Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2095

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2093 and PfGW456L13_2094 overlap by 4 nucleotidesPfGW456L13_2094 and PfGW456L13_2095 are separated by 187 nucleotidesPfGW456L13_2095 and PfGW456L13_2096 are separated by 90 nucleotidesPfGW456L13_2096 and PfGW456L13_2097 are separated by 486 nucleotides PfGW456L13_2093 - Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family, at 2,298,761 to 2,299,744 _2093 PfGW456L13_2094 - CTP:molybdopterin cytidylyltransferase, at 2,299,741 to 2,300,337 _2094 PfGW456L13_2095 - Ribonuclease E (EC 3.1.26.12), at 2,300,525 to 2,303,779 _2095 PfGW456L13_2096 - hypothetical protein, at 2,303,870 to 2,304,004 _2096 PfGW456L13_2097 - Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70), at 2,304,491 to 2,305,453 _2097 Position (kb) 2300 2301 2302 2303 2304Strain fitness (log2 ratio) -1 0 1 2at 2299.645 kb on + strand, within PfGW456L13_2093at 2299.645 kb on + strand, within PfGW456L13_2093at 2299.646 kb on - strandat 2299.646 kb on - strandat 2299.646 kb on - strandat 2299.740 kb on + strandat 2299.740 kb on + strandat 2299.740 kb on + strandat 2299.741 kb on - strandat 2299.741 kb on - strandat 2299.741 kb on - strandat 2299.741 kb on - strandat 2299.741 kb on - strandat 2299.741 kb on - strandat 2299.917 kb on - strand, within PfGW456L13_2094at 2299.966 kb on + strand, within PfGW456L13_2094at 2299.966 kb on + strand, within PfGW456L13_2094at 2300.133 kb on + strand, within PfGW456L13_2094at 2300.133 kb on + strand, within PfGW456L13_2094at 2300.133 kb on + strand, within PfGW456L13_2094at 2300.133 kb on + strand, within PfGW456L13_2094at 2300.214 kb on - strand, within PfGW456L13_2094at 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.336 kb on - strandat 2300.336 kb on - strandat 2300.336 kb on - strandat 2300.336 kb on - strandat 2300.336 kb on - strandat 2300.336 kb on - strandat 2300.336 kb on - strandat 2300.336 kb on - strandat 2300.381 kb on + strandat 2300.382 kb on - strandat 2300.382 kb on - strandat 2300.540 kb on - strandat 2300.580 kb on - strandat 2301.111 kb on - strand, within PfGW456L13_2095at 2301.111 kb on - strand, within PfGW456L13_2095at 2301.111 kb on - strand, within PfGW456L13_2095at 2301.111 kb on - strand, within PfGW456L13_2095at 2304.120 kb on - strandat 2304.120 kb on - strandat 2304.233 kb on - strandat 2304.233 kb on - strandat 2304.303 kb on - strandat 2304.324 kb on - strandat 2304.324 kb on - strandat 2304.436 kb on - strandat 2304.438 kb on - strandat 2304.451 kb on - strandat 2304.522 kb on + strandat 2304.522 kb on + strandat 2304.569 kb on - strandat 2304.569 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,299,645 + PfGW456L13_2093 0.90 +0.1
2,299,645 + PfGW456L13_2093 0.90 +0.2
2,299,646 - -0.3
2,299,646 - +0.3
2,299,646 - -1.1
2,299,740 + +0.2
2,299,740 + +0.9
2,299,740 + +0.5
2,299,741 - +0.7
2,299,741 - -0.1
2,299,741 - +0.1
2,299,741 - +0.2
2,299,741 - -0.2
2,299,741 - +0.6
2,299,917 - PfGW456L13_2094 0.29 -0.2
2,299,966 + PfGW456L13_2094 0.38 +1.1
2,299,966 + PfGW456L13_2094 0.38 +0.8
2,300,133 + PfGW456L13_2094 0.66 +1.0
2,300,133 + PfGW456L13_2094 0.66 -0.3
2,300,133 + PfGW456L13_2094 0.66 -0.9
2,300,133 + PfGW456L13_2094 0.66 +1.4
2,300,214 - PfGW456L13_2094 0.79 +0.4
2,300,335 + -1.1
2,300,335 + +0.2
2,300,335 + -0.6
2,300,335 + +0.0
2,300,335 + -0.2
2,300,335 + +0.8
2,300,335 + +0.9
2,300,335 + +0.1
2,300,335 + +1.1
2,300,335 + -1.7
2,300,335 + -0.6
2,300,335 + +0.5
2,300,335 + -0.3
2,300,335 + +0.1
2,300,335 + -0.5
2,300,335 + -0.8
2,300,335 + +0.8
2,300,336 - +0.8
2,300,336 - +1.2
2,300,336 - +0.2
2,300,336 - +0.4
2,300,336 - +0.0
2,300,336 - +0.5
2,300,336 - -0.6
2,300,336 - +0.6
2,300,381 + -0.3
2,300,382 - -0.6
2,300,382 - +0.4
2,300,540 - +0.2
2,300,580 - +0.0
2,301,111 - PfGW456L13_2095 0.18 -0.9
2,301,111 - PfGW456L13_2095 0.18 +0.6
2,301,111 - PfGW456L13_2095 0.18 +0.2
2,301,111 - PfGW456L13_2095 0.18 +1.4
2,304,120 - +1.1
2,304,120 - +1.1
2,304,233 - +0.0
2,304,233 - +0.8
2,304,303 - +2.0
2,304,324 - -0.7
2,304,324 - -1.4
2,304,436 - -0.1
2,304,438 - -1.4
2,304,451 - -0.8
2,304,522 + +0.9
2,304,522 + -1.6
2,304,569 - -0.8
2,304,569 - -0.4

Or see this region's nucleotide sequence