Experiment: m.b. Chloramphenicol 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_16565 and CA264_16570 are separated by 75 nucleotides CA264_16570 and CA264_16575 are separated by 630 nucleotides
CA264_16565: CA264_16565 - hypothetical protein, at 3,852,190 to 3,852,621
_16565
CA264_16570: CA264_16570 - hypothetical protein, at 3,852,697 to 3,853,254
_16570
CA264_16575: CA264_16575 - hypothetical protein, at 3,853,885 to 3,854,283
_16575
Position (kb)
3852
3853
3854 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3851.746 kb on + strand at 3851.746 kb on + strand at 3851.747 kb on - strand at 3851.747 kb on - strand at 3851.908 kb on - strand at 3851.925 kb on + strand at 3851.925 kb on + strand at 3851.926 kb on - strand at 3851.973 kb on + strand at 3851.984 kb on - strand at 3851.985 kb on + strand at 3851.985 kb on + strand at 3852.151 kb on + strand at 3852.152 kb on - strand at 3852.152 kb on - strand at 3852.154 kb on - strand at 3852.154 kb on - strand at 3852.157 kb on - strand at 3852.210 kb on + strand at 3852.210 kb on + strand at 3852.227 kb on + strand at 3852.243 kb on - strand, within CA264_16565 at 3852.285 kb on - strand, within CA264_16565 at 3852.285 kb on - strand, within CA264_16565 at 3852.285 kb on - strand, within CA264_16565 at 3852.292 kb on - strand, within CA264_16565 at 3852.500 kb on - strand, within CA264_16565 at 3852.547 kb on - strand, within CA264_16565 at 3852.547 kb on - strand, within CA264_16565 at 3852.572 kb on + strand, within CA264_16565 at 3852.593 kb on - strand at 3852.720 kb on + strand at 3852.814 kb on - strand, within CA264_16570 at 3852.929 kb on + strand, within CA264_16570 at 3852.930 kb on - strand, within CA264_16570 at 3853.011 kb on - strand, within CA264_16570 at 3853.052 kb on + strand, within CA264_16570 at 3853.052 kb on + strand, within CA264_16570 at 3853.070 kb on + strand, within CA264_16570 at 3853.165 kb on + strand, within CA264_16570 at 3853.165 kb on + strand, within CA264_16570 at 3853.255 kb on - strand at 3853.259 kb on + strand at 3853.259 kb on + strand at 3853.260 kb on - strand at 3853.320 kb on + strand at 3853.359 kb on + strand at 3853.361 kb on + strand at 3853.361 kb on + strand at 3853.362 kb on - strand at 3853.365 kb on + strand at 3853.365 kb on + strand at 3853.365 kb on + strand at 3853.365 kb on + strand at 3853.366 kb on - strand at 3853.367 kb on + strand at 3853.367 kb on + strand at 3853.368 kb on - strand at 3853.400 kb on + strand at 3853.490 kb on + strand at 3853.490 kb on + strand at 3853.491 kb on - strand at 3853.496 kb on - strand at 3853.565 kb on + strand at 3853.565 kb on + strand at 3853.566 kb on - strand at 3853.640 kb on - strand at 3853.653 kb on + strand at 3853.653 kb on + strand at 3853.653 kb on + strand at 3853.654 kb on - strand at 3853.779 kb on + strand at 3853.848 kb on + strand at 3853.918 kb on + strand at 3853.982 kb on - strand, within CA264_16575 at 3853.982 kb on - strand, within CA264_16575 at 3854.000 kb on + strand, within CA264_16575 at 3854.000 kb on + strand, within CA264_16575 at 3854.031 kb on + strand, within CA264_16575 at 3854.158 kb on + strand, within CA264_16575 at 3854.232 kb on - strand, within CA264_16575
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0005 mg/ml remove 3,851,746 + -0.4 3,851,746 + +0.5 3,851,747 - +0.1 3,851,747 - -2.1 3,851,908 - +0.3 3,851,925 + +1.4 3,851,925 + -0.7 3,851,926 - +1.3 3,851,973 + -0.1 3,851,984 - +0.6 3,851,985 + -0.8 3,851,985 + +0.3 3,852,151 + +0.3 3,852,152 - +0.4 3,852,152 - +0.2 3,852,154 - +0.3 3,852,154 - +0.6 3,852,157 - +0.0 3,852,210 + -1.1 3,852,210 + +0.4 3,852,227 + +0.1 3,852,243 - CA264_16565 0.12 -1.7 3,852,285 - CA264_16565 0.22 -0.4 3,852,285 - CA264_16565 0.22 +0.1 3,852,285 - CA264_16565 0.22 -1.5 3,852,292 - CA264_16565 0.24 +0.4 3,852,500 - CA264_16565 0.72 +1.7 3,852,547 - CA264_16565 0.83 +0.3 3,852,547 - CA264_16565 0.83 +2.7 3,852,572 + CA264_16565 0.88 +0.0 3,852,593 - -0.3 3,852,720 + +1.3 3,852,814 - CA264_16570 0.21 -0.1 3,852,929 + CA264_16570 0.42 +1.3 3,852,930 - CA264_16570 0.42 +0.5 3,853,011 - CA264_16570 0.56 -0.4 3,853,052 + CA264_16570 0.64 +1.3 3,853,052 + CA264_16570 0.64 +0.8 3,853,070 + CA264_16570 0.67 -1.0 3,853,165 + CA264_16570 0.84 +0.3 3,853,165 + CA264_16570 0.84 -1.0 3,853,255 - +0.0 3,853,259 + +0.3 3,853,259 + +0.7 3,853,260 - -1.8 3,853,320 + +0.3 3,853,359 + +0.6 3,853,361 + -0.3 3,853,361 + +0.3 3,853,362 - -0.7 3,853,365 + +0.1 3,853,365 + -0.8 3,853,365 + +0.3 3,853,365 + -0.2 3,853,366 - -0.7 3,853,367 + -0.7 3,853,367 + -1.2 3,853,368 - -1.1 3,853,400 + +1.3 3,853,490 + -0.2 3,853,490 + +0.8 3,853,491 - +0.9 3,853,496 - -0.4 3,853,565 + +0.0 3,853,565 + -0.7 3,853,566 - +0.1 3,853,640 - -0.3 3,853,653 + -0.3 3,853,653 + +1.7 3,853,653 + +0.5 3,853,654 - +2.9 3,853,779 + -0.5 3,853,848 + +0.8 3,853,918 + +1.1 3,853,982 - CA264_16575 0.24 +1.3 3,853,982 - CA264_16575 0.24 -0.2 3,854,000 + CA264_16575 0.29 +0.0 3,854,000 + CA264_16575 0.29 +0.0 3,854,031 + CA264_16575 0.37 -0.2 3,854,158 + CA264_16575 0.68 +0.2 3,854,232 - CA264_16575 0.87 -1.7
Or see this region's nucleotide sequence