Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00900

Experiment: m.b. Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00895 and CA264_00900 are separated by 95 nucleotidesCA264_00900 and CA264_00905 are separated by 226 nucleotidesCA264_00905 and CA264_00910 are separated by 116 nucleotides CA264_00895: CA264_00895 - hypothetical protein, at 192,278 to 193,285 _00895 CA264_00900: CA264_00900 - phosphonoacetate hydrolase, at 193,381 to 193,722 _00900 CA264_00905: CA264_00905 - hypothetical protein, at 193,949 to 194,410 _00905 CA264_00910: CA264_00910 - hypothetical protein, at 194,527 to 195,810 _00910 Position (kb) 193 194Strain fitness (log2 ratio) -2 -1 0 1 2at 192.385 kb on + strand, within CA264_00895at 192.385 kb on + strand, within CA264_00895at 192.386 kb on - strand, within CA264_00895at 192.391 kb on + strand, within CA264_00895at 192.416 kb on - strand, within CA264_00895at 192.439 kb on - strand, within CA264_00895at 192.460 kb on - strand, within CA264_00895at 192.546 kb on + strand, within CA264_00895at 192.642 kb on + strand, within CA264_00895at 192.643 kb on - strand, within CA264_00895at 192.674 kb on + strand, within CA264_00895at 192.675 kb on - strand, within CA264_00895at 192.678 kb on + strand, within CA264_00895at 192.679 kb on - strand, within CA264_00895at 192.706 kb on + strand, within CA264_00895at 192.709 kb on + strand, within CA264_00895at 192.725 kb on + strand, within CA264_00895at 192.726 kb on - strand, within CA264_00895at 192.762 kb on + strand, within CA264_00895at 192.762 kb on + strand, within CA264_00895at 192.814 kb on + strand, within CA264_00895at 192.830 kb on - strand, within CA264_00895at 192.830 kb on - strand, within CA264_00895at 192.854 kb on - strand, within CA264_00895at 192.854 kb on - strand, within CA264_00895at 192.854 kb on - strand, within CA264_00895at 192.855 kb on + strand, within CA264_00895at 192.855 kb on + strand, within CA264_00895at 192.855 kb on + strand, within CA264_00895at 192.856 kb on - strand, within CA264_00895at 192.871 kb on + strand, within CA264_00895at 192.884 kb on - strand, within CA264_00895at 192.884 kb on - strand, within CA264_00895at 192.892 kb on + strand, within CA264_00895at 192.917 kb on + strand, within CA264_00895at 192.918 kb on - strand, within CA264_00895at 192.918 kb on - strand, within CA264_00895at 192.918 kb on - strand, within CA264_00895at 192.921 kb on - strand, within CA264_00895at 192.921 kb on - strand, within CA264_00895at 192.923 kb on + strand, within CA264_00895at 192.928 kb on + strand, within CA264_00895at 192.928 kb on + strand, within CA264_00895at 192.929 kb on - strand, within CA264_00895at 192.968 kb on - strand, within CA264_00895at 192.970 kb on + strand, within CA264_00895at 192.979 kb on + strand, within CA264_00895at 192.990 kb on + strand, within CA264_00895at 193.006 kb on - strand, within CA264_00895at 193.089 kb on - strand, within CA264_00895at 193.090 kb on + strand, within CA264_00895at 193.090 kb on + strand, within CA264_00895at 193.090 kb on + strand, within CA264_00895at 193.091 kb on - strand, within CA264_00895at 193.123 kb on + strand, within CA264_00895at 193.124 kb on - strand, within CA264_00895at 193.127 kb on + strand, within CA264_00895at 193.127 kb on + strand, within CA264_00895at 193.151 kb on - strand, within CA264_00895at 193.151 kb on - strand, within CA264_00895at 193.173 kb on + strand, within CA264_00895at 193.174 kb on - strand, within CA264_00895at 193.174 kb on - strand, within CA264_00895at 193.174 kb on - strand, within CA264_00895at 193.176 kb on - strand, within CA264_00895at 193.176 kb on - strand, within CA264_00895at 193.176 kb on - strand, within CA264_00895at 193.177 kb on + strand, within CA264_00895at 193.177 kb on + strand, within CA264_00895at 193.177 kb on + strand, within CA264_00895at 193.178 kb on - strand, within CA264_00895at 193.184 kb on + strand, within CA264_00895at 193.209 kb on + strandat 193.209 kb on + strandat 193.209 kb on + strandat 193.234 kb on - strandat 193.283 kb on + strandat 193.284 kb on - strandat 193.304 kb on - strandat 193.304 kb on - strandat 193.307 kb on + strandat 193.307 kb on + strandat 193.307 kb on + strandat 193.307 kb on + strandat 193.324 kb on - strandat 193.337 kb on - strandat 193.337 kb on - strandat 193.362 kb on + strandat 193.363 kb on - strandat 193.366 kb on + strandat 193.369 kb on + strandat 193.369 kb on + strandat 193.370 kb on - strandat 193.414 kb on - strandat 193.414 kb on - strandat 193.511 kb on + strand, within CA264_00900at 193.512 kb on - strand, within CA264_00900at 193.512 kb on - strand, within CA264_00900at 193.518 kb on - strand, within CA264_00900at 193.521 kb on - strand, within CA264_00900at 193.539 kb on - strand, within CA264_00900at 193.747 kb on - strandat 193.756 kb on + strandat 193.772 kb on - strandat 193.816 kb on - strandat 193.871 kb on + strandat 193.871 kb on + strandat 193.871 kb on + strandat 193.872 kb on - strandat 193.872 kb on - strandat 193.872 kb on - strandat 193.983 kb on - strandat 193.984 kb on + strandat 193.985 kb on - strandat 194.237 kb on - strand, within CA264_00905at 194.304 kb on + strand, within CA264_00905at 194.362 kb on - strand, within CA264_00905at 194.362 kb on - strand, within CA264_00905at 194.391 kb on + strandat 194.392 kb on - strandat 194.392 kb on - strandat 194.397 kb on - strandat 194.397 kb on - strandat 194.397 kb on - strandat 194.458 kb on - strandat 194.494 kb on + strandat 194.514 kb on - strandat 194.516 kb on - strandat 194.548 kb on + strandat 194.548 kb on + strandat 194.549 kb on - strandat 194.571 kb on + strandat 194.572 kb on - strandat 194.632 kb on + strandat 194.633 kb on - strandat 194.633 kb on - strandat 194.633 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.001 mg/ml
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192,385 + CA264_00895 0.11 -0.3
192,385 + CA264_00895 0.11 +0.6
192,386 - CA264_00895 0.11 +0.1
192,391 + CA264_00895 0.11 -0.3
192,416 - CA264_00895 0.14 -0.3
192,439 - CA264_00895 0.16 +0.7
192,460 - CA264_00895 0.18 +0.9
192,546 + CA264_00895 0.27 -0.4
192,642 + CA264_00895 0.36 -1.2
192,643 - CA264_00895 0.36 -0.2
192,674 + CA264_00895 0.39 -1.1
192,675 - CA264_00895 0.39 -1.9
192,678 + CA264_00895 0.40 +0.3
192,679 - CA264_00895 0.40 -0.3
192,706 + CA264_00895 0.42 +0.7
192,709 + CA264_00895 0.43 +0.3
192,725 + CA264_00895 0.44 -0.7
192,726 - CA264_00895 0.44 -0.1
192,762 + CA264_00895 0.48 -0.2
192,762 + CA264_00895 0.48 -1.9
192,814 + CA264_00895 0.53 -0.3
192,830 - CA264_00895 0.55 +0.7
192,830 - CA264_00895 0.55 -0.2
192,854 - CA264_00895 0.57 -0.3
192,854 - CA264_00895 0.57 +1.7
192,854 - CA264_00895 0.57 +0.1
192,855 + CA264_00895 0.57 -1.7
192,855 + CA264_00895 0.57 -0.9
192,855 + CA264_00895 0.57 -0.2
192,856 - CA264_00895 0.57 -2.7
192,871 + CA264_00895 0.59 -1.3
192,884 - CA264_00895 0.60 +0.4
192,884 - CA264_00895 0.60 -0.3
192,892 + CA264_00895 0.61 -2.0
192,917 + CA264_00895 0.63 -0.1
192,918 - CA264_00895 0.63 -0.6
192,918 - CA264_00895 0.63 -0.3
192,918 - CA264_00895 0.63 +0.0
192,921 - CA264_00895 0.64 -1.4
192,921 - CA264_00895 0.64 +0.6
192,923 + CA264_00895 0.64 +0.7
192,928 + CA264_00895 0.64 -0.0
192,928 + CA264_00895 0.64 +0.1
192,929 - CA264_00895 0.65 +0.1
192,968 - CA264_00895 0.68 -0.2
192,970 + CA264_00895 0.69 -0.3
192,979 + CA264_00895 0.70 -0.3
192,990 + CA264_00895 0.71 -0.6
193,006 - CA264_00895 0.72 +0.7
193,089 - CA264_00895 0.80 +0.0
193,090 + CA264_00895 0.81 -0.8
193,090 + CA264_00895 0.81 -2.1
193,090 + CA264_00895 0.81 +1.1
193,091 - CA264_00895 0.81 -0.2
193,123 + CA264_00895 0.84 +0.7
193,124 - CA264_00895 0.84 +0.5
193,127 + CA264_00895 0.84 -0.4
193,127 + CA264_00895 0.84 -1.9
193,151 - CA264_00895 0.87 +1.2
193,151 - CA264_00895 0.87 -1.2
193,173 + CA264_00895 0.89 -0.9
193,174 - CA264_00895 0.89 +2.5
193,174 - CA264_00895 0.89 +1.7
193,174 - CA264_00895 0.89 +0.5
193,176 - CA264_00895 0.89 -0.7
193,176 - CA264_00895 0.89 -1.7
193,176 - CA264_00895 0.89 -0.2
193,177 + CA264_00895 0.89 -0.7
193,177 + CA264_00895 0.89 -1.3
193,177 + CA264_00895 0.89 -0.4
193,178 - CA264_00895 0.89 -0.8
193,184 + CA264_00895 0.90 +1.9
193,209 + -0.1
193,209 + +0.2
193,209 + +0.5
193,234 - +0.3
193,283 + -0.6
193,284 - -0.6
193,304 - +0.4
193,304 - -0.6
193,307 + +0.0
193,307 + -0.3
193,307 + -0.5
193,307 + -0.5
193,324 - +0.2
193,337 - -0.4
193,337 - +1.0
193,362 + -0.6
193,363 - -0.1
193,366 + +0.7
193,369 + -0.0
193,369 + +0.4
193,370 - -0.6
193,414 - +0.3
193,414 - +0.4
193,511 + CA264_00900 0.38 -0.5
193,512 - CA264_00900 0.38 +0.3
193,512 - CA264_00900 0.38 -0.7
193,518 - CA264_00900 0.40 -1.4
193,521 - CA264_00900 0.41 -0.1
193,539 - CA264_00900 0.46 -0.4
193,747 - +1.2
193,756 + -0.7
193,772 - +0.5
193,816 - +0.3
193,871 + +0.7
193,871 + +0.7
193,871 + -0.2
193,872 - +0.3
193,872 - -0.4
193,872 - -0.4
193,983 - +0.4
193,984 + -0.1
193,985 - -0.5
194,237 - CA264_00905 0.62 +0.0
194,304 + CA264_00905 0.77 +0.1
194,362 - CA264_00905 0.89 -0.2
194,362 - CA264_00905 0.89 -0.6
194,391 + +0.1
194,392 - -0.5
194,392 - -0.1
194,397 - -0.0
194,397 - -0.0
194,397 - -0.5
194,458 - +0.2
194,494 + -0.1
194,514 - -0.3
194,516 - +2.3
194,548 + +0.2
194,548 + -0.6
194,549 - +0.4
194,571 + +0.6
194,572 - -0.3
194,632 + -0.7
194,633 - +0.0
194,633 - +0.7
194,633 - -0.0

Or see this region's nucleotide sequence