Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18160

Experiment: m.b. Chloramphenicol 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18155 and CA264_18160 are separated by 132 nucleotidesCA264_18160 and CA264_18165 overlap by 4 nucleotides CA264_18155: CA264_18155 - serine hydrolase, at 4,222,023 to 4,223,594 _18155 CA264_18160: CA264_18160 - hypothetical protein, at 4,223,727 to 4,224,632 _18160 CA264_18165: CA264_18165 - S1/P1 Nuclease, at 4,224,629 to 4,225,600 _18165 Position (kb) 4223 4224 4225Strain fitness (log2 ratio) -1 0 1 2 3at 4222.853 kb on - strand, within CA264_18155at 4222.925 kb on + strand, within CA264_18155at 4222.927 kb on + strand, within CA264_18155at 4222.972 kb on + strandat 4223.007 kb on + strand, within CA264_18155at 4223.024 kb on + strand, within CA264_18155at 4223.025 kb on - strand, within CA264_18155at 4223.036 kb on + strand, within CA264_18155at 4223.037 kb on - strand, within CA264_18155at 4223.080 kb on + strand, within CA264_18155at 4223.097 kb on - strand, within CA264_18155at 4223.114 kb on - strand, within CA264_18155at 4223.125 kb on + strand, within CA264_18155at 4223.125 kb on + strand, within CA264_18155at 4223.154 kb on - strand, within CA264_18155at 4223.202 kb on + strand, within CA264_18155at 4223.215 kb on + strand, within CA264_18155at 4223.236 kb on + strand, within CA264_18155at 4223.237 kb on - strand, within CA264_18155at 4223.237 kb on - strand, within CA264_18155at 4223.278 kb on - strand, within CA264_18155at 4223.305 kb on + strand, within CA264_18155at 4223.319 kb on - strand, within CA264_18155at 4223.470 kb on + strandat 4223.605 kb on + strandat 4223.605 kb on + strandat 4223.605 kb on + strandat 4223.605 kb on + strandat 4223.606 kb on - strandat 4223.606 kb on - strandat 4223.609 kb on + strandat 4223.609 kb on + strandat 4223.627 kb on + strandat 4223.628 kb on - strandat 4223.628 kb on - strandat 4223.633 kb on + strandat 4223.634 kb on - strandat 4223.634 kb on - strandat 4223.727 kb on - strandat 4223.727 kb on - strandat 4223.767 kb on - strandat 4223.844 kb on + strand, within CA264_18160at 4223.844 kb on + strand, within CA264_18160at 4223.844 kb on + strand, within CA264_18160at 4223.853 kb on + strand, within CA264_18160at 4223.854 kb on - strand, within CA264_18160at 4223.854 kb on - strand, within CA264_18160at 4223.854 kb on - strand, within CA264_18160at 4223.854 kb on - strand, within CA264_18160at 4223.854 kb on - strand, within CA264_18160at 4223.908 kb on + strand, within CA264_18160at 4223.909 kb on - strand, within CA264_18160at 4223.909 kb on - strand, within CA264_18160at 4223.909 kb on - strand, within CA264_18160at 4223.909 kb on - strand, within CA264_18160at 4223.911 kb on - strand, within CA264_18160at 4223.911 kb on - strand, within CA264_18160at 4223.911 kb on - strand, within CA264_18160at 4223.911 kb on - strand, within CA264_18160at 4223.911 kb on - strand, within CA264_18160at 4223.911 kb on - strand, within CA264_18160at 4223.944 kb on - strand, within CA264_18160at 4223.944 kb on - strand, within CA264_18160at 4224.046 kb on - strand, within CA264_18160at 4224.095 kb on - strand, within CA264_18160at 4224.174 kb on - strand, within CA264_18160at 4224.180 kb on + strand, within CA264_18160at 4224.321 kb on + strand, within CA264_18160at 4224.325 kb on - strand, within CA264_18160at 4224.326 kb on + strand, within CA264_18160at 4224.411 kb on + strand, within CA264_18160at 4224.442 kb on + strand, within CA264_18160at 4224.443 kb on - strand, within CA264_18160at 4224.496 kb on - strand, within CA264_18160at 4224.496 kb on - strand, within CA264_18160at 4224.522 kb on + strand, within CA264_18160at 4224.560 kb on - strandat 4224.561 kb on + strandat 4224.594 kb on - strandat 4224.775 kb on - strand, within CA264_18165at 4224.815 kb on + strand, within CA264_18165at 4224.828 kb on - strand, within CA264_18165at 4224.841 kb on - strand, within CA264_18165at 4224.901 kb on + strand, within CA264_18165at 4224.948 kb on + strand, within CA264_18165at 4224.949 kb on - strand, within CA264_18165at 4225.002 kb on - strand, within CA264_18165at 4225.021 kb on - strand, within CA264_18165at 4225.047 kb on + strand, within CA264_18165at 4225.094 kb on + strand, within CA264_18165at 4225.125 kb on + strand, within CA264_18165at 4225.125 kb on + strand, within CA264_18165at 4225.126 kb on - strand, within CA264_18165at 4225.126 kb on - strand, within CA264_18165at 4225.168 kb on - strand, within CA264_18165at 4225.275 kb on + strand, within CA264_18165at 4225.375 kb on - strand, within CA264_18165at 4225.439 kb on - strand, within CA264_18165at 4225.538 kb on - strandat 4225.612 kb on - strandat 4225.631 kb on - strandat 4225.631 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0005 mg/ml
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4,222,853 - CA264_18155 0.53 +0.1
4,222,925 + CA264_18155 0.57 +0.3
4,222,927 + CA264_18155 0.58 -1.4
4,222,972 + -0.3
4,223,007 + CA264_18155 0.63 +0.0
4,223,024 + CA264_18155 0.64 +0.4
4,223,025 - CA264_18155 0.64 -1.7
4,223,036 + CA264_18155 0.64 -0.7
4,223,037 - CA264_18155 0.65 -0.4
4,223,080 + CA264_18155 0.67 +1.1
4,223,097 - CA264_18155 0.68 +1.2
4,223,114 - CA264_18155 0.69 -0.3
4,223,125 + CA264_18155 0.70 -1.4
4,223,125 + CA264_18155 0.70 +1.3
4,223,154 - CA264_18155 0.72 -0.2
4,223,202 + CA264_18155 0.75 -0.3
4,223,215 + CA264_18155 0.76 -0.3
4,223,236 + CA264_18155 0.77 -0.1
4,223,237 - CA264_18155 0.77 +0.7
4,223,237 - CA264_18155 0.77 +0.6
4,223,278 - CA264_18155 0.80 +0.1
4,223,305 + CA264_18155 0.82 +0.4
4,223,319 - CA264_18155 0.82 -0.3
4,223,470 + -1.6
4,223,605 + -0.8
4,223,605 + +0.1
4,223,605 + +0.1
4,223,605 + -0.8
4,223,606 - +0.1
4,223,606 - -1.3
4,223,609 + -0.3
4,223,609 + +0.2
4,223,627 + +0.2
4,223,628 - +0.5
4,223,628 - -0.1
4,223,633 + -0.4
4,223,634 - +1.3
4,223,634 - +0.1
4,223,727 - +1.3
4,223,727 - -0.1
4,223,767 - +0.3
4,223,844 + CA264_18160 0.13 +1.3
4,223,844 + CA264_18160 0.13 -1.0
4,223,844 + CA264_18160 0.13 -0.4
4,223,853 + CA264_18160 0.14 +0.4
4,223,854 - CA264_18160 0.14 -0.2
4,223,854 - CA264_18160 0.14 +0.7
4,223,854 - CA264_18160 0.14 +2.1
4,223,854 - CA264_18160 0.14 -0.1
4,223,854 - CA264_18160 0.14 -0.1
4,223,908 + CA264_18160 0.20 +1.3
4,223,909 - CA264_18160 0.20 -0.7
4,223,909 - CA264_18160 0.20 -0.6
4,223,909 - CA264_18160 0.20 +0.1
4,223,909 - CA264_18160 0.20 -0.3
4,223,911 - CA264_18160 0.20 +0.4
4,223,911 - CA264_18160 0.20 +1.3
4,223,911 - CA264_18160 0.20 +0.0
4,223,911 - CA264_18160 0.20 -0.3
4,223,911 - CA264_18160 0.20 +0.9
4,223,911 - CA264_18160 0.20 +1.1
4,223,944 - CA264_18160 0.24 +0.7
4,223,944 - CA264_18160 0.24 +1.7
4,224,046 - CA264_18160 0.35 +0.7
4,224,095 - CA264_18160 0.41 +0.7
4,224,174 - CA264_18160 0.49 -0.7
4,224,180 + CA264_18160 0.50 +2.9
4,224,321 + CA264_18160 0.66 -0.2
4,224,325 - CA264_18160 0.66 +0.1
4,224,326 + CA264_18160 0.66 +0.8
4,224,411 + CA264_18160 0.75 +1.3
4,224,442 + CA264_18160 0.79 -0.0
4,224,443 - CA264_18160 0.79 +1.6
4,224,496 - CA264_18160 0.85 -0.0
4,224,496 - CA264_18160 0.85 +0.4
4,224,522 + CA264_18160 0.88 +0.2
4,224,560 - +0.7
4,224,561 + -0.3
4,224,594 - +0.8
4,224,775 - CA264_18165 0.15 -0.1
4,224,815 + CA264_18165 0.19 +0.4
4,224,828 - CA264_18165 0.20 -0.5
4,224,841 - CA264_18165 0.22 -0.7
4,224,901 + CA264_18165 0.28 -1.7
4,224,948 + CA264_18165 0.33 +0.1
4,224,949 - CA264_18165 0.33 -0.7
4,225,002 - CA264_18165 0.38 +0.9
4,225,021 - CA264_18165 0.40 +0.3
4,225,047 + CA264_18165 0.43 +0.7
4,225,094 + CA264_18165 0.48 +0.9
4,225,125 + CA264_18165 0.51 +1.7
4,225,125 + CA264_18165 0.51 +1.7
4,225,126 - CA264_18165 0.51 -0.3
4,225,126 - CA264_18165 0.51 +0.7
4,225,168 - CA264_18165 0.55 +0.3
4,225,275 + CA264_18165 0.66 +0.1
4,225,375 - CA264_18165 0.77 -0.8
4,225,439 - CA264_18165 0.83 +0.2
4,225,538 - -0.7
4,225,612 - +0.5
4,225,631 - -0.5
4,225,631 - -0.1

Or see this region's nucleotide sequence