Experiment: Cellohexaose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0517 and Atu0518 are separated by 13 nucleotides Atu0518 and Atu0519 overlap by 4 nucleotides Atu0519 and Atu0520 overlap by 1 nucleotides Atu0520 and Atu0521 overlap by 4 nucleotides Atu0521 and Atu0522 are separated by 14 nucleotides
Atu0517: Atu0517 - Chemotaxis protein histidine kinase, at 506,474 to 508,687
Atu0517
Atu0518: Atu0518 - chemotaxis methyltransferase, at 508,701 to 509,609
Atu0518
Atu0519: Atu0519 - protein-glutamate methylesterase, at 509,606 to 510,661
Atu0519
Atu0520: Atu0520 - chemotaxis receiver protein, at 510,661 to 511,050
Atu0520
Atu0521: Atu0521 - methyl-accepting chemotaxis protein, at 511,047 to 511,592
Atu0521
Atu0522: Atu0522 - hypothetical protein, at 511,607 to 511,990
Atu0522
Position (kb) 509
510
511 Strain fitness (log2 ratio) -1
0
1
2 at 508.686 kb on + strand at 508.693 kb on + strand at 508.813 kb on - strand, within Atu0518 at 508.845 kb on - strand, within Atu0518 at 508.928 kb on - strand, within Atu0518 at 509.027 kb on - strand, within Atu0518 at 509.034 kb on + strand, within Atu0518 at 509.076 kb on + strand, within Atu0518 at 509.211 kb on + strand, within Atu0518 at 509.224 kb on - strand, within Atu0518 at 509.268 kb on - strand, within Atu0518 at 509.350 kb on + strand, within Atu0518 at 509.357 kb on - strand, within Atu0518 at 509.421 kb on + strand, within Atu0518 at 509.450 kb on + strand, within Atu0518 at 509.498 kb on + strand, within Atu0518 at 509.498 kb on + strand, within Atu0518 at 509.498 kb on + strand, within Atu0518 at 509.498 kb on + strand, within Atu0518 at 509.498 kb on + strand, within Atu0518 at 509.506 kb on - strand, within Atu0518 at 509.506 kb on - strand, within Atu0518 at 509.506 kb on - strand, within Atu0518 at 509.544 kb on + strand at 509.603 kb on + strand at 509.611 kb on - strand at 509.662 kb on + strand at 509.674 kb on + strand at 509.682 kb on - strand at 509.722 kb on + strand, within Atu0519 at 509.826 kb on - strand, within Atu0519 at 509.937 kb on + strand, within Atu0519 at 509.974 kb on + strand, within Atu0519 at 509.975 kb on + strand, within Atu0519 at 509.982 kb on - strand, within Atu0519 at 510.083 kb on - strand, within Atu0519 at 510.083 kb on - strand, within Atu0519 at 510.126 kb on + strand, within Atu0519 at 510.215 kb on + strand, within Atu0519 at 510.217 kb on + strand, within Atu0519 at 510.283 kb on + strand, within Atu0519 at 510.291 kb on - strand, within Atu0519 at 510.291 kb on - strand, within Atu0519 at 510.296 kb on - strand, within Atu0519 at 510.330 kb on + strand, within Atu0519 at 510.387 kb on + strand, within Atu0519 at 510.441 kb on + strand, within Atu0519 at 510.469 kb on - strand, within Atu0519 at 510.513 kb on + strand, within Atu0519 at 510.513 kb on + strand, within Atu0519 at 510.521 kb on - strand, within Atu0519 at 510.550 kb on - strand, within Atu0519 at 510.572 kb on - strand at 510.579 kb on + strand at 510.588 kb on + strand at 510.596 kb on + strand at 510.693 kb on - strand at 510.731 kb on - strand, within Atu0520 at 510.767 kb on - strand, within Atu0520 at 510.767 kb on - strand, within Atu0520 at 510.865 kb on - strand, within Atu0520 at 510.930 kb on + strand, within Atu0520 at 510.936 kb on + strand, within Atu0520 at 510.938 kb on - strand, within Atu0520 at 511.091 kb on + strand at 511.091 kb on + strand at 511.099 kb on - strand at 511.099 kb on - strand at 511.164 kb on - strand, within Atu0521 at 511.166 kb on + strand, within Atu0521 at 511.198 kb on - strand, within Atu0521 at 511.203 kb on - strand, within Atu0521 at 511.205 kb on + strand, within Atu0521 at 511.241 kb on + strand, within Atu0521 at 511.241 kb on + strand, within Atu0521 at 511.282 kb on + strand, within Atu0521 at 511.365 kb on + strand, within Atu0521 at 511.443 kb on + strand, within Atu0521 at 511.445 kb on - strand, within Atu0521 at 511.473 kb on + strand, within Atu0521 at 511.507 kb on - strand, within Atu0521 at 511.516 kb on + strand, within Atu0521 at 511.564 kb on - strand at 511.564 kb on - strand at 511.637 kb on - strand at 511.637 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cellohexaose (C) remove 508,686 + -0.1 508,693 + +0.1 508,813 - Atu0518 0.12 -0.1 508,845 - Atu0518 0.16 +1.0 508,928 - Atu0518 0.25 +0.1 509,027 - Atu0518 0.36 +0.1 509,034 + Atu0518 0.37 +0.2 509,076 + Atu0518 0.41 +0.1 509,211 + Atu0518 0.56 -0.1 509,224 - Atu0518 0.58 +0.3 509,268 - Atu0518 0.62 +0.0 509,350 + Atu0518 0.71 +1.6 509,357 - Atu0518 0.72 +0.0 509,421 + Atu0518 0.79 +0.3 509,450 + Atu0518 0.82 +0.5 509,498 + Atu0518 0.88 +0.2 509,498 + Atu0518 0.88 +0.2 509,498 + Atu0518 0.88 +0.2 509,498 + Atu0518 0.88 -0.4 509,498 + Atu0518 0.88 +0.1 509,506 - Atu0518 0.89 +2.0 509,506 - Atu0518 0.89 +0.6 509,506 - Atu0518 0.89 +0.6 509,544 + -0.5 509,603 + +0.6 509,611 - -0.0 509,662 + +0.4 509,674 + -0.1 509,682 - -0.2 509,722 + Atu0519 0.11 -0.9 509,826 - Atu0519 0.21 +0.0 509,937 + Atu0519 0.31 -0.1 509,974 + Atu0519 0.35 +0.6 509,975 + Atu0519 0.35 +0.4 509,982 - Atu0519 0.36 +0.2 510,083 - Atu0519 0.45 +0.1 510,083 - Atu0519 0.45 +0.3 510,126 + Atu0519 0.49 -0.2 510,215 + Atu0519 0.58 +1.6 510,217 + Atu0519 0.58 +0.1 510,283 + Atu0519 0.64 +0.1 510,291 - Atu0519 0.65 -0.2 510,291 - Atu0519 0.65 +0.2 510,296 - Atu0519 0.65 -0.1 510,330 + Atu0519 0.69 -0.1 510,387 + Atu0519 0.74 -0.3 510,441 + Atu0519 0.79 -0.7 510,469 - Atu0519 0.82 +0.1 510,513 + Atu0519 0.86 +0.3 510,513 + Atu0519 0.86 +0.6 510,521 - Atu0519 0.87 +0.2 510,550 - Atu0519 0.89 +0.2 510,572 - +0.2 510,579 + +0.3 510,588 + +1.8 510,596 + +0.1 510,693 - +0.3 510,731 - Atu0520 0.18 +0.6 510,767 - Atu0520 0.27 +0.2 510,767 - Atu0520 0.27 -1.0 510,865 - Atu0520 0.52 -0.7 510,930 + Atu0520 0.69 +0.1 510,936 + Atu0520 0.71 -1.5 510,938 - Atu0520 0.71 +0.2 511,091 + +0.3 511,091 + +0.3 511,099 - +0.0 511,099 - +0.9 511,164 - Atu0521 0.21 -0.4 511,166 + Atu0521 0.22 -0.0 511,198 - Atu0521 0.28 +0.1 511,203 - Atu0521 0.29 +0.4 511,205 + Atu0521 0.29 +0.2 511,241 + Atu0521 0.36 +0.3 511,241 + Atu0521 0.36 +1.1 511,282 + Atu0521 0.43 +0.5 511,365 + Atu0521 0.58 +0.3 511,443 + Atu0521 0.73 -0.2 511,445 - Atu0521 0.73 +0.3 511,473 + Atu0521 0.78 -0.2 511,507 - Atu0521 0.84 +0.5 511,516 + Atu0521 0.86 +1.0 511,564 - -0.1 511,564 - +0.1 511,637 - -0.7 511,637 - +0.3
Or see this region's nucleotide sequence