Experiment: m.b. Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20110 and CA264_20115 are separated by 179 nucleotides CA264_20115 and CA264_20120 are separated by 75 nucleotides CA264_20120 and CA264_20125 are separated by 447 nucleotides
CA264_20110: CA264_20110 - DNA helicase RecQ, at 4,636,044 to 4,638,224
_20110
CA264_20115: CA264_20115 - phosphoribosylamine--glycine ligase, at 4,638,404 to 4,639,693
_20115
CA264_20120: CA264_20120 - hypothetical protein, at 4,639,769 to 4,640,182
_20120
CA264_20125: CA264_20125 - hypothetical protein, at 4,640,630 to 4,640,971
_20125
Position (kb)
4638
4639
4640 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4637.532 kb on - strand, within CA264_20110 at 4637.571 kb on - strand, within CA264_20110 at 4637.817 kb on - strand, within CA264_20110 at 4637.844 kb on + strand, within CA264_20110 at 4638.054 kb on + strand at 4638.055 kb on - strand at 4638.239 kb on - strand at 4638.296 kb on + strand at 4638.309 kb on - strand at 4638.309 kb on - strand at 4638.337 kb on + strand at 4638.337 kb on + strand at 4638.374 kb on + strand at 4638.379 kb on - strand at 4638.403 kb on + strand at 4638.412 kb on - strand at 4638.412 kb on - strand at 4638.420 kb on + strand at 4638.530 kb on - strand at 4638.530 kb on - strand at 4638.540 kb on + strand, within CA264_20115 at 4638.544 kb on + strand, within CA264_20115 at 4638.545 kb on - strand, within CA264_20115 at 4638.592 kb on + strand, within CA264_20115 at 4638.593 kb on - strand, within CA264_20115 at 4638.593 kb on - strand, within CA264_20115 at 4638.673 kb on + strand, within CA264_20115 at 4638.673 kb on + strand, within CA264_20115 at 4638.673 kb on + strand, within CA264_20115 at 4638.785 kb on - strand, within CA264_20115 at 4638.833 kb on + strand, within CA264_20115 at 4638.897 kb on - strand, within CA264_20115 at 4638.980 kb on + strand, within CA264_20115 at 4638.980 kb on + strand, within CA264_20115 at 4639.011 kb on + strand, within CA264_20115 at 4639.012 kb on - strand, within CA264_20115 at 4639.032 kb on - strand, within CA264_20115 at 4639.059 kb on - strand, within CA264_20115 at 4639.059 kb on - strand, within CA264_20115 at 4639.060 kb on + strand, within CA264_20115 at 4639.061 kb on - strand, within CA264_20115 at 4639.081 kb on + strand, within CA264_20115 at 4639.081 kb on + strand, within CA264_20115 at 4639.389 kb on + strand, within CA264_20115 at 4639.389 kb on + strand, within CA264_20115 at 4639.416 kb on + strand, within CA264_20115 at 4639.417 kb on - strand, within CA264_20115 at 4639.525 kb on - strand, within CA264_20115 at 4639.631 kb on - strand at 4639.692 kb on - strand at 4639.709 kb on - strand at 4639.770 kb on + strand at 4639.770 kb on + strand at 4639.776 kb on + strand at 4639.962 kb on - strand, within CA264_20120 at 4640.070 kb on - strand, within CA264_20120 at 4640.088 kb on - strand, within CA264_20120 at 4640.141 kb on - strand at 4640.167 kb on + strand at 4640.170 kb on - strand at 4640.178 kb on + strand at 4640.300 kb on + strand at 4640.300 kb on + strand at 4640.349 kb on - strand at 4640.380 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.385 kb on + strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.386 kb on - strand at 4640.388 kb on + strand at 4640.388 kb on + strand at 4640.503 kb on + strand at 4640.504 kb on - strand at 4640.542 kb on + strand at 4640.543 kb on - strand at 4640.577 kb on + strand at 4640.578 kb on - strand at 4640.578 kb on - strand at 4640.578 kb on - strand at 4640.601 kb on - strand at 4640.616 kb on - strand at 4640.629 kb on + strand at 4640.649 kb on - strand at 4640.653 kb on + strand at 4640.653 kb on + strand at 4640.654 kb on - strand at 4640.682 kb on + strand, within CA264_20125 at 4640.693 kb on - strand, within CA264_20125
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml remove 4,637,532 - CA264_20110 0.68 -0.2 4,637,571 - CA264_20110 0.70 -3.5 4,637,817 - CA264_20110 0.81 -1.5 4,637,844 + CA264_20110 0.83 -1.6 4,638,054 + -2.8 4,638,055 - -1.2 4,638,239 - -1.2 4,638,296 + +0.2 4,638,309 - -0.0 4,638,309 - +1.4 4,638,337 + +0.8 4,638,337 + -1.0 4,638,374 + -0.5 4,638,379 - +0.2 4,638,403 + -1.2 4,638,412 - +0.2 4,638,412 - +0.1 4,638,420 + -0.0 4,638,530 - +0.8 4,638,530 - +0.0 4,638,540 + CA264_20115 0.11 -0.6 4,638,544 + CA264_20115 0.11 -0.1 4,638,545 - CA264_20115 0.11 +0.2 4,638,592 + CA264_20115 0.15 +0.2 4,638,593 - CA264_20115 0.15 +0.1 4,638,593 - CA264_20115 0.15 +0.2 4,638,673 + CA264_20115 0.21 -1.3 4,638,673 + CA264_20115 0.21 -0.2 4,638,673 + CA264_20115 0.21 +0.5 4,638,785 - CA264_20115 0.30 +0.1 4,638,833 + CA264_20115 0.33 +0.8 4,638,897 - CA264_20115 0.38 -0.1 4,638,980 + CA264_20115 0.45 -1.2 4,638,980 + CA264_20115 0.45 +0.7 4,639,011 + CA264_20115 0.47 +0.8 4,639,012 - CA264_20115 0.47 +0.4 4,639,032 - CA264_20115 0.49 +0.6 4,639,059 - CA264_20115 0.51 -1.2 4,639,059 - CA264_20115 0.51 +0.6 4,639,060 + CA264_20115 0.51 -0.5 4,639,061 - CA264_20115 0.51 -0.2 4,639,081 + CA264_20115 0.52 +0.5 4,639,081 + CA264_20115 0.52 +0.4 4,639,389 + CA264_20115 0.76 +0.8 4,639,389 + CA264_20115 0.76 +0.2 4,639,416 + CA264_20115 0.78 +1.2 4,639,417 - CA264_20115 0.79 -1.9 4,639,525 - CA264_20115 0.87 -1.0 4,639,631 - -0.2 4,639,692 - -0.1 4,639,709 - +0.5 4,639,770 + -0.4 4,639,770 + +0.8 4,639,776 + -0.3 4,639,962 - CA264_20120 0.47 -1.8 4,640,070 - CA264_20120 0.73 +1.0 4,640,088 - CA264_20120 0.77 +0.0 4,640,141 - +0.0 4,640,167 + +0.1 4,640,170 - -1.1 4,640,178 + -0.4 4,640,300 + -0.4 4,640,300 + +0.3 4,640,349 - -0.0 4,640,380 + +0.2 4,640,385 + -1.1 4,640,385 + -1.6 4,640,385 + -0.1 4,640,385 + -0.0 4,640,385 + -1.7 4,640,385 + +0.8 4,640,385 + -0.4 4,640,385 + -1.3 4,640,385 + -0.8 4,640,385 + +0.0 4,640,385 + -0.6 4,640,385 + -0.8 4,640,385 + -0.6 4,640,385 + -1.5 4,640,385 + -0.8 4,640,385 + -0.8 4,640,385 + -1.2 4,640,385 + +0.3 4,640,385 + -1.3 4,640,385 + +0.4 4,640,385 + -1.7 4,640,385 + +0.0 4,640,386 - +0.8 4,640,386 - -0.3 4,640,386 - +0.6 4,640,386 - -1.8 4,640,386 - +0.8 4,640,386 - -0.5 4,640,386 - +1.1 4,640,386 - -0.5 4,640,386 - +1.2 4,640,386 - -0.1 4,640,386 - -0.3 4,640,386 - +0.2 4,640,386 - +2.8 4,640,386 - +0.2 4,640,386 - -0.2 4,640,386 - -0.1 4,640,386 - +0.8 4,640,386 - -2.1 4,640,388 + -0.2 4,640,388 + +0.2 4,640,503 + -1.2 4,640,504 - -0.6 4,640,542 + -0.0 4,640,543 - +3.4 4,640,577 + -0.3 4,640,578 - +1.8 4,640,578 - +0.5 4,640,578 - +0.1 4,640,601 - -0.1 4,640,616 - +0.1 4,640,629 + -0.1 4,640,649 - +1.8 4,640,653 + +0.5 4,640,653 + +1.0 4,640,654 - +0.6 4,640,682 + CA264_20125 0.15 -0.8 4,640,693 - CA264_20125 0.18 +0.2
Or see this region's nucleotide sequence