Experiment: m.b. Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19070 and CA264_19075 are separated by 4 nucleotides CA264_19075 and CA264_19080 overlap by 65 nucleotides CA264_19080 and CA264_19085 are separated by 508 nucleotides
CA264_19070: CA264_19070 - DUF368 domain-containing protein, at 4,432,027 to 4,432,926
_19070
CA264_19075: CA264_19075 - shikimate dehydrogenase, at 4,432,931 to 4,433,671
_19075
CA264_19080: CA264_19080 - hypothetical protein, at 4,433,607 to 4,434,173
_19080
CA264_19085: CA264_19085 - RNA polymerase subunit sigma-24, at 4,434,682 to 4,435,260
_19085
Position (kb)
4433
4434
4435 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4432.923 kb on - strand at 4432.930 kb on + strand at 4432.930 kb on + strand at 4432.931 kb on - strand at 4433.700 kb on + strand, within CA264_19080 at 4433.729 kb on + strand, within CA264_19080 at 4433.729 kb on + strand, within CA264_19080 at 4433.730 kb on - strand, within CA264_19080 at 4433.737 kb on + strand, within CA264_19080 at 4433.752 kb on - strand, within CA264_19080 at 4433.752 kb on - strand, within CA264_19080 at 4433.752 kb on - strand, within CA264_19080 at 4433.788 kb on + strand, within CA264_19080 at 4433.788 kb on + strand, within CA264_19080 at 4433.789 kb on - strand, within CA264_19080 at 4433.795 kb on + strand, within CA264_19080 at 4433.832 kb on + strand, within CA264_19080 at 4433.833 kb on - strand, within CA264_19080 at 4433.841 kb on + strand, within CA264_19080 at 4434.099 kb on + strand, within CA264_19080 at 4434.099 kb on + strand, within CA264_19080 at 4434.101 kb on + strand, within CA264_19080 at 4434.101 kb on + strand, within CA264_19080 at 4434.163 kb on + strand at 4434.163 kb on + strand at 4434.164 kb on - strand at 4434.169 kb on - strand at 4434.172 kb on - strand at 4434.172 kb on - strand at 4434.172 kb on - strand at 4434.175 kb on + strand at 4434.177 kb on + strand at 4434.177 kb on + strand at 4434.178 kb on - strand at 4434.178 kb on - strand at 4434.178 kb on - strand at 4434.200 kb on - strand at 4434.200 kb on - strand at 4434.210 kb on - strand at 4434.215 kb on + strand at 4434.216 kb on - strand at 4434.218 kb on + strand at 4434.218 kb on + strand at 4434.219 kb on - strand at 4434.290 kb on + strand at 4434.291 kb on - strand at 4434.293 kb on + strand at 4434.407 kb on - strand at 4434.438 kb on - strand at 4434.493 kb on + strand at 4434.605 kb on - strand at 4434.605 kb on - strand at 4434.615 kb on + strand at 4434.651 kb on + strand at 4434.726 kb on - strand at 4434.769 kb on + strand, within CA264_19085 at 4434.769 kb on + strand, within CA264_19085 at 4434.840 kb on + strand, within CA264_19085 at 4434.944 kb on + strand, within CA264_19085 at 4435.009 kb on - strand, within CA264_19085 at 4435.056 kb on - strand, within CA264_19085 at 4435.059 kb on + strand, within CA264_19085 at 4435.106 kb on - strand, within CA264_19085
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml remove 4,432,923 - -2.1 4,432,930 + +0.5 4,432,930 + -0.6 4,432,931 - +0.6 4,433,700 + CA264_19080 0.16 -0.1 4,433,729 + CA264_19080 0.22 -1.2 4,433,729 + CA264_19080 0.22 +0.4 4,433,730 - CA264_19080 0.22 +0.4 4,433,737 + CA264_19080 0.23 +0.8 4,433,752 - CA264_19080 0.26 +0.1 4,433,752 - CA264_19080 0.26 -0.6 4,433,752 - CA264_19080 0.26 -0.1 4,433,788 + CA264_19080 0.32 +0.2 4,433,788 + CA264_19080 0.32 -0.4 4,433,789 - CA264_19080 0.32 +0.3 4,433,795 + CA264_19080 0.33 -1.3 4,433,832 + CA264_19080 0.40 +1.1 4,433,833 - CA264_19080 0.40 +0.7 4,433,841 + CA264_19080 0.41 -1.4 4,434,099 + CA264_19080 0.87 +0.5 4,434,099 + CA264_19080 0.87 -0.5 4,434,101 + CA264_19080 0.87 +0.6 4,434,101 + CA264_19080 0.87 +0.2 4,434,163 + -0.5 4,434,163 + +0.3 4,434,164 - -1.4 4,434,169 - +1.0 4,434,172 - +0.1 4,434,172 - +0.5 4,434,172 - +0.4 4,434,175 + -0.9 4,434,177 + +0.2 4,434,177 + +0.0 4,434,178 - +0.2 4,434,178 - -0.1 4,434,178 - +3.5 4,434,200 - -0.3 4,434,200 - +0.2 4,434,210 - -1.0 4,434,215 + +0.3 4,434,216 - -0.6 4,434,218 + +0.3 4,434,218 + +0.4 4,434,219 - -0.6 4,434,290 + -0.2 4,434,291 - +0.1 4,434,293 + +0.3 4,434,407 - +0.6 4,434,438 - +0.0 4,434,493 + -0.3 4,434,605 - -0.1 4,434,605 - +1.8 4,434,615 + -0.1 4,434,651 + +0.6 4,434,726 - +0.5 4,434,769 + CA264_19085 0.15 +0.5 4,434,769 + CA264_19085 0.15 -0.1 4,434,840 + CA264_19085 0.27 +0.7 4,434,944 + CA264_19085 0.45 +0.1 4,435,009 - CA264_19085 0.56 +0.6 4,435,056 - CA264_19085 0.65 +0.8 4,435,059 + CA264_19085 0.65 +0.5 4,435,106 - CA264_19085 0.73 +0.9
Or see this region's nucleotide sequence