Experiment: m.b. Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08940 and CA264_08945 are separated by 187 nucleotides CA264_08945 and CA264_08950 are separated by 368 nucleotides
CA264_08940: CA264_08940 - cysteine synthase B, at 2,088,186 to 2,089,070
_08940
CA264_08945: CA264_08945 - type 1 glutamine amidotransferase domain-containing protein, at 2,089,258 to 2,089,938
_08945
CA264_08950: CA264_08950 - short-chain dehydrogenase/reductase, at 2,090,307 to 2,091,143
_08950
Position (kb)
2089
2090 Strain fitness (log2 ratio)
-1
0
1 at 2088.375 kb on + strand, within CA264_08940 at 2088.376 kb on - strand, within CA264_08940 at 2088.667 kb on + strand, within CA264_08940 at 2088.698 kb on - strand, within CA264_08940 at 2088.702 kb on + strand, within CA264_08940 at 2088.897 kb on + strand, within CA264_08940 at 2088.934 kb on + strand, within CA264_08940 at 2089.014 kb on + strand at 2089.059 kb on + strand at 2089.060 kb on - strand at 2089.088 kb on + strand at 2089.089 kb on - strand at 2089.098 kb on - strand at 2089.120 kb on + strand at 2089.345 kb on + strand, within CA264_08945 at 2089.377 kb on - strand, within CA264_08945 at 2089.380 kb on + strand, within CA264_08945 at 2089.381 kb on - strand, within CA264_08945 at 2089.381 kb on - strand, within CA264_08945 at 2089.554 kb on + strand, within CA264_08945 at 2089.594 kb on - strand, within CA264_08945 at 2089.844 kb on + strand, within CA264_08945 at 2089.844 kb on + strand, within CA264_08945 at 2089.847 kb on + strand, within CA264_08945 at 2089.848 kb on - strand, within CA264_08945 at 2089.948 kb on + strand at 2089.949 kb on - strand at 2089.949 kb on - strand at 2089.953 kb on + strand at 2089.959 kb on + strand at 2089.960 kb on - strand at 2090.050 kb on + strand at 2090.083 kb on + strand at 2090.084 kb on - strand at 2090.118 kb on + strand at 2090.202 kb on + strand at 2090.227 kb on + strand at 2090.238 kb on + strand at 2090.249 kb on + strand at 2090.258 kb on - strand at 2090.277 kb on - strand at 2090.309 kb on - strand at 2090.395 kb on + strand, within CA264_08950 at 2090.396 kb on - strand, within CA264_08950 at 2090.542 kb on + strand, within CA264_08950 at 2090.561 kb on + strand, within CA264_08950 at 2090.562 kb on - strand, within CA264_08950 at 2090.572 kb on - strand, within CA264_08950 at 2090.616 kb on + strand, within CA264_08950 at 2090.617 kb on - strand, within CA264_08950 at 2090.628 kb on + strand, within CA264_08950 at 2090.628 kb on + strand, within CA264_08950 at 2090.718 kb on - strand, within CA264_08950 at 2090.749 kb on - strand, within CA264_08950 at 2090.763 kb on - strand, within CA264_08950
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml remove 2,088,375 + CA264_08940 0.21 +0.1 2,088,376 - CA264_08940 0.21 -0.6 2,088,667 + CA264_08940 0.54 -0.3 2,088,698 - CA264_08940 0.58 -0.6 2,088,702 + CA264_08940 0.58 +0.8 2,088,897 + CA264_08940 0.80 -1.0 2,088,934 + CA264_08940 0.85 -1.6 2,089,014 + -0.6 2,089,059 + -0.3 2,089,060 - -0.1 2,089,088 + +1.4 2,089,089 - -0.3 2,089,098 - +0.1 2,089,120 + -0.2 2,089,345 + CA264_08945 0.13 +0.9 2,089,377 - CA264_08945 0.17 -0.4 2,089,380 + CA264_08945 0.18 -1.0 2,089,381 - CA264_08945 0.18 +0.2 2,089,381 - CA264_08945 0.18 -0.0 2,089,554 + CA264_08945 0.43 -1.2 2,089,594 - CA264_08945 0.49 -0.4 2,089,844 + CA264_08945 0.86 -0.1 2,089,844 + CA264_08945 0.86 +0.5 2,089,847 + CA264_08945 0.86 -1.2 2,089,848 - CA264_08945 0.87 +0.1 2,089,948 + -0.1 2,089,949 - -1.0 2,089,949 - -1.0 2,089,953 + -1.0 2,089,959 + -0.5 2,089,960 - -0.3 2,090,050 + -0.1 2,090,083 + +1.6 2,090,084 - +0.2 2,090,118 + -0.5 2,090,202 + -0.7 2,090,227 + -0.5 2,090,238 + -0.2 2,090,249 + +1.6 2,090,258 - -0.2 2,090,277 - +0.2 2,090,309 - -0.2 2,090,395 + CA264_08950 0.11 -0.1 2,090,396 - CA264_08950 0.11 -0.1 2,090,542 + CA264_08950 0.28 -0.5 2,090,561 + CA264_08950 0.30 -0.4 2,090,562 - CA264_08950 0.30 +0.0 2,090,572 - CA264_08950 0.32 -0.2 2,090,616 + CA264_08950 0.37 -0.2 2,090,617 - CA264_08950 0.37 -1.4 2,090,628 + CA264_08950 0.38 +1.6 2,090,628 + CA264_08950 0.38 -0.3 2,090,718 - CA264_08950 0.49 -1.1 2,090,749 - CA264_08950 0.53 -0.5 2,090,763 - CA264_08950 0.54 -0.4
Or see this region's nucleotide sequence