Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23035 and PS417_23040 are separated by 179 nucleotides PS417_23040 and PS417_23045 are separated by 69 nucleotides
PS417_23035: PS417_23035 - D-trehalose PTS system, I, HPr, and IIA components <small>(from data)</small>, at 4,990,500 to 4,993,016
_23035
PS417_23040: PS417_23040 - D-trehalose outer membrane porin <small>(from data)</small>, at 4,993,196 to 4,994,416
_23040
PS417_23045: PS417_23045 - Alpha,alpha-phosphotrehalase (EC 3.2.1.93) <small>(from data)</small>, at 4,994,486 to 4,996,132
_23045
Position (kb) 4993
4994
4995 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 4992.386 kb on + strand, within PS417_23035 at 4992.418 kb on + strand, within PS417_23035 at 4992.822 kb on - strand at 4993.060 kb on - strand at 4993.060 kb on - strand at 4993.197 kb on + strand at 4993.332 kb on + strand, within PS417_23040 at 4993.332 kb on + strand, within PS417_23040 at 4993.333 kb on - strand, within PS417_23040 at 4993.333 kb on - strand, within PS417_23040 at 4993.333 kb on - strand, within PS417_23040 at 4993.338 kb on + strand, within PS417_23040 at 4993.338 kb on + strand, within PS417_23040 at 4993.338 kb on + strand, within PS417_23040 at 4993.339 kb on - strand, within PS417_23040 at 4993.339 kb on - strand, within PS417_23040 at 4993.561 kb on - strand, within PS417_23040 at 4993.664 kb on - strand, within PS417_23040 at 4993.666 kb on - strand, within PS417_23040 at 4993.800 kb on + strand, within PS417_23040 at 4993.800 kb on + strand, within PS417_23040 at 4993.801 kb on - strand, within PS417_23040 at 4993.801 kb on - strand, within PS417_23040 at 4993.806 kb on - strand, within PS417_23040 at 4993.806 kb on - strand, within PS417_23040 at 4993.876 kb on - strand, within PS417_23040 at 4993.920 kb on + strand, within PS417_23040 at 4993.920 kb on + strand, within PS417_23040 at 4993.980 kb on + strand, within PS417_23040 at 4993.981 kb on - strand, within PS417_23040 at 4993.996 kb on + strand, within PS417_23040 at 4994.009 kb on - strand, within PS417_23040 at 4994.016 kb on + strand, within PS417_23040 at 4994.016 kb on + strand, within PS417_23040 at 4994.019 kb on + strand, within PS417_23040 at 4994.079 kb on + strand, within PS417_23040 at 4994.079 kb on + strand, within PS417_23040 at 4994.079 kb on + strand, within PS417_23040 at 4994.139 kb on + strand, within PS417_23040 at 4994.139 kb on + strand, within PS417_23040 at 4994.148 kb on + strand, within PS417_23040 at 4994.436 kb on - strand at 4995.021 kb on + strand, within PS417_23045 at 4995.081 kb on + strand, within PS417_23045 at 4995.081 kb on + strand, within PS417_23045
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 4,992,386 + PS417_23035 0.75 -2.7 4,992,418 + PS417_23035 0.76 -2.0 4,992,822 - -3.3 4,993,060 - -0.4 4,993,060 - -0.3 4,993,197 + -4.4 4,993,332 + PS417_23040 0.11 -4.4 4,993,332 + PS417_23040 0.11 -4.3 4,993,333 - PS417_23040 0.11 -2.4 4,993,333 - PS417_23040 0.11 -1.3 4,993,333 - PS417_23040 0.11 -1.2 4,993,338 + PS417_23040 0.12 -3.0 4,993,338 + PS417_23040 0.12 -4.3 4,993,338 + PS417_23040 0.12 -3.4 4,993,339 - PS417_23040 0.12 -1.1 4,993,339 - PS417_23040 0.12 -1.4 4,993,561 - PS417_23040 0.30 -1.7 4,993,664 - PS417_23040 0.38 -0.2 4,993,666 - PS417_23040 0.38 -3.1 4,993,800 + PS417_23040 0.49 -4.6 4,993,800 + PS417_23040 0.49 -3.4 4,993,801 - PS417_23040 0.50 -4.4 4,993,801 - PS417_23040 0.50 -3.1 4,993,806 - PS417_23040 0.50 -2.8 4,993,806 - PS417_23040 0.50 -1.8 4,993,876 - PS417_23040 0.56 -3.8 4,993,920 + PS417_23040 0.59 -2.6 4,993,920 + PS417_23040 0.59 -4.1 4,993,980 + PS417_23040 0.64 -5.1 4,993,981 - PS417_23040 0.64 -2.4 4,993,996 + PS417_23040 0.66 -3.8 4,994,009 - PS417_23040 0.67 -2.2 4,994,016 + PS417_23040 0.67 -3.6 4,994,016 + PS417_23040 0.67 -3.8 4,994,019 + PS417_23040 0.67 -2.5 4,994,079 + PS417_23040 0.72 -4.1 4,994,079 + PS417_23040 0.72 -0.4 4,994,079 + PS417_23040 0.72 -5.6 4,994,139 + PS417_23040 0.77 -3.2 4,994,139 + PS417_23040 0.77 -2.9 4,994,148 + PS417_23040 0.78 -1.8 4,994,436 - +0.8 4,995,021 + PS417_23045 0.32 -3.5 4,995,081 + PS417_23045 0.36 -2.6 4,995,081 + PS417_23045 0.36 -4.2
Or see this region's nucleotide sequence