Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07480

Experiment: m.b. Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07475 and CA264_07480 are separated by 20 nucleotidesCA264_07480 and CA264_07485 are separated by 3 nucleotidesCA264_07485 and CA264_07490 are separated by 133 nucleotides CA264_07475: CA264_07475 - hypothetical protein, at 1,730,961 to 1,732,550 _07475 CA264_07480: CA264_07480 - DUF58 domain-containing protein, at 1,732,571 to 1,733,482 _07480 CA264_07485: CA264_07485 - septal ring lytic transglycosylase RlpA family lipoprotein, at 1,733,486 to 1,733,899 _07485 CA264_07490: CA264_07490 - RNA-binding protein, at 1,734,033 to 1,734,362 _07490 Position (kb) 1732 1733 1734Strain fitness (log2 ratio) -1 0 1 2at 1731.573 kb on - strand, within CA264_07475at 1731.648 kb on + strand, within CA264_07475at 1731.655 kb on + strand, within CA264_07475at 1731.761 kb on + strand, within CA264_07475at 1731.765 kb on + strand, within CA264_07475at 1731.765 kb on + strand, within CA264_07475at 1731.765 kb on + strand, within CA264_07475at 1731.766 kb on - strand, within CA264_07475at 1731.768 kb on + strand, within CA264_07475at 1731.768 kb on + strand, within CA264_07475at 1731.769 kb on - strand, within CA264_07475at 1731.904 kb on - strand, within CA264_07475at 1731.925 kb on + strand, within CA264_07475at 1731.926 kb on - strand, within CA264_07475at 1732.125 kb on + strand, within CA264_07475at 1732.126 kb on - strand, within CA264_07475at 1732.126 kb on - strand, within CA264_07475at 1732.339 kb on + strand, within CA264_07475at 1732.352 kb on - strand, within CA264_07475at 1732.378 kb on - strand, within CA264_07475at 1732.378 kb on - strand, within CA264_07475at 1732.437 kb on + strandat 1732.437 kb on + strandat 1732.438 kb on - strandat 1732.439 kb on + strandat 1732.440 kb on - strandat 1732.447 kb on + strandat 1732.447 kb on + strandat 1732.448 kb on - strandat 1732.475 kb on + strandat 1732.517 kb on - strandat 1732.593 kb on - strandat 1732.593 kb on - strandat 1732.605 kb on + strandat 1732.615 kb on + strandat 1732.616 kb on - strandat 1732.659 kb on + strandat 1732.714 kb on - strand, within CA264_07480at 1732.780 kb on - strand, within CA264_07480at 1732.842 kb on - strand, within CA264_07480at 1732.910 kb on + strand, within CA264_07480at 1732.910 kb on + strand, within CA264_07480at 1732.910 kb on + strand, within CA264_07480at 1733.203 kb on - strand, within CA264_07480at 1733.205 kb on + strand, within CA264_07480at 1733.205 kb on + strand, within CA264_07480at 1733.206 kb on - strand, within CA264_07480at 1733.209 kb on + strand, within CA264_07480at 1733.263 kb on - strand, within CA264_07480at 1733.338 kb on - strand, within CA264_07480at 1733.453 kb on + strandat 1733.454 kb on - strandat 1733.495 kb on - strandat 1733.630 kb on + strand, within CA264_07485at 1733.631 kb on - strand, within CA264_07485at 1733.762 kb on - strand, within CA264_07485at 1733.812 kb on - strand, within CA264_07485at 1733.838 kb on + strand, within CA264_07485at 1733.839 kb on - strand, within CA264_07485at 1733.880 kb on - strandat 1733.891 kb on + strandat 1733.891 kb on + strandat 1733.894 kb on - strandat 1733.894 kb on - strandat 1733.900 kb on - strandat 1733.902 kb on + strandat 1733.903 kb on - strandat 1733.907 kb on + strandat 1733.974 kb on + strandat 1733.987 kb on + strandat 1733.987 kb on + strandat 1733.992 kb on + strandat 1734.233 kb on + strand, within CA264_07490at 1734.350 kb on + strandat 1734.386 kb on + strandat 1734.386 kb on + strandat 1734.429 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml
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1,731,573 - CA264_07475 0.38 -0.8
1,731,648 + CA264_07475 0.43 +0.3
1,731,655 + CA264_07475 0.44 +0.6
1,731,761 + CA264_07475 0.50 -0.7
1,731,765 + CA264_07475 0.51 -0.7
1,731,765 + CA264_07475 0.51 -1.0
1,731,765 + CA264_07475 0.51 +0.4
1,731,766 - CA264_07475 0.51 -0.4
1,731,768 + CA264_07475 0.51 -0.6
1,731,768 + CA264_07475 0.51 +0.8
1,731,769 - CA264_07475 0.51 +0.0
1,731,904 - CA264_07475 0.59 -0.6
1,731,925 + CA264_07475 0.61 -0.4
1,731,926 - CA264_07475 0.61 -0.4
1,732,125 + CA264_07475 0.73 -0.8
1,732,126 - CA264_07475 0.73 -0.0
1,732,126 - CA264_07475 0.73 -1.0
1,732,339 + CA264_07475 0.87 +0.1
1,732,352 - CA264_07475 0.87 -0.2
1,732,378 - CA264_07475 0.89 -0.1
1,732,378 - CA264_07475 0.89 +0.5
1,732,437 + -0.0
1,732,437 + -1.6
1,732,438 - +0.1
1,732,439 + -0.2
1,732,440 - -0.4
1,732,447 + +0.1
1,732,447 + -0.8
1,732,448 - -0.7
1,732,475 + -0.1
1,732,517 - +1.8
1,732,593 - -1.4
1,732,593 - -1.3
1,732,605 + +0.3
1,732,615 + -0.2
1,732,616 - +0.0
1,732,659 + -0.5
1,732,714 - CA264_07480 0.16 -0.4
1,732,780 - CA264_07480 0.23 -1.6
1,732,842 - CA264_07480 0.30 -0.5
1,732,910 + CA264_07480 0.37 -0.5
1,732,910 + CA264_07480 0.37 -0.1
1,732,910 + CA264_07480 0.37 -0.4
1,733,203 - CA264_07480 0.69 -0.2
1,733,205 + CA264_07480 0.70 +0.7
1,733,205 + CA264_07480 0.70 -0.8
1,733,206 - CA264_07480 0.70 -1.7
1,733,209 + CA264_07480 0.70 -1.1
1,733,263 - CA264_07480 0.76 -0.2
1,733,338 - CA264_07480 0.84 -0.6
1,733,453 + +1.2
1,733,454 - +0.0
1,733,495 - +0.2
1,733,630 + CA264_07485 0.35 +0.1
1,733,631 - CA264_07485 0.35 +0.8
1,733,762 - CA264_07485 0.67 -0.1
1,733,812 - CA264_07485 0.79 -0.6
1,733,838 + CA264_07485 0.85 -0.2
1,733,839 - CA264_07485 0.85 +0.4
1,733,880 - +0.4
1,733,891 + +0.3
1,733,891 + +0.0
1,733,894 - +0.6
1,733,894 - -0.4
1,733,900 - +0.6
1,733,902 + +1.0
1,733,903 - +0.5
1,733,907 + +0.6
1,733,974 + +0.2
1,733,987 + -0.4
1,733,987 + -0.4
1,733,992 + +0.9
1,734,233 + CA264_07490 0.61 -0.5
1,734,350 + +0.9
1,734,386 + -0.0
1,734,386 + +2.2
1,734,429 - -0.6

Or see this region's nucleotide sequence