Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2203

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2202 and Echvi_2203 are separated by 4 nucleotidesEchvi_2203 and Echvi_2204 are separated by 134 nucleotides Echvi_2202: Echvi_2202 - branched-chain amino acid aminotransferase, group II, at 2,629,150 to 2,630,217 _2202 Echvi_2203: Echvi_2203 - ATP:cob(I)alamin adenosyltransferase, at 2,630,222 to 2,630,770 _2203 Echvi_2204: Echvi_2204 - ABC-type antimicrobial peptide transport system, ATPase component, at 2,630,905 to 2,631,627 _2204 Position (kb) 2630 2631Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2629.290 kb on - strand, within Echvi_2202at 2629.471 kb on - strand, within Echvi_2202at 2629.561 kb on + strand, within Echvi_2202at 2629.671 kb on - strand, within Echvi_2202at 2629.681 kb on + strand, within Echvi_2202at 2629.737 kb on + strand, within Echvi_2202at 2629.744 kb on - strand, within Echvi_2202at 2629.761 kb on + strand, within Echvi_2202at 2629.772 kb on + strand, within Echvi_2202at 2629.773 kb on - strand, within Echvi_2202at 2629.773 kb on - strand, within Echvi_2202at 2629.773 kb on - strand, within Echvi_2202at 2629.792 kb on - strand, within Echvi_2202at 2629.805 kb on + strand, within Echvi_2202at 2629.864 kb on + strand, within Echvi_2202at 2629.879 kb on + strand, within Echvi_2202at 2629.959 kb on + strand, within Echvi_2202at 2629.960 kb on - strand, within Echvi_2202at 2629.960 kb on - strand, within Echvi_2202at 2629.960 kb on - strand, within Echvi_2202at 2629.960 kb on - strand, within Echvi_2202at 2629.960 kb on - strand, within Echvi_2202at 2629.963 kb on + strand, within Echvi_2202at 2629.964 kb on - strand, within Echvi_2202at 2629.971 kb on + strand, within Echvi_2202at 2629.971 kb on + strand, within Echvi_2202at 2629.972 kb on - strand, within Echvi_2202at 2629.985 kb on + strand, within Echvi_2202at 2630.128 kb on + strandat 2630.129 kb on - strandat 2630.203 kb on + strandat 2630.221 kb on - strandat 2630.252 kb on + strandat 2630.258 kb on + strandat 2630.258 kb on + strandat 2630.258 kb on + strandat 2630.264 kb on + strandat 2630.286 kb on - strand, within Echvi_2203at 2630.296 kb on - strand, within Echvi_2203at 2630.317 kb on - strand, within Echvi_2203at 2630.332 kb on + strand, within Echvi_2203at 2630.409 kb on + strand, within Echvi_2203at 2630.438 kb on + strand, within Echvi_2203at 2630.460 kb on - strand, within Echvi_2203at 2630.563 kb on + strand, within Echvi_2203at 2630.576 kb on - strand, within Echvi_2203at 2630.760 kb on + strandat 2630.761 kb on - strandat 2630.853 kb on - strandat 2630.853 kb on - strandat 2630.894 kb on + strandat 2630.903 kb on + strandat 2630.906 kb on + strandat 2630.981 kb on - strand, within Echvi_2204at 2631.002 kb on + strand, within Echvi_2204at 2631.003 kb on - strand, within Echvi_2204at 2631.036 kb on + strand, within Echvi_2204at 2631.036 kb on + strand, within Echvi_2204at 2631.037 kb on - strand, within Echvi_2204at 2631.037 kb on - strand, within Echvi_2204at 2631.081 kb on + strand, within Echvi_2204at 2631.114 kb on + strand, within Echvi_2204at 2631.132 kb on + strand, within Echvi_2204at 2631.136 kb on - strand, within Echvi_2204at 2631.148 kb on + strand, within Echvi_2204at 2631.291 kb on - strand, within Echvi_2204at 2631.428 kb on - strand, within Echvi_2204at 2631.434 kb on + strand, within Echvi_2204at 2631.435 kb on - strand, within Echvi_2204at 2631.435 kb on - strand, within Echvi_2204at 2631.521 kb on + strand, within Echvi_2204at 2631.522 kb on - strand, within Echvi_2204at 2631.522 kb on - strand, within Echvi_2204at 2631.541 kb on + strand, within Echvi_2204at 2631.541 kb on + strand, within Echvi_2204at 2631.541 kb on + strand, within Echvi_2204at 2631.541 kb on + strand, within Echvi_2204at 2631.541 kb on + strand, within Echvi_2204at 2631.541 kb on + strand, within Echvi_2204at 2631.542 kb on - strand, within Echvi_2204at 2631.542 kb on - strand, within Echvi_2204at 2631.542 kb on - strand, within Echvi_2204at 2631.542 kb on - strand, within Echvi_2204at 2631.542 kb on - strand, within Echvi_2204at 2631.542 kb on - strand, within Echvi_2204at 2631.542 kb on - strand, within Echvi_2204at 2631.544 kb on - strand, within Echvi_2204at 2631.544 kb on - strand, within Echvi_2204at 2631.588 kb on - strandat 2631.681 kb on - strandat 2631.696 kb on + strandat 2631.706 kb on - strandat 2631.723 kb on + strandat 2631.724 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,629,290 - Echvi_2202 0.13 +1.1
2,629,471 - Echvi_2202 0.30 -0.4
2,629,561 + Echvi_2202 0.38 +0.1
2,629,671 - Echvi_2202 0.49 -0.7
2,629,681 + Echvi_2202 0.50 -0.7
2,629,737 + Echvi_2202 0.55 +1.0
2,629,744 - Echvi_2202 0.56 -0.5
2,629,761 + Echvi_2202 0.57 -1.0
2,629,772 + Echvi_2202 0.58 -1.9
2,629,773 - Echvi_2202 0.58 -0.4
2,629,773 - Echvi_2202 0.58 +0.0
2,629,773 - Echvi_2202 0.58 +0.1
2,629,792 - Echvi_2202 0.60 +0.8
2,629,805 + Echvi_2202 0.61 +0.9
2,629,864 + Echvi_2202 0.67 -0.5
2,629,879 + Echvi_2202 0.68 +0.4
2,629,959 + Echvi_2202 0.76 +1.0
2,629,960 - Echvi_2202 0.76 +2.1
2,629,960 - Echvi_2202 0.76 +1.2
2,629,960 - Echvi_2202 0.76 -0.9
2,629,960 - Echvi_2202 0.76 -1.5
2,629,960 - Echvi_2202 0.76 +0.2
2,629,963 + Echvi_2202 0.76 -0.5
2,629,964 - Echvi_2202 0.76 -0.3
2,629,971 + Echvi_2202 0.77 +1.4
2,629,971 + Echvi_2202 0.77 -2.0
2,629,972 - Echvi_2202 0.77 +0.7
2,629,985 + Echvi_2202 0.78 +1.3
2,630,128 + +0.9
2,630,129 - +0.8
2,630,203 + -0.2
2,630,221 - +0.0
2,630,252 + +0.2
2,630,258 + +0.2
2,630,258 + +0.1
2,630,258 + -0.7
2,630,264 + -0.5
2,630,286 - Echvi_2203 0.12 -0.0
2,630,296 - Echvi_2203 0.13 -1.2
2,630,317 - Echvi_2203 0.17 -0.3
2,630,332 + Echvi_2203 0.20 -1.7
2,630,409 + Echvi_2203 0.34 -1.8
2,630,438 + Echvi_2203 0.39 -2.1
2,630,460 - Echvi_2203 0.43 -1.1
2,630,563 + Echvi_2203 0.62 -0.7
2,630,576 - Echvi_2203 0.64 -0.4
2,630,760 + +0.0
2,630,761 - -1.5
2,630,853 - +2.8
2,630,853 - -1.5
2,630,894 + +0.2
2,630,903 + -0.6
2,630,906 + -0.4
2,630,981 - Echvi_2204 0.11 +0.2
2,631,002 + Echvi_2204 0.13 -0.6
2,631,003 - Echvi_2204 0.14 +0.8
2,631,036 + Echvi_2204 0.18 -0.2
2,631,036 + Echvi_2204 0.18 +0.4
2,631,037 - Echvi_2204 0.18 -0.9
2,631,037 - Echvi_2204 0.18 -0.0
2,631,081 + Echvi_2204 0.24 -0.2
2,631,114 + Echvi_2204 0.29 +0.6
2,631,132 + Echvi_2204 0.31 -0.5
2,631,136 - Echvi_2204 0.32 -1.9
2,631,148 + Echvi_2204 0.34 -0.7
2,631,291 - Echvi_2204 0.53 -0.5
2,631,428 - Echvi_2204 0.72 -0.8
2,631,434 + Echvi_2204 0.73 -0.1
2,631,435 - Echvi_2204 0.73 +2.2
2,631,435 - Echvi_2204 0.73 +0.8
2,631,521 + Echvi_2204 0.85 +0.3
2,631,522 - Echvi_2204 0.85 -0.8
2,631,522 - Echvi_2204 0.85 +0.1
2,631,541 + Echvi_2204 0.88 -0.7
2,631,541 + Echvi_2204 0.88 -2.0
2,631,541 + Echvi_2204 0.88 +0.1
2,631,541 + Echvi_2204 0.88 +0.5
2,631,541 + Echvi_2204 0.88 +0.8
2,631,541 + Echvi_2204 0.88 -1.2
2,631,542 - Echvi_2204 0.88 -0.7
2,631,542 - Echvi_2204 0.88 +0.4
2,631,542 - Echvi_2204 0.88 +0.2
2,631,542 - Echvi_2204 0.88 +0.2
2,631,542 - Echvi_2204 0.88 +0.4
2,631,542 - Echvi_2204 0.88 -0.4
2,631,542 - Echvi_2204 0.88 -0.2
2,631,544 - Echvi_2204 0.88 -0.0
2,631,544 - Echvi_2204 0.88 -1.0
2,631,588 - -0.9
2,631,681 - -0.0
2,631,696 + -1.3
2,631,706 - +1.8
2,631,723 + +0.2
2,631,724 - +0.5

Or see this region's nucleotide sequence