.133 kb on + strand, within PfGW456L13_2094 at 2300.133 kb on + strand, within PfGW456L13_2094 at 2300.214 kb on - strand, within PfGW456L13_2094 at 2300.335 kb on + strand at 2300.335 kb on + strand at 2300.335 kb on + strand at 2300.335 kb on + strand at 2300.335 kb on + strand at 2300.335 kb on + strand at 2300.335 kb on + strand at 2300.335 kb on + strand at 2300.335 kb on + strand at 2300.335 kb on + strand at 2300.335 kb on + strand at 2300.335 kb on + strand at 2300.335 kb on + strand at 2300.335 kb on + strand at 2300.335 kb on + strand at 2300.335 kb on + strand at 2300.335 kb on + strand at 2300.336 kb on - strand at 2300.336 kb on - strand at 2300.336 kb on - strand at 2300.336 kb on - strand at 2300.336 kb on - strand at 2300.336 kb on - strand at 2300.336 kb on - strand at 2300.336 kb on - strand at 2300.381 kb on + strand at 2300.382 kb on - strand at 2300.382 kb on - strand at 2300.540 kb on - strand at 2300.580 kb on - strand at 2301.111 kb on - strand, within PfGW456L13_2095 at 2301.111 kb on - strand, within PfGW456L13_2095 at 2301.111 kb on - strand, within PfGW456L13_2095 at 2301.111 kb on - strand, within PfGW456L13_2095 at 2304.120 kb on - strand at 2304.120 kb on - strand at 2304.233 kb on - strand at 2304.233 kb on - strand at 2304.303 kb on - strand at 2304.324 kb on - strand at 2304.324 kb on - strand at 2304.436 kb on - strand at 2304.438 kb on - strand at 2304.451 kb on - strand at 2304.522 kb on + strand at 2304.522 kb on + strand at 2304.569 kb on - strand at 2304.569 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 2,299,645 + PfGW456L13_2093 0.90 +0.1 2,299,645 + PfGW456L13_2093 0.90 +0.2 2,299,646 - -0.3 2,299,646 - +0.3 2,299,646 - -1.1 2,299,740 + +0.2 2,299,740 + +0.9 2,299,740 + +0.5 2,299,741 - +0.7 2,299,741 - -0.1 2,299,741 - +0.1 2,299,741 - +0.2 2,299,741 - -0.2 2,299,741 - +0.6 2,299,917 - PfGW456L13_2094 0.29 -0.2 2,299,966 + PfGW456L13_2094 0.38 +1.1 2,299,966 + PfGW456L13_2094 0.38 +0.8 2,300,133 + PfGW456L13_2094 0.66 +1.0 2,300,133 + PfGW456L13_2094 0.66 -0.3 2,300,133 + PfGW456L13_2094 0.66 -0.9 2,300,133 + PfGW456L13_2094 0.66 +1.4 2,300,214 - PfGW456L13_2094 0.79 +0.4 2,300,335 + -1.1 2,300,335 + +0.2 2,300,335 + -0.6 2,300,335 + +0.0 2,300,335 + -0.2 2,300,335 + +0.8 2,300,335 + +0.9 2,300,335 + +0.1 2,300,335 + +1.1 2,300,335 + -1.7 2,300,335 + -0.6 2,300,335 + +0.5 2,300,335 + -0.3 2,300,335 + +0.1 2,300,335 + -0.5 2,300,335 + -0.8 2,300,335 + +0.8 2,300,336 - +0.8 2,300,336 - +1.2 2,300,336 - +0.2 2,300,336 - +0.4 2,300,336 - +0.0 2,300,336 - +0.5 2,300,336 - -0.6 2,300,336 - +0.6 2,300,381 + -0.3 2,300,382 - -0.6 2,300,382 - +0.4 2,300,540 - +0.2 2,300,580 - +0.0 2,301,111 - PfGW456L13_2095 0.18 -0.9 2,301,111 - PfGW456L13_2095 0.18 +0.6 2,301,111 - PfGW456L13_2095 0.18 +0.2 2,301,111 - PfGW456L13_2095 0.18 +1.4 2,304,120 - +1.1 2,304,120 - +1.1 2,304,233 - +0.0 2,304,233 - +0.8 2,304,303 - +2.0 2,304,324 - -0.7 2,304,324 - -1.4 2,304,436 - -0.1 2,304,438 - -1.4 2,304,451 - -0.8 2,304,522 + +0.9 2,304,522 + -1.6 2,304,569 - -0.8 2,304,569 - -0.4
Or see this region's nucleotide sequence