Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1363

Experiment: L-Phenylalanine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_1362 and PfGW456L13_1363 overlap by 1 nucleotidesPfGW456L13_1363 and PfGW456L13_1364 are separated by 184 nucleotides PfGW456L13_1362 - Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-), at 1,506,758 to 1,507,768 _1362 PfGW456L13_1363 - Rare lipoprotein A precursor, at 1,507,768 to 1,508,778 _1363 PfGW456L13_1364 - D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4), at 1,508,963 to 1,510,120 _1364 Position (kb) 1507 1508 1509Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1506.810 kb on + strandat 1506.811 kb on - strandat 1506.811 kb on - strandat 1506.851 kb on + strandat 1507.045 kb on - strand, within PfGW456L13_1362at 1507.106 kb on + strand, within PfGW456L13_1362at 1507.106 kb on + strand, within PfGW456L13_1362at 1507.165 kb on + strand, within PfGW456L13_1362at 1507.166 kb on - strand, within PfGW456L13_1362at 1507.313 kb on + strand, within PfGW456L13_1362at 1507.313 kb on + strand, within PfGW456L13_1362at 1507.313 kb on + strand, within PfGW456L13_1362at 1507.313 kb on + strand, within PfGW456L13_1362at 1507.313 kb on + strand, within PfGW456L13_1362at 1507.314 kb on - strand, within PfGW456L13_1362at 1507.364 kb on + strand, within PfGW456L13_1362at 1507.365 kb on - strand, within PfGW456L13_1362at 1507.394 kb on - strand, within PfGW456L13_1362at 1507.443 kb on - strand, within PfGW456L13_1362at 1507.443 kb on - strand, within PfGW456L13_1362at 1507.479 kb on + strand, within PfGW456L13_1362at 1507.606 kb on + strand, within PfGW456L13_1362at 1507.606 kb on + strand, within PfGW456L13_1362at 1507.606 kb on + strand, within PfGW456L13_1362at 1507.606 kb on + strand, within PfGW456L13_1362at 1507.606 kb on + strand, within PfGW456L13_1362at 1507.606 kb on + strand, within PfGW456L13_1362at 1507.606 kb on + strand, within PfGW456L13_1362at 1507.606 kb on + strand, within PfGW456L13_1362at 1507.693 kb on + strandat 1507.693 kb on + strandat 1507.709 kb on + strandat 1507.709 kb on + strandat 1507.709 kb on + strandat 1507.709 kb on + strandat 1507.709 kb on + strandat 1507.709 kb on + strandat 1507.709 kb on + strandat 1507.709 kb on + strandat 1507.709 kb on + strandat 1507.709 kb on + strandat 1507.709 kb on + strandat 1507.709 kb on + strandat 1507.722 kb on + strandat 1507.722 kb on + strandat 1507.722 kb on + strandat 1507.722 kb on + strandat 1507.722 kb on + strandat 1507.766 kb on + strandat 1507.766 kb on + strandat 1507.766 kb on + strandat 1507.767 kb on - strandat 1507.788 kb on + strandat 1507.788 kb on + strandat 1507.788 kb on + strandat 1507.999 kb on + strand, within PfGW456L13_1363at 1508.035 kb on + strand, within PfGW456L13_1363at 1508.062 kb on + strand, within PfGW456L13_1363at 1508.063 kb on - strand, within PfGW456L13_1363at 1508.134 kb on + strand, within PfGW456L13_1363at 1508.134 kb on + strand, within PfGW456L13_1363at 1508.134 kb on + strand, within PfGW456L13_1363at 1508.134 kb on + strand, within PfGW456L13_1363at 1508.134 kb on + strand, within PfGW456L13_1363at 1508.135 kb on - strand, within PfGW456L13_1363at 1508.185 kb on + strand, within PfGW456L13_1363at 1508.185 kb on + strand, within PfGW456L13_1363at 1508.185 kb on + strand, within PfGW456L13_1363at 1508.390 kb on + strand, within PfGW456L13_1363at 1508.421 kb on + strand, within PfGW456L13_1363at 1508.779 kb on + strandat 1508.779 kb on + strandat 1508.779 kb on + strandat 1508.779 kb on + strandat 1508.779 kb on + strandat 1508.779 kb on + strandat 1508.779 kb on + strandat 1508.779 kb on + strandat 1508.779 kb on + strandat 1508.779 kb on + strandat 1508.779 kb on + strandat 1508.779 kb on + strandat 1508.779 kb on + strandat 1508.780 kb on - strandat 1508.780 kb on - strandat 1508.780 kb on - strandat 1508.783 kb on + strandat 1508.783 kb on + strandat 1508.783 kb on + strandat 1508.783 kb on + strandat 1508.784 kb on - strandat 1508.784 kb on - strandat 1508.784 kb on - strandat 1508.901 kb on + strandat 1508.917 kb on + strandat 1508.917 kb on + strandat 1509.684 kb on + strand, within PfGW456L13_1364at 1509.770 kb on + strand, within PfGW456L13_1364

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
remove
1,506,810 + -0.4
1,506,811 - -0.3
1,506,811 - -0.5
1,506,851 + -0.9
1,507,045 - PfGW456L13_1362 0.28 -0.7
1,507,106 + PfGW456L13_1362 0.34 +1.0
1,507,106 + PfGW456L13_1362 0.34 -0.3
1,507,165 + PfGW456L13_1362 0.40 +0.5
1,507,166 - PfGW456L13_1362 0.40 +0.5
1,507,313 + PfGW456L13_1362 0.55 +1.2
1,507,313 + PfGW456L13_1362 0.55 -0.3
1,507,313 + PfGW456L13_1362 0.55 -0.0
1,507,313 + PfGW456L13_1362 0.55 -0.2
1,507,313 + PfGW456L13_1362 0.55 +0.9
1,507,314 - PfGW456L13_1362 0.55 +0.6
1,507,364 + PfGW456L13_1362 0.60 +0.0
1,507,365 - PfGW456L13_1362 0.60 +0.6
1,507,394 - PfGW456L13_1362 0.63 -0.3
1,507,443 - PfGW456L13_1362 0.68 +0.2
1,507,443 - PfGW456L13_1362 0.68 +0.7
1,507,479 + PfGW456L13_1362 0.71 +0.0
1,507,606 + PfGW456L13_1362 0.84 -0.4
1,507,606 + PfGW456L13_1362 0.84 +1.1
1,507,606 + PfGW456L13_1362 0.84 +0.8
1,507,606 + PfGW456L13_1362 0.84 -0.3
1,507,606 + PfGW456L13_1362 0.84 -0.3
1,507,606 + PfGW456L13_1362 0.84 -0.4
1,507,606 + PfGW456L13_1362 0.84 -0.3
1,507,606 + PfGW456L13_1362 0.84 -0.8
1,507,693 + -0.1
1,507,693 + +0.5
1,507,709 + +0.4
1,507,709 + -0.3
1,507,709 + -0.7
1,507,709 + +0.9
1,507,709 + -0.8
1,507,709 + -0.2
1,507,709 + -0.4
1,507,709 + -0.4
1,507,709 + +0.1
1,507,709 + -0.8
1,507,709 + -0.2
1,507,709 + +0.6
1,507,722 + +0.7
1,507,722 + -1.1
1,507,722 + +0.5
1,507,722 + +0.5
1,507,722 + -0.5
1,507,766 + +1.6
1,507,766 + +0.2
1,507,766 + -0.3
1,507,767 - -2.5
1,507,788 + +0.0
1,507,788 + -0.0
1,507,788 + -1.7
1,507,999 + PfGW456L13_1363 0.23 +0.3
1,508,035 + PfGW456L13_1363 0.26 +0.2
1,508,062 + PfGW456L13_1363 0.29 -3.6
1,508,063 - PfGW456L13_1363 0.29 -1.3
1,508,134 + PfGW456L13_1363 0.36 -4.0
1,508,134 + PfGW456L13_1363 0.36 -1.2
1,508,134 + PfGW456L13_1363 0.36 -3.0
1,508,134 + PfGW456L13_1363 0.36 -1.2
1,508,134 + PfGW456L13_1363 0.36 -0.5
1,508,135 - PfGW456L13_1363 0.36 -2.3
1,508,185 + PfGW456L13_1363 0.41 -2.6
1,508,185 + PfGW456L13_1363 0.41 -3.4
1,508,185 + PfGW456L13_1363 0.41 -3.0
1,508,390 + PfGW456L13_1363 0.62 -1.7
1,508,421 + PfGW456L13_1363 0.65 -1.7
1,508,779 + +1.1
1,508,779 + +1.6
1,508,779 + +0.6
1,508,779 + -1.6
1,508,779 + -0.1
1,508,779 + -0.8
1,508,779 + +1.8
1,508,779 + +0.9
1,508,779 + -0.2
1,508,779 + +0.2
1,508,779 + +0.9
1,508,779 + -0.3
1,508,779 + +0.2
1,508,780 - +0.3
1,508,780 - -2.8
1,508,780 - -0.4
1,508,783 + +0.7
1,508,783 + +1.1
1,508,783 + +0.1
1,508,783 + -0.2
1,508,784 - -1.0
1,508,784 - -0.1
1,508,784 - -2.0
1,508,901 + -0.1
1,508,917 + +0.5
1,508,917 + -0.2
1,509,684 + PfGW456L13_1364 0.62 -1.5
1,509,770 + PfGW456L13_1364 0.70 -1.3

Or see this region's nucleotide sequence