Experiment: m.b. Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09145 and CA264_09150 are separated by 126 nucleotides CA264_09150 and CA264_09155 are separated by 188 nucleotides
CA264_09145: CA264_09145 - ammonia channel protein, at 2,143,987 to 2,145,348
_09145
CA264_09150: CA264_09150 - Crp/Fnr family transcriptional regulator, at 2,145,475 to 2,146,122
_09150
CA264_09155: CA264_09155 - anion permease, at 2,146,311 to 2,147,111
_09155
Position (kb)
2145
2146
2147 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2144.506 kb on + strand, within CA264_09145 at 2144.558 kb on + strand, within CA264_09145 at 2144.558 kb on + strand, within CA264_09145 at 2144.559 kb on - strand, within CA264_09145 at 2144.595 kb on + strand, within CA264_09145 at 2144.595 kb on + strand, within CA264_09145 at 2144.595 kb on + strand, within CA264_09145 at 2144.596 kb on - strand, within CA264_09145 at 2144.596 kb on - strand, within CA264_09145 at 2144.596 kb on - strand, within CA264_09145 at 2144.596 kb on - strand, within CA264_09145 at 2144.596 kb on - strand, within CA264_09145 at 2144.596 kb on - strand, within CA264_09145 at 2144.596 kb on - strand, within CA264_09145 at 2144.596 kb on - strand, within CA264_09145 at 2144.654 kb on + strand, within CA264_09145 at 2144.655 kb on - strand, within CA264_09145 at 2144.680 kb on + strand, within CA264_09145 at 2144.684 kb on + strand, within CA264_09145 at 2144.685 kb on - strand, within CA264_09145 at 2144.685 kb on - strand, within CA264_09145 at 2144.751 kb on + strand, within CA264_09145 at 2144.751 kb on + strand, within CA264_09145 at 2144.863 kb on - strand, within CA264_09145 at 2144.868 kb on + strand, within CA264_09145 at 2144.869 kb on - strand, within CA264_09145 at 2144.979 kb on - strand, within CA264_09145 at 2144.979 kb on - strand, within CA264_09145 at 2144.979 kb on - strand, within CA264_09145 at 2145.071 kb on + strand, within CA264_09145 at 2145.071 kb on + strand, within CA264_09145 at 2145.134 kb on - strand, within CA264_09145 at 2145.134 kb on - strand, within CA264_09145 at 2145.341 kb on - strand at 2145.341 kb on - strand at 2145.442 kb on - strand at 2145.689 kb on - strand, within CA264_09150 at 2145.691 kb on + strand, within CA264_09150 at 2145.691 kb on + strand, within CA264_09150 at 2145.691 kb on + strand, within CA264_09150 at 2145.691 kb on + strand, within CA264_09150 at 2145.692 kb on - strand, within CA264_09150 at 2145.833 kb on - strand, within CA264_09150 at 2145.835 kb on - strand, within CA264_09150 at 2145.916 kb on - strand, within CA264_09150 at 2146.100 kb on + strand at 2146.100 kb on + strand at 2146.100 kb on + strand at 2146.101 kb on - strand at 2146.120 kb on + strand at 2146.120 kb on + strand at 2146.120 kb on + strand at 2146.120 kb on + strand at 2146.121 kb on - strand at 2146.121 kb on - strand at 2146.172 kb on + strand at 2146.172 kb on + strand at 2146.173 kb on - strand at 2146.173 kb on - strand at 2146.176 kb on + strand at 2146.182 kb on + strand at 2146.183 kb on - strand at 2146.203 kb on - strand at 2146.203 kb on - strand at 2146.253 kb on - strand at 2146.260 kb on - strand at 2146.274 kb on - strand at 2146.280 kb on - strand at 2146.284 kb on + strand at 2146.383 kb on - strand at 2146.384 kb on + strand at 2146.384 kb on + strand at 2146.385 kb on - strand at 2146.385 kb on - strand at 2146.385 kb on - strand at 2146.389 kb on - strand at 2146.393 kb on + strand, within CA264_09155 at 2146.444 kb on - strand, within CA264_09155 at 2146.575 kb on + strand, within CA264_09155 at 2146.579 kb on + strand, within CA264_09155 at 2146.580 kb on - strand, within CA264_09155 at 2146.608 kb on - strand, within CA264_09155 at 2146.788 kb on - strand, within CA264_09155 at 2146.798 kb on + strand, within CA264_09155 at 2146.894 kb on + strand, within CA264_09155 at 2146.921 kb on + strand, within CA264_09155 at 2146.938 kb on + strand, within CA264_09155 at 2146.938 kb on + strand, within CA264_09155 at 2146.939 kb on - strand, within CA264_09155 at 2146.939 kb on - strand, within CA264_09155 at 2146.943 kb on + strand, within CA264_09155 at 2147.080 kb on - strand at 2147.080 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml remove 2,144,506 + CA264_09145 0.38 +0.6 2,144,558 + CA264_09145 0.42 -1.1 2,144,558 + CA264_09145 0.42 -0.6 2,144,559 - CA264_09145 0.42 +1.1 2,144,595 + CA264_09145 0.45 -0.5 2,144,595 + CA264_09145 0.45 -0.4 2,144,595 + CA264_09145 0.45 -0.4 2,144,596 - CA264_09145 0.45 +0.2 2,144,596 - CA264_09145 0.45 +0.5 2,144,596 - CA264_09145 0.45 +2.2 2,144,596 - CA264_09145 0.45 -0.2 2,144,596 - CA264_09145 0.45 -0.9 2,144,596 - CA264_09145 0.45 +0.1 2,144,596 - CA264_09145 0.45 -1.2 2,144,596 - CA264_09145 0.45 +0.3 2,144,654 + CA264_09145 0.49 -0.4 2,144,655 - CA264_09145 0.49 +1.2 2,144,680 + CA264_09145 0.51 -1.2 2,144,684 + CA264_09145 0.51 -0.0 2,144,685 - CA264_09145 0.51 -0.7 2,144,685 - CA264_09145 0.51 +0.1 2,144,751 + CA264_09145 0.56 +0.1 2,144,751 + CA264_09145 0.56 -1.7 2,144,863 - CA264_09145 0.64 +0.9 2,144,868 + CA264_09145 0.65 -0.2 2,144,869 - CA264_09145 0.65 +0.2 2,144,979 - CA264_09145 0.73 +0.8 2,144,979 - CA264_09145 0.73 +0.8 2,144,979 - CA264_09145 0.73 +0.1 2,145,071 + CA264_09145 0.80 -0.1 2,145,071 + CA264_09145 0.80 -0.3 2,145,134 - CA264_09145 0.84 +0.6 2,145,134 - CA264_09145 0.84 -0.5 2,145,341 - -0.1 2,145,341 - -1.9 2,145,442 - +0.5 2,145,689 - CA264_09150 0.33 +0.1 2,145,691 + CA264_09150 0.33 +0.4 2,145,691 + CA264_09150 0.33 +1.2 2,145,691 + CA264_09150 0.33 +0.2 2,145,691 + CA264_09150 0.33 +0.1 2,145,692 - CA264_09150 0.33 +0.9 2,145,833 - CA264_09150 0.55 +0.2 2,145,835 - CA264_09150 0.56 -0.4 2,145,916 - CA264_09150 0.68 -0.3 2,146,100 + +0.1 2,146,100 + -0.1 2,146,100 + -0.8 2,146,101 - -0.9 2,146,120 + +0.9 2,146,120 + +0.9 2,146,120 + -0.8 2,146,120 + +0.2 2,146,121 - -0.6 2,146,121 - +0.1 2,146,172 + -0.6 2,146,172 + +0.4 2,146,173 - -0.4 2,146,173 - -0.8 2,146,176 + -0.8 2,146,182 + +1.2 2,146,183 - -0.8 2,146,203 - -0.4 2,146,203 - +0.6 2,146,253 - -0.4 2,146,260 - -1.4 2,146,274 - +1.6 2,146,280 - +0.2 2,146,284 + +0.2 2,146,383 - +0.6 2,146,384 + -1.2 2,146,384 + -0.7 2,146,385 - -1.1 2,146,385 - -1.1 2,146,385 - +1.3 2,146,389 - +0.0 2,146,393 + CA264_09155 0.10 -0.4 2,146,444 - CA264_09155 0.17 -0.5 2,146,575 + CA264_09155 0.33 -0.4 2,146,579 + CA264_09155 0.33 -0.7 2,146,580 - CA264_09155 0.34 -0.7 2,146,608 - CA264_09155 0.37 -0.0 2,146,788 - CA264_09155 0.60 -0.9 2,146,798 + CA264_09155 0.61 +0.1 2,146,894 + CA264_09155 0.73 +1.3 2,146,921 + CA264_09155 0.76 -1.4 2,146,938 + CA264_09155 0.78 -0.0 2,146,938 + CA264_09155 0.78 +2.2 2,146,939 - CA264_09155 0.78 +0.9 2,146,939 - CA264_09155 0.78 -0.8 2,146,943 + CA264_09155 0.79 -1.3 2,147,080 - -0.2 2,147,080 - +0.4
Or see this region's nucleotide sequence