Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20665

Experiment: m.b. Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20660 and CA264_20665 are separated by 270 nucleotidesCA264_20665 and CA264_20670 are separated by 68 nucleotides CA264_20660: CA264_20660 - methylmalonyl Co-A mutase-associated GTPase MeaB, at 4,755,183 to 4,756,163 _20660 CA264_20665: CA264_20665 - hypothetical protein, at 4,756,434 to 4,757,828 _20665 CA264_20670: CA264_20670 - hypothetical protein, at 4,757,897 to 4,759,018 _20670 Position (kb) 4756 4757 4758Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4755.742 kb on - strand, within CA264_20660at 4755.743 kb on + strand, within CA264_20660at 4755.743 kb on + strand, within CA264_20660at 4755.743 kb on + strand, within CA264_20660at 4755.743 kb on + strand, within CA264_20660at 4755.744 kb on - strand, within CA264_20660at 4755.822 kb on - strand, within CA264_20660at 4755.935 kb on - strand, within CA264_20660at 4756.036 kb on - strand, within CA264_20660at 4756.131 kb on + strandat 4756.131 kb on + strandat 4756.131 kb on + strandat 4756.132 kb on - strandat 4756.132 kb on - strandat 4756.132 kb on - strandat 4756.135 kb on + strandat 4756.178 kb on - strandat 4756.183 kb on + strandat 4756.184 kb on - strandat 4756.219 kb on - strandat 4756.219 kb on - strandat 4756.255 kb on + strandat 4756.256 kb on - strandat 4756.308 kb on - strandat 4756.316 kb on - strandat 4756.328 kb on - strandat 4756.335 kb on + strandat 4756.336 kb on - strandat 4756.336 kb on - strandat 4756.350 kb on + strandat 4756.429 kb on - strandat 4756.505 kb on - strandat 4756.571 kb on - strandat 4756.608 kb on - strand, within CA264_20665at 4756.734 kb on + strand, within CA264_20665at 4756.735 kb on - strand, within CA264_20665at 4756.748 kb on + strand, within CA264_20665at 4756.835 kb on + strand, within CA264_20665at 4757.105 kb on + strand, within CA264_20665at 4757.105 kb on + strand, within CA264_20665at 4757.126 kb on - strand, within CA264_20665at 4757.126 kb on - strand, within CA264_20665at 4757.133 kb on + strand, within CA264_20665at 4757.172 kb on - strand, within CA264_20665at 4757.196 kb on - strand, within CA264_20665at 4757.303 kb on - strand, within CA264_20665at 4757.316 kb on - strand, within CA264_20665at 4757.410 kb on + strand, within CA264_20665at 4757.432 kb on + strand, within CA264_20665at 4757.433 kb on - strand, within CA264_20665at 4757.439 kb on - strand, within CA264_20665at 4757.470 kb on + strand, within CA264_20665at 4757.507 kb on - strand, within CA264_20665at 4757.547 kb on + strand, within CA264_20665at 4757.548 kb on - strand, within CA264_20665at 4757.548 kb on - strand, within CA264_20665at 4757.602 kb on + strand, within CA264_20665at 4757.614 kb on + strand, within CA264_20665at 4757.615 kb on - strand, within CA264_20665at 4757.615 kb on - strand, within CA264_20665at 4757.638 kb on + strand, within CA264_20665at 4757.643 kb on - strand, within CA264_20665at 4757.697 kb on + strandat 4757.697 kb on + strandat 4757.698 kb on - strandat 4757.866 kb on + strandat 4757.890 kb on + strandat 4757.898 kb on + strandat 4758.028 kb on - strand, within CA264_20670at 4758.028 kb on - strand, within CA264_20670at 4758.031 kb on + strand, within CA264_20670at 4758.107 kb on + strand, within CA264_20670at 4758.108 kb on - strand, within CA264_20670at 4758.153 kb on - strand, within CA264_20670at 4758.243 kb on + strand, within CA264_20670at 4758.243 kb on + strand, within CA264_20670at 4758.244 kb on - strand, within CA264_20670at 4758.244 kb on - strand, within CA264_20670at 4758.282 kb on - strand, within CA264_20670at 4758.375 kb on - strand, within CA264_20670at 4758.381 kb on + strand, within CA264_20670at 4758.427 kb on + strand, within CA264_20670at 4758.428 kb on - strand, within CA264_20670at 4758.431 kb on + strand, within CA264_20670at 4758.431 kb on + strand, within CA264_20670at 4758.431 kb on + strand, within CA264_20670at 4758.481 kb on - strand, within CA264_20670at 4758.574 kb on + strand, within CA264_20670at 4758.665 kb on - strand, within CA264_20670at 4758.665 kb on - strand, within CA264_20670at 4758.681 kb on + strand, within CA264_20670at 4758.681 kb on + strand, within CA264_20670at 4758.684 kb on + strand, within CA264_20670at 4758.685 kb on - strand, within CA264_20670at 4758.714 kb on - strand, within CA264_20670at 4758.714 kb on - strand, within CA264_20670at 4758.715 kb on + strand, within CA264_20670at 4758.770 kb on + strand, within CA264_20670at 4758.771 kb on - strand, within CA264_20670at 4758.771 kb on - strand, within CA264_20670at 4758.808 kb on + strand, within CA264_20670at 4758.809 kb on - strand, within CA264_20670at 4758.810 kb on + strand, within CA264_20670at 4758.810 kb on + strand, within CA264_20670at 4758.810 kb on + strand, within CA264_20670at 4758.815 kb on + strand, within CA264_20670at 4758.816 kb on - strand, within CA264_20670

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml
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4,755,742 - CA264_20660 0.57 -1.0
4,755,743 + CA264_20660 0.57 -0.4
4,755,743 + CA264_20660 0.57 -0.2
4,755,743 + CA264_20660 0.57 -0.2
4,755,743 + CA264_20660 0.57 +0.3
4,755,744 - CA264_20660 0.57 -0.3
4,755,822 - CA264_20660 0.65 -0.7
4,755,935 - CA264_20660 0.77 +1.4
4,756,036 - CA264_20660 0.87 -1.2
4,756,131 + +0.8
4,756,131 + -0.0
4,756,131 + +0.1
4,756,132 - +0.0
4,756,132 - +1.8
4,756,132 - +0.8
4,756,135 + -0.4
4,756,178 - +0.8
4,756,183 + +0.4
4,756,184 - +2.4
4,756,219 - +0.6
4,756,219 - -0.1
4,756,255 + -0.2
4,756,256 - +0.8
4,756,308 - -0.3
4,756,316 - -1.4
4,756,328 - +0.3
4,756,335 + +0.0
4,756,336 - -0.8
4,756,336 - +0.2
4,756,350 + +0.2
4,756,429 - +0.3
4,756,505 - -0.2
4,756,571 - -1.9
4,756,608 - CA264_20665 0.12 +0.2
4,756,734 + CA264_20665 0.22 +0.5
4,756,735 - CA264_20665 0.22 -0.6
4,756,748 + CA264_20665 0.23 +0.2
4,756,835 + CA264_20665 0.29 -0.5
4,757,105 + CA264_20665 0.48 +0.1
4,757,105 + CA264_20665 0.48 -1.0
4,757,126 - CA264_20665 0.50 +0.0
4,757,126 - CA264_20665 0.50 -0.8
4,757,133 + CA264_20665 0.50 +0.5
4,757,172 - CA264_20665 0.53 -0.3
4,757,196 - CA264_20665 0.55 +0.8
4,757,303 - CA264_20665 0.62 -0.2
4,757,316 - CA264_20665 0.63 -0.5
4,757,410 + CA264_20665 0.70 +0.6
4,757,432 + CA264_20665 0.72 +0.6
4,757,433 - CA264_20665 0.72 -0.7
4,757,439 - CA264_20665 0.72 +0.0
4,757,470 + CA264_20665 0.74 +0.2
4,757,507 - CA264_20665 0.77 -1.5
4,757,547 + CA264_20665 0.80 -0.1
4,757,548 - CA264_20665 0.80 -0.0
4,757,548 - CA264_20665 0.80 -1.1
4,757,602 + CA264_20665 0.84 +1.6
4,757,614 + CA264_20665 0.85 -0.0
4,757,615 - CA264_20665 0.85 +0.5
4,757,615 - CA264_20665 0.85 +2.9
4,757,638 + CA264_20665 0.86 +0.5
4,757,643 - CA264_20665 0.87 -0.2
4,757,697 + +0.1
4,757,697 + +1.6
4,757,698 - +0.6
4,757,866 + +0.3
4,757,890 + +0.6
4,757,898 + -0.8
4,758,028 - CA264_20670 0.12 -0.0
4,758,028 - CA264_20670 0.12 -0.0
4,758,031 + CA264_20670 0.12 -0.7
4,758,107 + CA264_20670 0.19 -0.5
4,758,108 - CA264_20670 0.19 -0.4
4,758,153 - CA264_20670 0.23 -0.1
4,758,243 + CA264_20670 0.31 -0.8
4,758,243 + CA264_20670 0.31 -0.1
4,758,244 - CA264_20670 0.31 +0.4
4,758,244 - CA264_20670 0.31 -0.3
4,758,282 - CA264_20670 0.34 +0.9
4,758,375 - CA264_20670 0.43 -0.0
4,758,381 + CA264_20670 0.43 +1.1
4,758,427 + CA264_20670 0.47 +0.8
4,758,428 - CA264_20670 0.47 -1.0
4,758,431 + CA264_20670 0.48 +0.5
4,758,431 + CA264_20670 0.48 +0.3
4,758,431 + CA264_20670 0.48 -0.1
4,758,481 - CA264_20670 0.52 -0.1
4,758,574 + CA264_20670 0.60 +0.7
4,758,665 - CA264_20670 0.68 +0.8
4,758,665 - CA264_20670 0.68 +0.7
4,758,681 + CA264_20670 0.70 -0.1
4,758,681 + CA264_20670 0.70 +1.0
4,758,684 + CA264_20670 0.70 -0.0
4,758,685 - CA264_20670 0.70 +0.1
4,758,714 - CA264_20670 0.73 +0.2
4,758,714 - CA264_20670 0.73 -0.0
4,758,715 + CA264_20670 0.73 -0.8
4,758,770 + CA264_20670 0.78 -0.3
4,758,771 - CA264_20670 0.78 +0.8
4,758,771 - CA264_20670 0.78 +1.1
4,758,808 + CA264_20670 0.81 +0.2
4,758,809 - CA264_20670 0.81 +0.0
4,758,810 + CA264_20670 0.81 -2.2
4,758,810 + CA264_20670 0.81 +1.4
4,758,810 + CA264_20670 0.81 -1.1
4,758,815 + CA264_20670 0.82 +0.8
4,758,816 - CA264_20670 0.82 -0.3

Or see this region's nucleotide sequence