Experiment: m.b. Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19545 and CA264_19550 are separated by 106 nucleotides CA264_19550 and CA264_19555 are separated by 70 nucleotides CA264_19555 and CA264_19560 are separated by 412 nucleotides
CA264_19545: CA264_19545 - oxidoreductase, at 4,515,230 to 4,516,123
_19545
CA264_19550: CA264_19550 - diaminopimelate epimerase, at 4,516,230 to 4,517,015
_19550
CA264_19555: CA264_19555 - GNAT family N-acetyltransferase, at 4,517,086 to 4,517,601
_19555
CA264_19560: CA264_19560 - preprotein translocase subunit SecA, at 4,518,014 to 4,521,385
_19560
Position (kb)
4516
4517
4518 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4515.231 kb on + strand at 4515.231 kb on + strand at 4515.248 kb on - strand at 4515.301 kb on - strand at 4515.399 kb on - strand, within CA264_19545 at 4515.505 kb on - strand, within CA264_19545 at 4515.534 kb on + strand, within CA264_19545 at 4515.551 kb on + strand, within CA264_19545 at 4515.568 kb on - strand, within CA264_19545 at 4515.671 kb on + strand, within CA264_19545 at 4515.715 kb on + strand, within CA264_19545 at 4515.774 kb on + strand, within CA264_19545 at 4515.778 kb on + strand, within CA264_19545 at 4515.779 kb on - strand, within CA264_19545 at 4515.824 kb on - strand, within CA264_19545 at 4515.868 kb on - strand, within CA264_19545 at 4515.868 kb on - strand, within CA264_19545 at 4515.868 kb on - strand, within CA264_19545 at 4515.868 kb on - strand, within CA264_19545 at 4515.868 kb on - strand, within CA264_19545 at 4515.873 kb on + strand, within CA264_19545 at 4516.032 kb on + strand, within CA264_19545 at 4516.033 kb on - strand, within CA264_19545 at 4516.035 kb on + strand at 4516.036 kb on - strand at 4516.119 kb on + strand at 4516.119 kb on + strand at 4516.120 kb on - strand at 4516.123 kb on + strand at 4516.124 kb on - strand at 4516.124 kb on - strand at 4516.148 kb on - strand at 4516.148 kb on - strand at 4516.191 kb on - strand at 4516.214 kb on + strand at 4516.215 kb on - strand at 4516.227 kb on + strand at 4516.228 kb on - strand at 4516.228 kb on - strand at 4516.228 kb on - strand at 4516.228 kb on - strand at 4517.014 kb on - strand at 4517.107 kb on - strand at 4517.110 kb on + strand at 4517.111 kb on - strand at 4517.111 kb on - strand at 4517.250 kb on + strand, within CA264_19555 at 4517.251 kb on - strand, within CA264_19555 at 4517.254 kb on + strand, within CA264_19555 at 4517.255 kb on - strand, within CA264_19555 at 4517.255 kb on - strand, within CA264_19555 at 4517.305 kb on - strand, within CA264_19555 at 4517.305 kb on - strand, within CA264_19555 at 4517.367 kb on - strand, within CA264_19555 at 4517.439 kb on + strand, within CA264_19555 at 4517.439 kb on + strand, within CA264_19555 at 4517.439 kb on + strand, within CA264_19555 at 4517.439 kb on + strand, within CA264_19555 at 4517.440 kb on - strand, within CA264_19555 at 4517.440 kb on - strand, within CA264_19555 at 4517.460 kb on - strand, within CA264_19555 at 4517.461 kb on + strand, within CA264_19555 at 4517.461 kb on + strand, within CA264_19555 at 4517.462 kb on - strand, within CA264_19555 at 4517.580 kb on - strand at 4517.580 kb on - strand at 4517.612 kb on + strand at 4517.613 kb on - strand at 4517.677 kb on - strand at 4517.677 kb on - strand at 4517.691 kb on - strand at 4517.699 kb on - strand at 4517.699 kb on - strand at 4517.730 kb on - strand at 4517.730 kb on - strand at 4517.774 kb on + strand at 4517.817 kb on - strand at 4517.817 kb on - strand at 4517.820 kb on + strand at 4517.820 kb on + strand at 4517.821 kb on - strand at 4517.824 kb on - strand at 4517.831 kb on - strand at 4517.835 kb on + strand at 4517.854 kb on - strand at 4517.857 kb on + strand at 4517.864 kb on + strand at 4517.865 kb on - strand at 4517.866 kb on + strand at 4517.867 kb on - strand at 4517.869 kb on + strand at 4517.869 kb on + strand at 4517.869 kb on + strand at 4517.870 kb on - strand at 4517.871 kb on + strand at 4517.883 kb on - strand at 4517.928 kb on - strand at 4517.930 kb on + strand at 4517.940 kb on + strand at 4517.944 kb on + strand at 4517.945 kb on - strand at 4517.947 kb on - strand at 4517.996 kb on + strand at 4518.007 kb on + strand at 4518.007 kb on + strand at 4518.010 kb on - strand at 4518.010 kb on - strand at 4518.010 kb on - strand at 4518.010 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml remove 4,515,231 + +0.7 4,515,231 + -0.2 4,515,248 - +0.3 4,515,301 - -0.4 4,515,399 - CA264_19545 0.19 +1.0 4,515,505 - CA264_19545 0.31 +1.8 4,515,534 + CA264_19545 0.34 +1.9 4,515,551 + CA264_19545 0.36 +1.4 4,515,568 - CA264_19545 0.38 -0.3 4,515,671 + CA264_19545 0.49 -0.1 4,515,715 + CA264_19545 0.54 +0.4 4,515,774 + CA264_19545 0.61 +0.9 4,515,778 + CA264_19545 0.61 +0.2 4,515,779 - CA264_19545 0.61 +1.3 4,515,824 - CA264_19545 0.66 +0.8 4,515,868 - CA264_19545 0.71 +1.4 4,515,868 - CA264_19545 0.71 +0.7 4,515,868 - CA264_19545 0.71 +3.2 4,515,868 - CA264_19545 0.71 +1.6 4,515,868 - CA264_19545 0.71 +1.4 4,515,873 + CA264_19545 0.72 +1.4 4,516,032 + CA264_19545 0.90 +0.9 4,516,033 - CA264_19545 0.90 +1.2 4,516,035 + +1.2 4,516,036 - +0.8 4,516,119 + +1.2 4,516,119 + +1.0 4,516,120 - +0.8 4,516,123 + -0.2 4,516,124 - +0.3 4,516,124 - -0.1 4,516,148 - +0.9 4,516,148 - -0.1 4,516,191 - -0.3 4,516,214 + -0.5 4,516,215 - +1.4 4,516,227 + -0.5 4,516,228 - +0.9 4,516,228 - +0.4 4,516,228 - -0.6 4,516,228 - +0.9 4,517,014 - +0.3 4,517,107 - -0.9 4,517,110 + +0.3 4,517,111 - -0.0 4,517,111 - -0.2 4,517,250 + CA264_19555 0.32 +1.9 4,517,251 - CA264_19555 0.32 +0.5 4,517,254 + CA264_19555 0.33 -0.1 4,517,255 - CA264_19555 0.33 -0.6 4,517,255 - CA264_19555 0.33 -0.8 4,517,305 - CA264_19555 0.42 -0.6 4,517,305 - CA264_19555 0.42 -0.2 4,517,367 - CA264_19555 0.54 -1.1 4,517,439 + CA264_19555 0.68 -0.7 4,517,439 + CA264_19555 0.68 -0.0 4,517,439 + CA264_19555 0.68 +0.7 4,517,439 + CA264_19555 0.68 -0.5 4,517,440 - CA264_19555 0.69 -0.5 4,517,440 - CA264_19555 0.69 -0.4 4,517,460 - CA264_19555 0.72 -0.9 4,517,461 + CA264_19555 0.73 +0.6 4,517,461 + CA264_19555 0.73 -0.3 4,517,462 - CA264_19555 0.73 -0.3 4,517,580 - -0.8 4,517,580 - -0.1 4,517,612 + +0.9 4,517,613 - -1.2 4,517,677 - +1.1 4,517,677 - +0.5 4,517,691 - -0.1 4,517,699 - +0.5 4,517,699 - -0.1 4,517,730 - -0.4 4,517,730 - -0.1 4,517,774 + +0.1 4,517,817 - -0.7 4,517,817 - -0.5 4,517,820 + -0.2 4,517,820 + -0.7 4,517,821 - -0.1 4,517,824 - +0.4 4,517,831 - +0.2 4,517,835 + -0.1 4,517,854 - -1.5 4,517,857 + -0.8 4,517,864 + -0.1 4,517,865 - +0.1 4,517,866 + +0.3 4,517,867 - +0.3 4,517,869 + +0.7 4,517,869 + -1.7 4,517,869 + -1.3 4,517,870 - -0.4 4,517,871 + +0.3 4,517,883 - -0.5 4,517,928 - -0.1 4,517,930 + -0.0 4,517,940 + +0.6 4,517,944 + +0.1 4,517,945 - +0.5 4,517,947 - -0.3 4,517,996 + +0.4 4,518,007 + -0.2 4,518,007 + +0.3 4,518,010 - -0.5 4,518,010 - -1.7 4,518,010 - -0.6 4,518,010 - +0.0
Or see this region's nucleotide sequence