Strain Fitness in Pseudomonas simiae WCS417 around PS417_02215

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02210 and PS417_02215 are separated by 315 nucleotidesPS417_02215 and PS417_02220 are separated by 11 nucleotides PS417_02210: PS417_02210 - diguanylate cyclase, at 497,660 to 500,353 _02210 PS417_02215: PS417_02215 - dihydrolipoamide acetyltransferase, at 500,669 to 502,315 _02215 PS417_02220: PS417_02220 - pyruvate dehydrogenase, at 502,327 to 504,972 _02220 Position (kb) 500 501 502 503Strain fitness (log2 ratio) -1 0 1at 499.983 kb on + strand, within PS417_02210at 500.014 kb on + strand, within PS417_02210at 500.015 kb on - strand, within PS417_02210at 500.016 kb on + strand, within PS417_02210at 500.016 kb on + strand, within PS417_02210at 500.017 kb on - strand, within PS417_02210at 500.161 kb on - strandat 500.257 kb on + strandat 500.258 kb on - strandat 500.472 kb on + strandat 500.472 kb on + strandat 500.472 kb on + strandat 500.473 kb on - strandat 500.474 kb on + strandat 500.475 kb on - strandat 500.475 kb on - strandat 500.528 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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499,983 + PS417_02210 0.86 -1.2
500,014 + PS417_02210 0.87 -0.1
500,015 - PS417_02210 0.87 -0.7
500,016 + PS417_02210 0.87 +0.5
500,016 + PS417_02210 0.87 -0.4
500,017 - PS417_02210 0.87 -0.1
500,161 - -0.0
500,257 + -0.1
500,258 - -0.1
500,472 + -0.5
500,472 + -0.3
500,472 + +0.2
500,473 - +0.7
500,474 + +0.1
500,475 - -0.5
500,475 - -0.0
500,528 + -0.7

Or see this region's nucleotide sequence