Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17055

Experiment: m.b. Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17050 and CA264_17055 are separated by 439 nucleotidesCA264_17055 and CA264_17060 are separated by 105 nucleotidesCA264_17060 and CA264_17065 are separated by 82 nucleotidesCA264_17065 and CA264_17070 are separated by 81 nucleotides CA264_17050: CA264_17050 - hypothetical protein, at 3,967,155 to 3,973,004 _17050 CA264_17055: CA264_17055 - serine/threonine protein phosphatase, at 3,973,444 to 3,974,139 _17055 CA264_17060: CA264_17060 - hypothetical protein, at 3,974,245 to 3,974,484 _17060 CA264_17065: CA264_17065 - hypothetical protein, at 3,974,567 to 3,974,869 _17065 CA264_17070: CA264_17070 - NAD(P)-dependent oxidoreductase, at 3,974,951 to 3,975,817 _17070 Position (kb) 3973 3974 3975Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3972.507 kb on + strandat 3972.507 kb on + strandat 3972.508 kb on - strandat 3972.512 kb on + strandat 3972.512 kb on + strandat 3972.623 kb on + strandat 3972.624 kb on - strandat 3972.624 kb on - strandat 3972.631 kb on + strandat 3972.676 kb on + strandat 3972.677 kb on - strandat 3972.747 kb on + strandat 3972.748 kb on - strandat 3972.773 kb on + strandat 3972.774 kb on - strandat 3972.774 kb on - strandat 3972.840 kb on - strandat 3972.840 kb on - strandat 3972.924 kb on + strandat 3973.046 kb on + strandat 3973.050 kb on + strandat 3973.053 kb on - strandat 3973.085 kb on - strandat 3973.105 kb on - strandat 3973.154 kb on - strandat 3973.171 kb on - strandat 3973.173 kb on + strandat 3973.209 kb on + strandat 3973.210 kb on - strandat 3973.210 kb on - strandat 3973.223 kb on + strandat 3973.223 kb on + strandat 3973.253 kb on + strandat 3973.333 kb on + strandat 3973.333 kb on + strandat 3973.334 kb on - strandat 3973.338 kb on + strandat 3973.338 kb on + strandat 3973.372 kb on - strandat 3973.445 kb on + strandat 3973.676 kb on - strand, within CA264_17055at 3973.682 kb on + strand, within CA264_17055at 3973.695 kb on + strand, within CA264_17055at 3973.695 kb on + strand, within CA264_17055at 3973.695 kb on + strand, within CA264_17055at 3973.695 kb on + strand, within CA264_17055at 3973.696 kb on - strand, within CA264_17055at 3973.723 kb on - strand, within CA264_17055at 3973.760 kb on + strand, within CA264_17055at 3973.781 kb on + strand, within CA264_17055at 3973.781 kb on + strand, within CA264_17055at 3973.782 kb on - strand, within CA264_17055at 3973.782 kb on - strand, within CA264_17055at 3973.785 kb on - strand, within CA264_17055at 3973.811 kb on + strand, within CA264_17055at 3973.988 kb on + strand, within CA264_17055at 3974.113 kb on + strandat 3974.113 kb on + strandat 3974.114 kb on - strandat 3974.237 kb on - strandat 3974.246 kb on + strandat 3974.246 kb on + strandat 3974.251 kb on - strandat 3974.252 kb on + strandat 3974.252 kb on + strandat 3974.253 kb on - strandat 3974.287 kb on - strand, within CA264_17060at 3974.340 kb on + strand, within CA264_17060at 3974.341 kb on - strand, within CA264_17060at 3974.472 kb on + strandat 3974.472 kb on + strandat 3974.473 kb on - strandat 3974.473 kb on - strandat 3974.473 kb on - strandat 3974.474 kb on + strandat 3974.474 kb on + strandat 3974.475 kb on - strandat 3974.504 kb on + strandat 3974.530 kb on + strandat 3974.531 kb on - strandat 3974.532 kb on + strandat 3974.532 kb on + strandat 3974.532 kb on + strandat 3974.532 kb on + strandat 3974.532 kb on + strandat 3974.533 kb on - strandat 3974.671 kb on + strand, within CA264_17065at 3974.671 kb on + strand, within CA264_17065at 3974.672 kb on - strand, within CA264_17065at 3974.672 kb on - strand, within CA264_17065at 3974.753 kb on + strand, within CA264_17065at 3974.753 kb on + strand, within CA264_17065at 3974.756 kb on + strand, within CA264_17065at 3974.798 kb on + strand, within CA264_17065at 3974.799 kb on - strand, within CA264_17065at 3974.837 kb on + strand, within CA264_17065at 3974.851 kb on + strandat 3974.857 kb on + strandat 3974.869 kb on + strandat 3974.870 kb on - strandat 3974.922 kb on + strandat 3974.957 kb on - strandat 3974.957 kb on - strandat 3974.957 kb on - strandat 3974.961 kb on - strandat 3974.961 kb on - strandat 3974.999 kb on - strandat 3975.001 kb on + strandat 3975.001 kb on + strandat 3975.001 kb on + strandat 3975.002 kb on - strandat 3975.002 kb on - strandat 3975.003 kb on + strandat 3975.003 kb on + strandat 3975.003 kb on + strandat 3975.004 kb on - strandat 3975.004 kb on - strandat 3975.004 kb on - strandat 3975.029 kb on + strandat 3975.029 kb on + strandat 3975.029 kb on + strandat 3975.029 kb on + strandat 3975.029 kb on + strandat 3975.029 kb on + strandat 3975.029 kb on + strandat 3975.030 kb on - strandat 3975.030 kb on - strandat 3975.030 kb on - strandat 3975.034 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml
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3,972,507 + +0.8
3,972,507 + -0.0
3,972,508 - +0.9
3,972,512 + +0.9
3,972,512 + -0.4
3,972,623 + +0.8
3,972,624 - +0.2
3,972,624 - +0.4
3,972,631 + -0.1
3,972,676 + -0.6
3,972,677 - -0.5
3,972,747 + +0.8
3,972,748 - +0.3
3,972,773 + -0.3
3,972,774 - +1.0
3,972,774 - +0.2
3,972,840 - -0.1
3,972,840 - +0.0
3,972,924 + -1.0
3,973,046 + +0.3
3,973,050 + -0.3
3,973,053 - +0.0
3,973,085 - +0.4
3,973,105 - +0.4
3,973,154 - -0.4
3,973,171 - -0.4
3,973,173 + +0.6
3,973,209 + +0.0
3,973,210 - +0.0
3,973,210 - -1.2
3,973,223 + +0.8
3,973,223 + -0.8
3,973,253 + -0.3
3,973,333 + +0.4
3,973,333 + -2.2
3,973,334 - -0.3
3,973,338 + +0.2
3,973,338 + -0.5
3,973,372 - -0.7
3,973,445 + +0.0
3,973,676 - CA264_17055 0.33 -0.9
3,973,682 + CA264_17055 0.34 +0.6
3,973,695 + CA264_17055 0.36 -1.2
3,973,695 + CA264_17055 0.36 +1.0
3,973,695 + CA264_17055 0.36 +0.1
3,973,695 + CA264_17055 0.36 +0.7
3,973,696 - CA264_17055 0.36 +0.7
3,973,723 - CA264_17055 0.40 -1.2
3,973,760 + CA264_17055 0.45 -0.3
3,973,781 + CA264_17055 0.48 +0.7
3,973,781 + CA264_17055 0.48 -0.9
3,973,782 - CA264_17055 0.49 +0.6
3,973,782 - CA264_17055 0.49 +1.3
3,973,785 - CA264_17055 0.49 +0.9
3,973,811 + CA264_17055 0.53 +0.7
3,973,988 + CA264_17055 0.78 +0.1
3,974,113 + -0.5
3,974,113 + -2.4
3,974,114 - -0.1
3,974,237 - +0.8
3,974,246 + +0.2
3,974,246 + -0.2
3,974,251 - +0.6
3,974,252 + -0.2
3,974,252 + -0.1
3,974,253 - -0.6
3,974,287 - CA264_17060 0.17 +0.4
3,974,340 + CA264_17060 0.40 +0.2
3,974,341 - CA264_17060 0.40 +0.4
3,974,472 + +0.7
3,974,472 + +0.6
3,974,473 - -0.1
3,974,473 - +0.7
3,974,473 - -0.1
3,974,474 + -0.4
3,974,474 + -0.2
3,974,475 - -1.6
3,974,504 + +0.6
3,974,530 + -1.3
3,974,531 - -0.7
3,974,532 + +1.0
3,974,532 + +0.1
3,974,532 + +0.4
3,974,532 + -0.1
3,974,532 + +0.0
3,974,533 - +0.4
3,974,671 + CA264_17065 0.34 -0.1
3,974,671 + CA264_17065 0.34 +1.2
3,974,672 - CA264_17065 0.35 -0.4
3,974,672 - CA264_17065 0.35 -0.1
3,974,753 + CA264_17065 0.61 -0.1
3,974,753 + CA264_17065 0.61 +0.0
3,974,756 + CA264_17065 0.62 -0.8
3,974,798 + CA264_17065 0.76 -0.8
3,974,799 - CA264_17065 0.77 -1.0
3,974,837 + CA264_17065 0.89 +0.8
3,974,851 + -0.3
3,974,857 + +2.2
3,974,869 + -0.2
3,974,870 - +0.9
3,974,922 + +0.6
3,974,957 - -1.2
3,974,957 - -0.4
3,974,957 - +2.6
3,974,961 - +0.4
3,974,961 - -0.6
3,974,999 - -0.3
3,975,001 + -0.4
3,975,001 + +0.9
3,975,001 + -0.4
3,975,002 - -1.0
3,975,002 - -0.2
3,975,003 + +0.9
3,975,003 + -0.6
3,975,003 + -0.1
3,975,004 - +0.3
3,975,004 - -1.3
3,975,004 - -1.0
3,975,029 + +3.2
3,975,029 + +0.3
3,975,029 + +0.7
3,975,029 + +1.4
3,975,029 + -0.6
3,975,029 + -0.9
3,975,029 + +0.0
3,975,030 - -0.3
3,975,030 - -0.4
3,975,030 - -0.3
3,975,034 - -1.0

Or see this region's nucleotide sequence