Strain Fitness in Pseudomonas simiae WCS417 around PS417_08305

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08300 and PS417_08305 are separated by 37 nucleotidesPS417_08305 and PS417_08310 are separated by 131 nucleotides PS417_08300: PS417_08300 - histidine kinase, at 1,817,236 to 1,819,887 _08300 PS417_08305: PS417_08305 - transcriptional regulator, at 1,819,925 to 1,820,614 _08305 PS417_08310: PS417_08310 - alpha/beta hydrolase, at 1,820,746 to 1,821,783 _08310 Position (kb) 1819 1820 1821Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1818.973 kb on - strand, within PS417_08300at 1819.243 kb on - strand, within PS417_08300at 1819.351 kb on + strand, within PS417_08300at 1819.351 kb on + strand, within PS417_08300at 1819.351 kb on + strand, within PS417_08300at 1819.351 kb on + strand, within PS417_08300at 1819.351 kb on + strand, within PS417_08300at 1819.352 kb on - strand, within PS417_08300at 1819.352 kb on - strand, within PS417_08300at 1819.519 kb on + strandat 1819.519 kb on + strand, within PS417_08300at 1819.519 kb on + strand, within PS417_08300at 1819.519 kb on + strand, within PS417_08300at 1819.520 kb on - strand, within PS417_08300at 1819.520 kb on - strand, within PS417_08300at 1819.520 kb on - strand, within PS417_08300at 1819.520 kb on - strand, within PS417_08300at 1819.705 kb on + strandat 1819.705 kb on + strandat 1819.794 kb on + strandat 1819.795 kb on - strandat 1819.795 kb on - strandat 1820.010 kb on - strand, within PS417_08305at 1820.019 kb on + strand, within PS417_08305at 1820.225 kb on + strand, within PS417_08305at 1820.225 kb on + strand, within PS417_08305at 1820.225 kb on + strand, within PS417_08305at 1820.225 kb on + strand, within PS417_08305at 1820.226 kb on - strand, within PS417_08305at 1820.403 kb on - strand, within PS417_08305at 1820.555 kb on - strandat 1820.727 kb on - strandat 1820.727 kb on - strandat 1820.779 kb on - strandat 1820.897 kb on + strand, within PS417_08310at 1820.898 kb on - strand, within PS417_08310at 1820.980 kb on - strand, within PS417_08310at 1821.464 kb on + strand, within PS417_08310at 1821.577 kb on + strand, within PS417_08310at 1821.578 kb on - strand, within PS417_08310

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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1,818,973 - PS417_08300 0.65 -0.1
1,819,243 - PS417_08300 0.76 -0.0
1,819,351 + PS417_08300 0.80 -0.2
1,819,351 + PS417_08300 0.80 -0.0
1,819,351 + PS417_08300 0.80 -0.7
1,819,351 + PS417_08300 0.80 +0.1
1,819,351 + PS417_08300 0.80 +1.5
1,819,352 - PS417_08300 0.80 -0.2
1,819,352 - PS417_08300 0.80 +0.7
1,819,519 + +1.5
1,819,519 + PS417_08300 0.86 +0.1
1,819,519 + PS417_08300 0.86 -0.5
1,819,519 + PS417_08300 0.86 -0.2
1,819,520 - PS417_08300 0.86 +0.3
1,819,520 - PS417_08300 0.86 -0.6
1,819,520 - PS417_08300 0.86 -0.3
1,819,520 - PS417_08300 0.86 -0.1
1,819,705 + -0.1
1,819,705 + -0.6
1,819,794 + -0.0
1,819,795 - -0.5
1,819,795 - +0.7
1,820,010 - PS417_08305 0.12 -0.5
1,820,019 + PS417_08305 0.14 -0.9
1,820,225 + PS417_08305 0.43 +0.3
1,820,225 + PS417_08305 0.43 +0.4
1,820,225 + PS417_08305 0.43 -0.3
1,820,225 + PS417_08305 0.43 +0.8
1,820,226 - PS417_08305 0.44 -0.3
1,820,403 - PS417_08305 0.69 -4.5
1,820,555 - -0.1
1,820,727 - -0.5
1,820,727 - +0.3
1,820,779 - +0.5
1,820,897 + PS417_08310 0.15 -1.0
1,820,898 - PS417_08310 0.15 +1.8
1,820,980 - PS417_08310 0.23 +0.5
1,821,464 + PS417_08310 0.69 -0.2
1,821,577 + PS417_08310 0.80 -0.6
1,821,578 - PS417_08310 0.80 +0.6

Or see this region's nucleotide sequence