Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20355

Experiment: m.b. Chloramphenicol 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20350 and CA264_20355 are separated by 110 nucleotidesCA264_20355 and CA264_20360 are separated by 71 nucleotidesCA264_20360 and CA264_20365 are separated by 595 nucleotides CA264_20350: CA264_20350 - hypothetical protein, at 4,686,855 to 4,688,786 _20350 CA264_20355: CA264_20355 - DUF421 domain-containing protein, at 4,688,897 to 4,689,334 _20355 CA264_20360: CA264_20360 - thiol reductase thioredoxin, at 4,689,406 to 4,689,732 _20360 CA264_20365: CA264_20365 - DNA polymerase III subunit alpha, at 4,690,328 to 4,693,951 _20365 Position (kb) 4688 4689 4690Strain fitness (log2 ratio) -2 -1 0 1 2at 4687.990 kb on - strand, within CA264_20350at 4688.013 kb on + strand, within CA264_20350at 4688.014 kb on - strand, within CA264_20350at 4688.023 kb on + strand, within CA264_20350at 4688.024 kb on - strand, within CA264_20350at 4688.027 kb on + strand, within CA264_20350at 4688.027 kb on + strand, within CA264_20350at 4688.027 kb on + strand, within CA264_20350at 4688.027 kb on + strand, within CA264_20350at 4688.028 kb on - strand, within CA264_20350at 4688.028 kb on - strand, within CA264_20350at 4688.028 kb on - strand, within CA264_20350at 4688.105 kb on - strand, within CA264_20350at 4688.167 kb on - strand, within CA264_20350at 4688.259 kb on + strand, within CA264_20350at 4688.262 kb on - strand, within CA264_20350at 4688.294 kb on - strand, within CA264_20350at 4688.410 kb on - strand, within CA264_20350at 4688.430 kb on + strand, within CA264_20350at 4688.432 kb on + strand, within CA264_20350at 4688.432 kb on + strand, within CA264_20350at 4688.433 kb on - strand, within CA264_20350at 4688.433 kb on - strand, within CA264_20350at 4688.438 kb on - strand, within CA264_20350at 4688.438 kb on - strand, within CA264_20350at 4688.499 kb on + strand, within CA264_20350at 4688.549 kb on + strand, within CA264_20350at 4688.589 kb on + strand, within CA264_20350at 4688.590 kb on - strand, within CA264_20350at 4688.590 kb on - strand, within CA264_20350at 4688.668 kb on + strandat 4688.669 kb on - strandat 4688.742 kb on + strandat 4688.785 kb on - strandat 4688.794 kb on - strandat 4688.796 kb on - strandat 4688.827 kb on + strandat 4689.008 kb on + strand, within CA264_20355at 4689.009 kb on - strand, within CA264_20355at 4689.009 kb on - strand, within CA264_20355at 4689.009 kb on - strand, within CA264_20355at 4689.009 kb on - strand, within CA264_20355at 4689.076 kb on + strand, within CA264_20355at 4689.117 kb on - strand, within CA264_20355at 4689.166 kb on - strand, within CA264_20355at 4689.229 kb on + strand, within CA264_20355at 4689.259 kb on + strand, within CA264_20355at 4689.773 kb on + strandat 4689.773 kb on + strandat 4689.776 kb on + strandat 4689.780 kb on + strandat 4689.785 kb on + strandat 4689.873 kb on - strandat 4689.878 kb on + strandat 4689.879 kb on - strandat 4689.879 kb on - strandat 4689.886 kb on + strandat 4689.887 kb on - strandat 4689.887 kb on - strandat 4689.887 kb on - strandat 4689.951 kb on + strandat 4689.952 kb on - strandat 4690.005 kb on + strandat 4690.043 kb on - strandat 4690.109 kb on - strandat 4690.130 kb on - strandat 4690.213 kb on + strandat 4690.242 kb on - strandat 4690.266 kb on + strandat 4690.268 kb on + strandat 4690.330 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0005 mg/ml
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4,687,990 - CA264_20350 0.59 +0.2
4,688,013 + CA264_20350 0.60 +0.4
4,688,014 - CA264_20350 0.60 +0.1
4,688,023 + CA264_20350 0.60 +0.4
4,688,024 - CA264_20350 0.61 -0.3
4,688,027 + CA264_20350 0.61 +0.0
4,688,027 + CA264_20350 0.61 -1.0
4,688,027 + CA264_20350 0.61 -1.4
4,688,027 + CA264_20350 0.61 +0.2
4,688,028 - CA264_20350 0.61 -0.2
4,688,028 - CA264_20350 0.61 +1.1
4,688,028 - CA264_20350 0.61 +0.2
4,688,105 - CA264_20350 0.65 -0.0
4,688,167 - CA264_20350 0.68 -1.4
4,688,259 + CA264_20350 0.73 +2.2
4,688,262 - CA264_20350 0.73 +1.9
4,688,294 - CA264_20350 0.74 +0.7
4,688,410 - CA264_20350 0.80 -0.2
4,688,430 + CA264_20350 0.82 +0.6
4,688,432 + CA264_20350 0.82 +1.5
4,688,432 + CA264_20350 0.82 -1.1
4,688,433 - CA264_20350 0.82 +0.5
4,688,433 - CA264_20350 0.82 +0.2
4,688,438 - CA264_20350 0.82 -0.8
4,688,438 - CA264_20350 0.82 -1.1
4,688,499 + CA264_20350 0.85 +0.1
4,688,549 + CA264_20350 0.88 -1.8
4,688,589 + CA264_20350 0.90 -1.6
4,688,590 - CA264_20350 0.90 +0.2
4,688,590 - CA264_20350 0.90 -0.2
4,688,668 + -0.0
4,688,669 - -0.0
4,688,742 + +0.4
4,688,785 - +1.0
4,688,794 - +0.2
4,688,796 - -0.2
4,688,827 + -0.4
4,689,008 + CA264_20355 0.25 +0.2
4,689,009 - CA264_20355 0.26 -0.3
4,689,009 - CA264_20355 0.26 -1.4
4,689,009 - CA264_20355 0.26 +0.4
4,689,009 - CA264_20355 0.26 -0.5
4,689,076 + CA264_20355 0.41 -0.8
4,689,117 - CA264_20355 0.50 -0.0
4,689,166 - CA264_20355 0.61 +0.1
4,689,229 + CA264_20355 0.76 +0.9
4,689,259 + CA264_20355 0.83 -0.8
4,689,773 + -1.1
4,689,773 + +1.2
4,689,776 + -0.4
4,689,780 + +0.1
4,689,785 + -0.4
4,689,873 - +0.4
4,689,878 + +0.3
4,689,879 - -1.1
4,689,879 - -1.1
4,689,886 + -0.1
4,689,887 - -0.3
4,689,887 - +1.2
4,689,887 - -1.1
4,689,951 + -0.4
4,689,952 - +0.5
4,690,005 + +1.5
4,690,043 - +1.9
4,690,109 - -1.1
4,690,130 - +1.2
4,690,213 + +0.5
4,690,242 - -1.3
4,690,266 + -1.1
4,690,268 + -0.1
4,690,330 - -0.5

Or see this region's nucleotide sequence