Experiment: Cellohexaose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0404 and Atu0405 are separated by 130 nucleotides Atu0405 and Atu0406 are separated by 357 nucleotides
Atu0404: Atu0404 - glucose-6-phosphate isomerase, at 398,432 to 400,057
Atu0404
Atu0405: Atu0405 - long-chain-fatty-acid-CoA-ligase, at 400,188 to 401,900
Atu0405
Atu0406: Atu0406 - ABC transporter, nucleotide binding/ATPase protein, at 402,258 to 403,307
Atu0406
Position (kb) 400
401
402 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 400.066 kb on - strand at 400.257 kb on - strand at 400.306 kb on + strand at 400.314 kb on - strand at 400.410 kb on - strand, within Atu0405 at 400.412 kb on + strand, within Atu0405 at 400.445 kb on + strand, within Atu0405 at 400.506 kb on + strand, within Atu0405 at 400.572 kb on - strand, within Atu0405 at 400.614 kb on - strand, within Atu0405 at 400.614 kb on - strand, within Atu0405 at 400.614 kb on - strand, within Atu0405 at 400.641 kb on + strand, within Atu0405 at 400.660 kb on + strand, within Atu0405 at 400.709 kb on + strand, within Atu0405 at 400.709 kb on + strand, within Atu0405 at 400.776 kb on - strand, within Atu0405 at 400.779 kb on + strand, within Atu0405 at 400.787 kb on - strand, within Atu0405 at 400.844 kb on + strand, within Atu0405 at 400.844 kb on - strand, within Atu0405 at 400.844 kb on - strand, within Atu0405 at 400.849 kb on - strand, within Atu0405 at 401.015 kb on + strand, within Atu0405 at 401.015 kb on + strand, within Atu0405 at 401.030 kb on + strand, within Atu0405 at 401.030 kb on + strand, within Atu0405 at 401.072 kb on + strand, within Atu0405 at 401.113 kb on - strand, within Atu0405 at 401.113 kb on - strand, within Atu0405 at 401.127 kb on + strand, within Atu0405 at 401.135 kb on - strand, within Atu0405 at 401.135 kb on - strand, within Atu0405 at 401.154 kb on + strand, within Atu0405 at 401.187 kb on + strand, within Atu0405 at 401.187 kb on + strand, within Atu0405 at 401.187 kb on + strand, within Atu0405 at 401.187 kb on + strand, within Atu0405 at 401.195 kb on - strand, within Atu0405 at 401.200 kb on + strand, within Atu0405 at 401.247 kb on + strand, within Atu0405 at 401.250 kb on - strand, within Atu0405 at 401.255 kb on - strand, within Atu0405 at 401.263 kb on - strand, within Atu0405 at 401.263 kb on - strand, within Atu0405 at 401.284 kb on - strand, within Atu0405 at 401.291 kb on - strand, within Atu0405 at 401.314 kb on - strand, within Atu0405 at 401.331 kb on + strand, within Atu0405 at 401.424 kb on - strand, within Atu0405 at 401.536 kb on - strand, within Atu0405 at 401.547 kb on - strand, within Atu0405 at 401.547 kb on - strand, within Atu0405 at 401.547 kb on - strand, within Atu0405 at 401.603 kb on + strand, within Atu0405 at 401.664 kb on - strand, within Atu0405 at 401.677 kb on - strand, within Atu0405 at 401.681 kb on - strand, within Atu0405 at 401.740 kb on + strand at 401.899 kb on + strand at 401.937 kb on + strand at 401.957 kb on + strand at 402.089 kb on - strand at 402.244 kb on + strand at 402.247 kb on - strand at 402.249 kb on + strand at 402.257 kb on - strand at 402.418 kb on + strand, within Atu0406 at 402.495 kb on + strand, within Atu0406 at 402.561 kb on + strand, within Atu0406 at 402.587 kb on + strand, within Atu0406 at 402.684 kb on + strand, within Atu0406 at 402.728 kb on - strand, within Atu0406 at 402.745 kb on - strand, within Atu0406 at 402.759 kb on + strand, within Atu0406 at 402.888 kb on - strand, within Atu0406
Per-strain Table
Position Strand Gene LocusTag Fraction Cellohexaose (C) remove 400,066 - -0.2 400,257 - -1.4 400,306 + -1.1 400,314 - -0.3 400,410 - Atu0405 0.13 -0.7 400,412 + Atu0405 0.13 -1.3 400,445 + Atu0405 0.15 -1.4 400,506 + Atu0405 0.19 -0.8 400,572 - Atu0405 0.22 -0.6 400,614 - Atu0405 0.25 -1.8 400,614 - Atu0405 0.25 -0.8 400,614 - Atu0405 0.25 -1.1 400,641 + Atu0405 0.26 -0.8 400,660 + Atu0405 0.28 -0.7 400,709 + Atu0405 0.30 +0.7 400,709 + Atu0405 0.30 -1.6 400,776 - Atu0405 0.34 -0.4 400,779 + Atu0405 0.35 -0.7 400,787 - Atu0405 0.35 -2.0 400,844 + Atu0405 0.38 -0.6 400,844 - Atu0405 0.38 -1.1 400,844 - Atu0405 0.38 -1.1 400,849 - Atu0405 0.39 -1.1 401,015 + Atu0405 0.48 -1.9 401,015 + Atu0405 0.48 -1.1 401,030 + Atu0405 0.49 -0.1 401,030 + Atu0405 0.49 +0.1 401,072 + Atu0405 0.52 -1.2 401,113 - Atu0405 0.54 -1.2 401,113 - Atu0405 0.54 -1.6 401,127 + Atu0405 0.55 -1.0 401,135 - Atu0405 0.55 -1.7 401,135 - Atu0405 0.55 -0.9 401,154 + Atu0405 0.56 -1.5 401,187 + Atu0405 0.58 -1.0 401,187 + Atu0405 0.58 -1.7 401,187 + Atu0405 0.58 -0.6 401,187 + Atu0405 0.58 -1.6 401,195 - Atu0405 0.59 -1.9 401,200 + Atu0405 0.59 -3.2 401,247 + Atu0405 0.62 +2.1 401,250 - Atu0405 0.62 -0.3 401,255 - Atu0405 0.62 -1.1 401,263 - Atu0405 0.63 -2.0 401,263 - Atu0405 0.63 -1.9 401,284 - Atu0405 0.64 -0.1 401,291 - Atu0405 0.64 -1.5 401,314 - Atu0405 0.66 -0.3 401,331 + Atu0405 0.67 -1.0 401,424 - Atu0405 0.72 -1.8 401,536 - Atu0405 0.79 -1.3 401,547 - Atu0405 0.79 -1.2 401,547 - Atu0405 0.79 -1.3 401,547 - Atu0405 0.79 +0.2 401,603 + Atu0405 0.83 -1.2 401,664 - Atu0405 0.86 -1.0 401,677 - Atu0405 0.87 -1.2 401,681 - Atu0405 0.87 -1.3 401,740 + -1.2 401,899 + -0.4 401,937 + -0.1 401,957 + +0.5 402,089 - -0.8 402,244 + -0.8 402,247 - +0.1 402,249 + -0.2 402,257 - -0.1 402,418 + Atu0406 0.15 -0.3 402,495 + Atu0406 0.23 +0.3 402,561 + Atu0406 0.29 +0.1 402,587 + Atu0406 0.31 -0.4 402,684 + Atu0406 0.41 -0.3 402,728 - Atu0406 0.45 +0.0 402,745 - Atu0406 0.46 -0.1 402,759 + Atu0406 0.48 -1.3 402,888 - Atu0406 0.60 -0.4
Or see this region's nucleotide sequence