Experiment: m.b. Chloramphenicol 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_14905 and CA264_14910 are separated by 90 nucleotides CA264_14910 and CA264_14915 are separated by 89 nucleotides
CA264_14905: CA264_14905 - hypothetical protein, at 3,504,510 to 3,505,532
_14905
CA264_14910: CA264_14910 - 30S ribosomal protein THX, at 3,505,623 to 3,505,748
_14910
CA264_14915: CA264_14915 - MFS transporter, at 3,505,838 to 3,507,097
_14915
Position (kb)
3505
3506 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3504.623 kb on + strand, within CA264_14905 at 3504.676 kb on + strand, within CA264_14905 at 3504.723 kb on - strand, within CA264_14905 at 3504.723 kb on - strand, within CA264_14905 at 3505.191 kb on + strand, within CA264_14905 at 3505.329 kb on - strand, within CA264_14905 at 3505.333 kb on + strand, within CA264_14905 at 3505.334 kb on - strand, within CA264_14905 at 3505.334 kb on - strand, within CA264_14905 at 3505.334 kb on - strand, within CA264_14905 at 3505.334 kb on - strand, within CA264_14905 at 3505.344 kb on + strand, within CA264_14905 at 3505.360 kb on + strand, within CA264_14905 at 3505.366 kb on + strand, within CA264_14905 at 3505.367 kb on - strand, within CA264_14905 at 3505.481 kb on - strand at 3505.481 kb on - strand at 3505.565 kb on + strand at 3505.565 kb on + strand at 3505.609 kb on + strand at 3505.609 kb on + strand at 3505.638 kb on - strand, within CA264_14910 at 3505.701 kb on + strand, within CA264_14910 at 3505.722 kb on - strand, within CA264_14910 at 3505.879 kb on + strand at 3505.890 kb on - strand at 3505.898 kb on - strand at 3505.992 kb on - strand, within CA264_14915 at 3506.049 kb on + strand, within CA264_14915 at 3506.050 kb on - strand, within CA264_14915 at 3506.239 kb on - strand, within CA264_14915 at 3506.399 kb on - strand, within CA264_14915 at 3506.403 kb on - strand, within CA264_14915 at 3506.403 kb on - strand, within CA264_14915 at 3506.503 kb on + strand, within CA264_14915 at 3506.504 kb on - strand, within CA264_14915 at 3506.546 kb on - strand, within CA264_14915 at 3506.547 kb on + strand, within CA264_14915 at 3506.548 kb on - strand, within CA264_14915 at 3506.548 kb on - strand, within CA264_14915 at 3506.548 kb on - strand, within CA264_14915 at 3506.557 kb on + strand, within CA264_14915 at 3506.566 kb on - strand, within CA264_14915 at 3506.566 kb on - strand, within CA264_14915 at 3506.639 kb on - strand, within CA264_14915 at 3506.652 kb on + strand, within CA264_14915 at 3506.665 kb on + strand, within CA264_14915 at 3506.746 kb on - strand, within CA264_14915
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0005 mg/ml remove 3,504,623 + CA264_14905 0.11 +2.2 3,504,676 + CA264_14905 0.16 -1.1 3,504,723 - CA264_14905 0.21 +1.2 3,504,723 - CA264_14905 0.21 +0.2 3,505,191 + CA264_14905 0.67 +1.3 3,505,329 - CA264_14905 0.80 -0.1 3,505,333 + CA264_14905 0.80 +0.0 3,505,334 - CA264_14905 0.81 +2.2 3,505,334 - CA264_14905 0.81 +0.0 3,505,334 - CA264_14905 0.81 -0.1 3,505,334 - CA264_14905 0.81 -0.1 3,505,344 + CA264_14905 0.82 -0.4 3,505,360 + CA264_14905 0.83 -0.8 3,505,366 + CA264_14905 0.84 +2.2 3,505,367 - CA264_14905 0.84 +1.8 3,505,481 - -0.8 3,505,481 - +1.2 3,505,565 + +0.4 3,505,565 + +0.0 3,505,609 + -0.2 3,505,609 + -0.9 3,505,638 - CA264_14910 0.12 -0.1 3,505,701 + CA264_14910 0.62 +1.0 3,505,722 - CA264_14910 0.79 +0.9 3,505,879 + +0.8 3,505,890 - -0.1 3,505,898 - +0.4 3,505,992 - CA264_14915 0.12 +0.2 3,506,049 + CA264_14915 0.17 -0.3 3,506,050 - CA264_14915 0.17 +0.1 3,506,239 - CA264_14915 0.32 +0.4 3,506,399 - CA264_14915 0.45 -0.2 3,506,403 - CA264_14915 0.45 -0.0 3,506,403 - CA264_14915 0.45 +0.3 3,506,503 + CA264_14915 0.53 -0.7 3,506,504 - CA264_14915 0.53 +0.6 3,506,546 - CA264_14915 0.56 +0.4 3,506,547 + CA264_14915 0.56 +0.8 3,506,548 - CA264_14915 0.56 +0.1 3,506,548 - CA264_14915 0.56 +0.2 3,506,548 - CA264_14915 0.56 +0.4 3,506,557 + CA264_14915 0.57 -0.5 3,506,566 - CA264_14915 0.58 +1.2 3,506,566 - CA264_14915 0.58 +0.3 3,506,639 - CA264_14915 0.64 -0.3 3,506,652 + CA264_14915 0.65 -0.7 3,506,665 + CA264_14915 0.66 -1.8 3,506,746 - CA264_14915 0.72 +2.8
Or see this region's nucleotide sequence