Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08300 and PS417_08305 are separated by 37 nucleotides PS417_08305 and PS417_08310 are separated by 131 nucleotides
PS417_08300: PS417_08300 - histidine kinase, at 1,817,236 to 1,819,887
_08300
PS417_08305: PS417_08305 - transcriptional regulator, at 1,819,925 to 1,820,614
_08305
PS417_08310: PS417_08310 - alpha/beta hydrolase, at 1,820,746 to 1,821,783
_08310
Position (kb)
1819
1820
1821 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1818.973 kb on - strand, within PS417_08300 at 1819.243 kb on - strand, within PS417_08300 at 1819.351 kb on + strand, within PS417_08300 at 1819.351 kb on + strand, within PS417_08300 at 1819.351 kb on + strand, within PS417_08300 at 1819.351 kb on + strand, within PS417_08300 at 1819.351 kb on + strand, within PS417_08300 at 1819.352 kb on - strand, within PS417_08300 at 1819.352 kb on - strand, within PS417_08300 at 1819.519 kb on + strand at 1819.519 kb on + strand, within PS417_08300 at 1819.519 kb on + strand, within PS417_08300 at 1819.519 kb on + strand, within PS417_08300 at 1819.520 kb on - strand, within PS417_08300 at 1819.520 kb on - strand, within PS417_08300 at 1819.520 kb on - strand, within PS417_08300 at 1819.520 kb on - strand, within PS417_08300 at 1819.705 kb on + strand at 1819.705 kb on + strand at 1819.794 kb on + strand at 1819.795 kb on - strand at 1819.795 kb on - strand at 1820.010 kb on - strand, within PS417_08305 at 1820.019 kb on + strand, within PS417_08305 at 1820.225 kb on + strand, within PS417_08305 at 1820.225 kb on + strand, within PS417_08305 at 1820.225 kb on + strand, within PS417_08305 at 1820.225 kb on + strand, within PS417_08305 at 1820.226 kb on - strand, within PS417_08305 at 1820.403 kb on - strand, within PS417_08305 at 1820.555 kb on - strand at 1820.727 kb on - strand at 1820.727 kb on - strand at 1820.779 kb on - strand at 1820.897 kb on + strand, within PS417_08310 at 1820.898 kb on - strand, within PS417_08310 at 1820.980 kb on - strand, within PS417_08310 at 1821.464 kb on + strand, within PS417_08310 at 1821.577 kb on + strand, within PS417_08310 at 1821.578 kb on - strand, within PS417_08310
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 1,818,973 - PS417_08300 0.65 -0.1 1,819,243 - PS417_08300 0.76 -0.0 1,819,351 + PS417_08300 0.80 -0.2 1,819,351 + PS417_08300 0.80 -0.0 1,819,351 + PS417_08300 0.80 -0.7 1,819,351 + PS417_08300 0.80 +0.1 1,819,351 + PS417_08300 0.80 +1.5 1,819,352 - PS417_08300 0.80 -0.2 1,819,352 - PS417_08300 0.80 +0.7 1,819,519 + +1.5 1,819,519 + PS417_08300 0.86 +0.1 1,819,519 + PS417_08300 0.86 -0.5 1,819,519 + PS417_08300 0.86 -0.2 1,819,520 - PS417_08300 0.86 +0.3 1,819,520 - PS417_08300 0.86 -0.6 1,819,520 - PS417_08300 0.86 -0.3 1,819,520 - PS417_08300 0.86 -0.1 1,819,705 + -0.1 1,819,705 + -0.6 1,819,794 + -0.0 1,819,795 - -0.5 1,819,795 - +0.7 1,820,010 - PS417_08305 0.12 -0.5 1,820,019 + PS417_08305 0.14 -0.9 1,820,225 + PS417_08305 0.43 +0.3 1,820,225 + PS417_08305 0.43 +0.4 1,820,225 + PS417_08305 0.43 -0.3 1,820,225 + PS417_08305 0.43 +0.8 1,820,226 - PS417_08305 0.44 -0.3 1,820,403 - PS417_08305 0.69 -4.5 1,820,555 - -0.1 1,820,727 - -0.5 1,820,727 - +0.3 1,820,779 - +0.5 1,820,897 + PS417_08310 0.15 -1.0 1,820,898 - PS417_08310 0.15 +1.8 1,820,980 - PS417_08310 0.23 +0.5 1,821,464 + PS417_08310 0.69 -0.2 1,821,577 + PS417_08310 0.80 -0.6 1,821,578 - PS417_08310 0.80 +0.6
Or see this region's nucleotide sequence