Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03985

Experiment: m.b. Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03980 and CA264_03985 are separated by 156 nucleotidesCA264_03985 and CA264_03990 are separated by 219 nucleotides CA264_03980: CA264_03980 - hypothetical protein, at 921,791 to 924,523 _03980 CA264_03985: CA264_03985 - hypothetical protein, at 924,680 to 925,408 _03985 CA264_03990: CA264_03990 - alkyl hydroperoxide reductase, at 925,628 to 926,272 _03990 Position (kb) 924 925 926Strain fitness (log2 ratio) -2 -1 0 1 2 3at 923.687 kb on + strand, within CA264_03980at 923.688 kb on - strand, within CA264_03980at 923.688 kb on - strand, within CA264_03980at 923.700 kb on - strand, within CA264_03980at 923.795 kb on + strand, within CA264_03980at 923.822 kb on + strand, within CA264_03980at 923.823 kb on - strand, within CA264_03980at 923.823 kb on - strand, within CA264_03980at 923.834 kb on + strand, within CA264_03980at 923.874 kb on - strand, within CA264_03980at 923.925 kb on + strand, within CA264_03980at 923.932 kb on + strand, within CA264_03980at 923.996 kb on + strand, within CA264_03980at 923.997 kb on - strand, within CA264_03980at 924.063 kb on + strand, within CA264_03980at 924.261 kb on - strandat 924.365 kb on + strandat 924.369 kb on - strandat 924.369 kb on - strandat 924.371 kb on - strandat 924.526 kb on + strandat 924.546 kb on + strandat 924.547 kb on - strandat 924.547 kb on - strandat 924.550 kb on + strandat 924.551 kb on - strandat 924.551 kb on - strandat 924.551 kb on - strandat 924.551 kb on - strandat 924.551 kb on - strandat 924.551 kb on - strandat 924.551 kb on - strandat 924.552 kb on + strandat 924.552 kb on + strandat 924.658 kb on + strandat 924.658 kb on + strandat 924.659 kb on - strandat 924.662 kb on + strandat 924.676 kb on - strandat 924.682 kb on - strandat 924.682 kb on - strandat 924.810 kb on - strand, within CA264_03985at 924.971 kb on - strand, within CA264_03985at 925.027 kb on + strand, within CA264_03985at 925.133 kb on + strand, within CA264_03985at 925.156 kb on + strand, within CA264_03985at 925.157 kb on - strand, within CA264_03985at 925.267 kb on + strand, within CA264_03985at 925.267 kb on + strand, within CA264_03985at 925.267 kb on + strand, within CA264_03985at 925.268 kb on - strand, within CA264_03985at 925.268 kb on - strand, within CA264_03985at 925.326 kb on - strand, within CA264_03985at 925.335 kb on + strand, within CA264_03985at 925.336 kb on - strandat 925.354 kb on - strandat 925.354 kb on - strandat 925.408 kb on + strandat 925.471 kb on - strandat 925.483 kb on - strandat 925.512 kb on + strandat 925.512 kb on + strandat 925.512 kb on + strandat 925.513 kb on - strandat 925.513 kb on - strandat 925.520 kb on + strandat 925.520 kb on + strandat 925.534 kb on + strandat 925.534 kb on + strandat 925.534 kb on + strandat 925.534 kb on + strandat 925.534 kb on + strandat 925.534 kb on + strandat 925.535 kb on - strandat 925.535 kb on - strandat 925.545 kb on + strandat 925.620 kb on - strandat 925.678 kb on - strandat 925.726 kb on + strand, within CA264_03990at 925.735 kb on + strand, within CA264_03990at 925.735 kb on + strand, within CA264_03990at 925.736 kb on - strand, within CA264_03990at 925.736 kb on - strand, within CA264_03990at 925.813 kb on + strand, within CA264_03990at 925.910 kb on + strand, within CA264_03990at 925.910 kb on + strand, within CA264_03990at 925.910 kb on + strand, within CA264_03990at 925.910 kb on + strand, within CA264_03990at 925.910 kb on + strand, within CA264_03990at 925.970 kb on + strand, within CA264_03990at 926.026 kb on + strand, within CA264_03990at 926.071 kb on + strand, within CA264_03990at 926.072 kb on - strand, within CA264_03990at 926.162 kb on + strand, within CA264_03990at 926.200 kb on - strand, within CA264_03990at 926.260 kb on + strandat 926.381 kb on + strandat 926.381 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml
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923,687 + CA264_03980 0.69 -0.6
923,688 - CA264_03980 0.69 -0.5
923,688 - CA264_03980 0.69 -0.4
923,700 - CA264_03980 0.70 -0.4
923,795 + CA264_03980 0.73 +1.4
923,822 + CA264_03980 0.74 -0.5
923,823 - CA264_03980 0.74 -0.0
923,823 - CA264_03980 0.74 +0.8
923,834 + CA264_03980 0.75 -0.1
923,874 - CA264_03980 0.76 -0.3
923,925 + CA264_03980 0.78 -0.4
923,932 + CA264_03980 0.78 -0.0
923,996 + CA264_03980 0.81 -0.5
923,997 - CA264_03980 0.81 +0.6
924,063 + CA264_03980 0.83 +0.0
924,261 - +1.4
924,365 + -0.3
924,369 - -1.5
924,369 - +0.1
924,371 - +1.2
924,526 + +0.3
924,546 + -0.7
924,547 - +1.1
924,547 - -1.2
924,550 + +0.1
924,551 - -0.2
924,551 - -1.7
924,551 - +0.1
924,551 - +0.9
924,551 - +0.9
924,551 - -0.1
924,551 - -0.2
924,552 + -0.0
924,552 + +0.1
924,658 + +0.2
924,658 + -0.0
924,659 - +0.2
924,662 + +0.5
924,676 - -0.5
924,682 - -0.3
924,682 - -0.5
924,810 - CA264_03985 0.18 -0.0
924,971 - CA264_03985 0.40 +0.6
925,027 + CA264_03985 0.48 +0.3
925,133 + CA264_03985 0.62 -1.3
925,156 + CA264_03985 0.65 -0.4
925,157 - CA264_03985 0.65 +0.3
925,267 + CA264_03985 0.81 -0.3
925,267 + CA264_03985 0.81 -0.1
925,267 + CA264_03985 0.81 -0.8
925,268 - CA264_03985 0.81 +0.5
925,268 - CA264_03985 0.81 +2.2
925,326 - CA264_03985 0.89 -0.2
925,335 + CA264_03985 0.90 +0.8
925,336 - -1.4
925,354 - +0.6
925,354 - -0.1
925,408 + +0.3
925,471 - -0.5
925,483 - -0.8
925,512 + +0.1
925,512 + -1.0
925,512 + +0.2
925,513 - -1.0
925,513 - -0.2
925,520 + -0.6
925,520 + -0.3
925,534 + -0.7
925,534 + -0.5
925,534 + -0.7
925,534 + -0.1
925,534 + +0.3
925,534 + -0.0
925,535 - -2.4
925,535 - -1.4
925,545 + -0.1
925,620 - -0.2
925,678 - +0.3
925,726 + CA264_03990 0.15 -1.0
925,735 + CA264_03990 0.17 +0.4
925,735 + CA264_03990 0.17 +0.4
925,736 - CA264_03990 0.17 +0.2
925,736 - CA264_03990 0.17 -0.9
925,813 + CA264_03990 0.29 +0.2
925,910 + CA264_03990 0.44 +0.8
925,910 + CA264_03990 0.44 +0.0
925,910 + CA264_03990 0.44 +1.1
925,910 + CA264_03990 0.44 -0.9
925,910 + CA264_03990 0.44 +2.9
925,970 + CA264_03990 0.53 +0.2
926,026 + CA264_03990 0.62 +0.3
926,071 + CA264_03990 0.69 +0.0
926,072 - CA264_03990 0.69 -0.4
926,162 + CA264_03990 0.83 -0.4
926,200 - CA264_03990 0.89 +0.2
926,260 + -0.7
926,381 + +1.1
926,381 + +1.4

Or see this region's nucleotide sequence