Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10045

Experiment: m.b. Chloramphenicol 0.0005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_10035 and CA264_10040 are separated by 16 nucleotidesCA264_10040 and CA264_10045 are separated by 82 nucleotidesCA264_10045 and CA264_10050 are separated by 420 nucleotidesCA264_10050 and CA264_10055 are separated by 53 nucleotides CA264_10035: CA264_10035 - hypothetical protein, at 2,331,289 to 2,331,696 _10035 CA264_10040: CA264_10040 - 5-hydroxyisourate hydrolase, at 2,331,713 to 2,332,120 _10040 CA264_10045: CA264_10045 - hypothetical protein, at 2,332,203 to 2,332,505 _10045 CA264_10050: CA264_10050 - hypothetical protein, at 2,332,926 to 2,333,354 _10050 CA264_10055: CA264_10055 - hypothetical protein, at 2,333,408 to 2,334,052 _10055 Position (kb) 2332 2333Strain fitness (log2 ratio) -2 -1 0 1 2at 2331.231 kb on + strandat 2331.327 kb on - strandat 2331.345 kb on + strand, within CA264_10035at 2331.427 kb on + strand, within CA264_10035at 2331.455 kb on + strand, within CA264_10035at 2331.684 kb on - strandat 2331.688 kb on - strandat 2331.688 kb on - strandat 2331.688 kb on - strandat 2331.962 kb on + strand, within CA264_10040at 2331.981 kb on + strand, within CA264_10040at 2332.230 kb on + strandat 2332.440 kb on + strand, within CA264_10045at 2332.440 kb on + strand, within CA264_10045at 2332.878 kb on + strandat 2332.878 kb on + strandat 2332.881 kb on + strandat 2332.881 kb on + strandat 2332.897 kb on - strandat 2332.901 kb on - strandat 2332.925 kb on + strandat 2332.926 kb on - strandat 2333.064 kb on - strand, within CA264_10050at 2333.064 kb on - strand, within CA264_10050at 2333.069 kb on - strand, within CA264_10050at 2333.069 kb on - strand, within CA264_10050at 2333.185 kb on - strand, within CA264_10050at 2333.187 kb on + strand, within CA264_10050at 2333.187 kb on + strand, within CA264_10050at 2333.188 kb on - strand, within CA264_10050at 2333.192 kb on + strand, within CA264_10050at 2333.315 kb on + strandat 2333.315 kb on + strandat 2333.395 kb on + strandat 2333.395 kb on + strandat 2333.407 kb on + strandat 2333.407 kb on + strandat 2333.407 kb on + strandat 2333.407 kb on + strandat 2333.407 kb on + strandat 2333.408 kb on - strandat 2333.416 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0005 mg/ml
remove
2,331,231 + -2.0
2,331,327 - -0.4
2,331,345 + CA264_10035 0.14 +2.6
2,331,427 + CA264_10035 0.34 -0.2
2,331,455 + CA264_10035 0.41 -0.0
2,331,684 - -0.1
2,331,688 - +0.8
2,331,688 - -0.2
2,331,688 - -0.0
2,331,962 + CA264_10040 0.61 -0.2
2,331,981 + CA264_10040 0.66 -0.8
2,332,230 + -1.2
2,332,440 + CA264_10045 0.78 +0.6
2,332,440 + CA264_10045 0.78 +1.1
2,332,878 + -0.6
2,332,878 + -1.0
2,332,881 + +0.8
2,332,881 + +0.1
2,332,897 - +0.0
2,332,901 - +0.3
2,332,925 + +1.2
2,332,926 - -0.2
2,333,064 - CA264_10050 0.32 +1.2
2,333,064 - CA264_10050 0.32 +0.2
2,333,069 - CA264_10050 0.33 -0.2
2,333,069 - CA264_10050 0.33 +1.2
2,333,185 - CA264_10050 0.60 +0.2
2,333,187 + CA264_10050 0.61 +1.0
2,333,187 + CA264_10050 0.61 +0.7
2,333,188 - CA264_10050 0.61 +1.2
2,333,192 + CA264_10050 0.62 -0.2
2,333,315 + +0.0
2,333,315 + +0.1
2,333,395 + +0.8
2,333,395 + -0.1
2,333,407 + +0.3
2,333,407 + +0.5
2,333,407 + +0.3
2,333,407 + -0.4
2,333,407 + +0.0
2,333,408 - +0.2
2,333,416 + +0.8

Or see this region's nucleotide sequence