Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09585

Experiment: m.b. Chloramphenicol 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_09575 and CA264_09580 are separated by 420 nucleotidesCA264_09580 and CA264_09585 are separated by 86 nucleotidesCA264_09585 and CA264_09590 are separated by 81 nucleotidesCA264_09590 and CA264_09595 are separated by 89 nucleotides CA264_09575: CA264_09575 - hypothetical protein, at 2,236,741 to 2,237,169 _09575 CA264_09580: CA264_09580 - hypothetical protein, at 2,237,590 to 2,237,919 _09580 CA264_09585: CA264_09585 - hypothetical protein, at 2,238,006 to 2,238,455 _09585 CA264_09590: CA264_09590 - hypothetical protein, at 2,238,537 to 2,239,124 _09590 CA264_09595: CA264_09595 - hypothetical protein, at 2,239,214 to 2,239,783 _09595 Position (kb) 2238 2239Strain fitness (log2 ratio) -2 -1 0 1 2at 2237.013 kb on + strand, within CA264_09575at 2237.033 kb on - strand, within CA264_09575at 2237.106 kb on - strand, within CA264_09575at 2237.106 kb on - strand, within CA264_09575at 2237.106 kb on - strand, within CA264_09575at 2237.112 kb on + strand, within CA264_09575at 2237.113 kb on - strand, within CA264_09575at 2237.113 kb on - strand, within CA264_09575at 2237.115 kb on - strand, within CA264_09575at 2237.221 kb on - strandat 2237.370 kb on + strandat 2237.379 kb on - strandat 2237.421 kb on - strandat 2237.451 kb on + strandat 2237.514 kb on - strandat 2237.523 kb on - strandat 2237.587 kb on - strandat 2237.671 kb on - strand, within CA264_09580at 2237.676 kb on + strand, within CA264_09580at 2237.677 kb on - strand, within CA264_09580at 2237.677 kb on - strand, within CA264_09580at 2237.677 kb on - strand, within CA264_09580at 2237.678 kb on + strand, within CA264_09580at 2237.678 kb on + strand, within CA264_09580at 2237.678 kb on + strand, within CA264_09580at 2237.679 kb on - strand, within CA264_09580at 2237.679 kb on - strand, within CA264_09580at 2237.689 kb on + strand, within CA264_09580at 2237.711 kb on - strand, within CA264_09580at 2237.731 kb on - strand, within CA264_09580at 2237.770 kb on + strand, within CA264_09580at 2237.790 kb on + strand, within CA264_09580at 2237.790 kb on + strand, within CA264_09580at 2237.790 kb on + strand, within CA264_09580at 2237.791 kb on - strand, within CA264_09580at 2237.795 kb on + strand, within CA264_09580at 2237.796 kb on - strand, within CA264_09580at 2237.797 kb on + strand, within CA264_09580at 2237.797 kb on + strand, within CA264_09580at 2237.797 kb on + strand, within CA264_09580at 2237.797 kb on + strand, within CA264_09580at 2237.798 kb on - strand, within CA264_09580at 2237.812 kb on - strand, within CA264_09580at 2237.817 kb on + strand, within CA264_09580at 2237.818 kb on - strand, within CA264_09580at 2237.831 kb on - strand, within CA264_09580at 2237.940 kb on - strandat 2237.944 kb on + strandat 2237.944 kb on + strandat 2237.945 kb on - strandat 2237.991 kb on + strandat 2238.012 kb on + strandat 2238.060 kb on + strand, within CA264_09585at 2238.120 kb on + strand, within CA264_09585at 2238.120 kb on + strand, within CA264_09585at 2238.120 kb on + strand, within CA264_09585at 2238.121 kb on - strand, within CA264_09585at 2238.167 kb on + strand, within CA264_09585at 2238.180 kb on - strand, within CA264_09585at 2238.186 kb on + strand, within CA264_09585at 2238.186 kb on + strand, within CA264_09585at 2238.187 kb on - strand, within CA264_09585at 2238.187 kb on - strand, within CA264_09585at 2238.211 kb on - strand, within CA264_09585at 2238.232 kb on - strand, within CA264_09585at 2238.232 kb on - strand, within CA264_09585at 2238.245 kb on + strand, within CA264_09585at 2238.293 kb on + strand, within CA264_09585at 2238.315 kb on + strand, within CA264_09585at 2238.322 kb on + strand, within CA264_09585at 2238.323 kb on - strand, within CA264_09585at 2238.369 kb on - strand, within CA264_09585at 2238.370 kb on + strand, within CA264_09585at 2238.370 kb on + strand, within CA264_09585at 2238.373 kb on + strand, within CA264_09585at 2238.457 kb on - strandat 2238.464 kb on + strandat 2238.467 kb on + strandat 2238.531 kb on + strandat 2238.531 kb on + strandat 2238.535 kb on - strandat 2238.569 kb on + strandat 2238.594 kb on + strandat 2238.614 kb on + strand, within CA264_09590at 2238.614 kb on + strand, within CA264_09590at 2238.615 kb on - strand, within CA264_09590at 2238.636 kb on - strand, within CA264_09590at 2238.659 kb on + strand, within CA264_09590at 2238.667 kb on - strand, within CA264_09590at 2238.675 kb on + strand, within CA264_09590at 2238.676 kb on - strand, within CA264_09590at 2238.702 kb on - strand, within CA264_09590at 2238.741 kb on + strand, within CA264_09590at 2238.742 kb on - strand, within CA264_09590at 2238.742 kb on - strand, within CA264_09590at 2238.775 kb on + strand, within CA264_09590at 2238.823 kb on + strand, within CA264_09590at 2238.860 kb on + strand, within CA264_09590at 2238.861 kb on - strand, within CA264_09590at 2238.863 kb on - strand, within CA264_09590at 2238.914 kb on + strand, within CA264_09590at 2238.917 kb on + strand, within CA264_09590at 2238.917 kb on + strand, within CA264_09590at 2238.923 kb on + strand, within CA264_09590at 2238.923 kb on + strand, within CA264_09590at 2238.927 kb on + strand, within CA264_09590at 2238.928 kb on - strand, within CA264_09590at 2238.947 kb on - strand, within CA264_09590at 2238.947 kb on - strand, within CA264_09590at 2238.973 kb on - strand, within CA264_09590at 2238.973 kb on - strand, within CA264_09590at 2238.975 kb on - strand, within CA264_09590at 2239.058 kb on + strand, within CA264_09590at 2239.108 kb on - strandat 2239.180 kb on + strandat 2239.181 kb on - strandat 2239.244 kb on - strandat 2239.246 kb on - strandat 2239.259 kb on - strandat 2239.263 kb on - strandat 2239.280 kb on - strand, within CA264_09595at 2239.314 kb on - strand, within CA264_09595at 2239.410 kb on + strand, within CA264_09595at 2239.410 kb on + strand, within CA264_09595at 2239.411 kb on - strand, within CA264_09595at 2239.420 kb on + strand, within CA264_09595at 2239.430 kb on + strand, within CA264_09595at 2239.431 kb on - strand, within CA264_09595at 2239.455 kb on - strand, within CA264_09595

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml
remove
2,237,013 + CA264_09575 0.63 -0.2
2,237,033 - CA264_09575 0.68 +0.4
2,237,106 - CA264_09575 0.85 +0.7
2,237,106 - CA264_09575 0.85 -0.1
2,237,106 - CA264_09575 0.85 -0.5
2,237,112 + CA264_09575 0.86 -0.4
2,237,113 - CA264_09575 0.87 -0.0
2,237,113 - CA264_09575 0.87 -0.4
2,237,115 - CA264_09575 0.87 +0.0
2,237,221 - +0.7
2,237,370 + +0.2
2,237,379 - -0.4
2,237,421 - -0.3
2,237,451 + -0.2
2,237,514 - -0.6
2,237,523 - -1.2
2,237,587 - -1.1
2,237,671 - CA264_09580 0.25 -0.7
2,237,676 + CA264_09580 0.26 +0.4
2,237,677 - CA264_09580 0.26 -0.3
2,237,677 - CA264_09580 0.26 +0.7
2,237,677 - CA264_09580 0.26 -0.8
2,237,678 + CA264_09580 0.27 -0.1
2,237,678 + CA264_09580 0.27 +0.2
2,237,678 + CA264_09580 0.27 -0.5
2,237,679 - CA264_09580 0.27 -0.3
2,237,679 - CA264_09580 0.27 -0.3
2,237,689 + CA264_09580 0.30 -0.3
2,237,711 - CA264_09580 0.37 -0.2
2,237,731 - CA264_09580 0.43 +0.4
2,237,770 + CA264_09580 0.55 -0.9
2,237,790 + CA264_09580 0.61 -0.3
2,237,790 + CA264_09580 0.61 -0.3
2,237,790 + CA264_09580 0.61 +0.7
2,237,791 - CA264_09580 0.61 -0.0
2,237,795 + CA264_09580 0.62 +0.1
2,237,796 - CA264_09580 0.62 +0.1
2,237,797 + CA264_09580 0.63 +0.2
2,237,797 + CA264_09580 0.63 -0.4
2,237,797 + CA264_09580 0.63 +1.0
2,237,797 + CA264_09580 0.63 +1.5
2,237,798 - CA264_09580 0.63 +0.7
2,237,812 - CA264_09580 0.67 +0.4
2,237,817 + CA264_09580 0.69 +0.7
2,237,818 - CA264_09580 0.69 -0.0
2,237,831 - CA264_09580 0.73 -0.2
2,237,940 - -0.3
2,237,944 + +0.9
2,237,944 + +0.5
2,237,945 - -0.0
2,237,991 + +0.5
2,238,012 + -1.1
2,238,060 + CA264_09585 0.12 -0.3
2,238,120 + CA264_09585 0.25 +0.7
2,238,120 + CA264_09585 0.25 -0.2
2,238,120 + CA264_09585 0.25 -0.3
2,238,121 - CA264_09585 0.26 -0.2
2,238,167 + CA264_09585 0.36 -1.3
2,238,180 - CA264_09585 0.39 -1.4
2,238,186 + CA264_09585 0.40 -0.2
2,238,186 + CA264_09585 0.40 +0.3
2,238,187 - CA264_09585 0.40 -0.3
2,238,187 - CA264_09585 0.40 -0.4
2,238,211 - CA264_09585 0.46 -0.9
2,238,232 - CA264_09585 0.50 -0.5
2,238,232 - CA264_09585 0.50 +0.1
2,238,245 + CA264_09585 0.53 +0.1
2,238,293 + CA264_09585 0.64 -0.8
2,238,315 + CA264_09585 0.69 -0.9
2,238,322 + CA264_09585 0.70 -0.5
2,238,323 - CA264_09585 0.70 -0.2
2,238,369 - CA264_09585 0.81 +0.1
2,238,370 + CA264_09585 0.81 +2.2
2,238,370 + CA264_09585 0.81 -0.6
2,238,373 + CA264_09585 0.82 -2.2
2,238,457 - +0.8
2,238,464 + +0.2
2,238,467 + +0.7
2,238,531 + +1.0
2,238,531 + +0.8
2,238,535 - -1.2
2,238,569 + -0.7
2,238,594 + +0.2
2,238,614 + CA264_09590 0.13 -0.8
2,238,614 + CA264_09590 0.13 -0.2
2,238,615 - CA264_09590 0.13 +0.8
2,238,636 - CA264_09590 0.17 -0.4
2,238,659 + CA264_09590 0.21 -1.0
2,238,667 - CA264_09590 0.22 -0.3
2,238,675 + CA264_09590 0.23 +0.2
2,238,676 - CA264_09590 0.24 +0.7
2,238,702 - CA264_09590 0.28 +0.0
2,238,741 + CA264_09590 0.35 +0.2
2,238,742 - CA264_09590 0.35 -0.3
2,238,742 - CA264_09590 0.35 +0.8
2,238,775 + CA264_09590 0.40 +0.4
2,238,823 + CA264_09590 0.49 +0.1
2,238,860 + CA264_09590 0.55 +0.4
2,238,861 - CA264_09590 0.55 +0.3
2,238,863 - CA264_09590 0.55 +0.9
2,238,914 + CA264_09590 0.64 -0.1
2,238,917 + CA264_09590 0.65 -0.9
2,238,917 + CA264_09590 0.65 -0.3
2,238,923 + CA264_09590 0.66 -0.1
2,238,923 + CA264_09590 0.66 +0.3
2,238,927 + CA264_09590 0.66 -0.3
2,238,928 - CA264_09590 0.66 -0.2
2,238,947 - CA264_09590 0.70 -1.7
2,238,947 - CA264_09590 0.70 -0.2
2,238,973 - CA264_09590 0.74 +0.4
2,238,973 - CA264_09590 0.74 -0.1
2,238,975 - CA264_09590 0.74 -0.4
2,239,058 + CA264_09590 0.89 +0.2
2,239,108 - -0.6
2,239,180 + +0.8
2,239,181 - -0.1
2,239,244 - -0.7
2,239,246 - -0.0
2,239,259 - -0.7
2,239,263 - +0.0
2,239,280 - CA264_09595 0.12 +0.4
2,239,314 - CA264_09595 0.18 +0.1
2,239,410 + CA264_09595 0.34 +0.7
2,239,410 + CA264_09595 0.34 -1.7
2,239,411 - CA264_09595 0.35 +0.0
2,239,420 + CA264_09595 0.36 +0.1
2,239,430 + CA264_09595 0.38 -0.6
2,239,431 - CA264_09595 0.38 -0.3
2,239,455 - CA264_09595 0.42 +0.1

Or see this region's nucleotide sequence