Experiment: m.b. Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_10165 and CA264_10170 are separated by 30 nucleotides CA264_10170 and CA264_10175 are separated by 143 nucleotides CA264_10175 and CA264_10180 are separated by 148 nucleotides
CA264_10165: CA264_10165 - T9SS C-terminal target domain-containing protein, at 2,361,003 to 2,363,897
_10165
CA264_10170: CA264_10170 - endonuclease, at 2,363,928 to 2,365,268
_10170
CA264_10175: CA264_10175 - hypothetical protein, at 2,365,412 to 2,365,903
_10175
CA264_10180: CA264_10180 - SOS mutagenesis and repair protein UmuC, at 2,366,052 to 2,367,320
_10180
Position (kb)
2363
2364
2365
2366 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2362.988 kb on + strand, within CA264_10165 at 2363.055 kb on - strand, within CA264_10165 at 2363.087 kb on + strand, within CA264_10165 at 2363.116 kb on - strand, within CA264_10165 at 2363.872 kb on + strand at 2363.872 kb on + strand at 2363.924 kb on - strand at 2363.929 kb on + strand at 2363.929 kb on + strand at 2363.998 kb on - strand at 2364.244 kb on + strand, within CA264_10170 at 2364.244 kb on + strand, within CA264_10170 at 2364.263 kb on - strand, within CA264_10170 at 2364.287 kb on - strand, within CA264_10170 at 2364.299 kb on - strand, within CA264_10170 at 2364.299 kb on - strand, within CA264_10170 at 2364.598 kb on + strand, within CA264_10170 at 2364.623 kb on + strand, within CA264_10170 at 2364.636 kb on + strand, within CA264_10170 at 2364.656 kb on + strand, within CA264_10170 at 2364.657 kb on - strand, within CA264_10170 at 2364.712 kb on + strand, within CA264_10170 at 2364.768 kb on - strand, within CA264_10170 at 2364.862 kb on + strand, within CA264_10170 at 2364.937 kb on + strand, within CA264_10170 at 2364.937 kb on + strand, within CA264_10170 at 2365.255 kb on + strand at 2365.256 kb on - strand at 2365.264 kb on - strand at 2365.264 kb on - strand at 2365.270 kb on + strand at 2365.271 kb on - strand at 2365.271 kb on - strand at 2365.271 kb on - strand at 2365.271 kb on - strand at 2365.279 kb on + strand at 2365.351 kb on + strand at 2365.352 kb on - strand at 2365.708 kb on - strand, within CA264_10175 at 2365.796 kb on + strand, within CA264_10175 at 2365.796 kb on + strand, within CA264_10175 at 2365.802 kb on - strand, within CA264_10175 at 2365.818 kb on + strand, within CA264_10175 at 2365.825 kb on + strand, within CA264_10175 at 2365.826 kb on - strand, within CA264_10175 at 2365.826 kb on - strand, within CA264_10175 at 2365.870 kb on + strand at 2365.928 kb on + strand at 2365.968 kb on + strand at 2365.999 kb on - strand at 2366.089 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml remove 2,362,988 + CA264_10165 0.69 +0.9 2,363,055 - CA264_10165 0.71 -0.6 2,363,087 + CA264_10165 0.72 +1.9 2,363,116 - CA264_10165 0.73 -2.8 2,363,872 + -2.1 2,363,872 + +0.2 2,363,924 - -0.7 2,363,929 + +0.1 2,363,929 + +0.1 2,363,998 - +0.9 2,364,244 + CA264_10170 0.24 +0.3 2,364,244 + CA264_10170 0.24 -1.5 2,364,263 - CA264_10170 0.25 +0.3 2,364,287 - CA264_10170 0.27 +1.4 2,364,299 - CA264_10170 0.28 +2.2 2,364,299 - CA264_10170 0.28 +0.5 2,364,598 + CA264_10170 0.50 -0.4 2,364,623 + CA264_10170 0.52 +1.4 2,364,636 + CA264_10170 0.53 -0.0 2,364,656 + CA264_10170 0.54 +1.7 2,364,657 - CA264_10170 0.54 +0.8 2,364,712 + CA264_10170 0.58 -0.2 2,364,768 - CA264_10170 0.63 -0.4 2,364,862 + CA264_10170 0.70 -1.9 2,364,937 + CA264_10170 0.75 +0.7 2,364,937 + CA264_10170 0.75 -0.1 2,365,255 + +1.2 2,365,256 - +0.1 2,365,264 - +0.3 2,365,264 - +0.2 2,365,270 + -0.3 2,365,271 - -0.9 2,365,271 - +1.2 2,365,271 - -0.1 2,365,271 - +0.3 2,365,279 + -0.2 2,365,351 + +1.7 2,365,352 - -0.5 2,365,708 - CA264_10175 0.60 +0.0 2,365,796 + CA264_10175 0.78 +0.3 2,365,796 + CA264_10175 0.78 +0.4 2,365,802 - CA264_10175 0.79 +0.1 2,365,818 + CA264_10175 0.83 +1.2 2,365,825 + CA264_10175 0.84 +0.7 2,365,826 - CA264_10175 0.84 -0.3 2,365,826 - CA264_10175 0.84 +0.2 2,365,870 + +0.6 2,365,928 + -1.3 2,365,968 + -0.7 2,365,999 - +0.1 2,366,089 + +0.7
Or see this region's nucleotide sequence