Experiment: m.b. Chloramphenicol 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09215 and CA264_09220 overlap by 4 nucleotides CA264_09220 and CA264_09225 are separated by 201 nucleotides CA264_09225 and CA264_09230 are separated by 3 nucleotides
CA264_09215: CA264_09215 - ferredoxin--NADP(+) reductase, at 2,157,577 to 2,158,593
_09215
CA264_09220: CA264_09220 - ferredoxin, at 2,158,590 to 2,158,913
_09220
CA264_09225: CA264_09225 - Fe-S oxidoreductase, at 2,159,115 to 2,159,855
_09225
CA264_09230: CA264_09230 - hydroxymethylglutaryl-CoA lyase, at 2,159,859 to 2,160,704
_09230
Position (kb)
2159
2160 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2158.122 kb on - strand, within CA264_09215 at 2158.122 kb on - strand, within CA264_09215 at 2158.173 kb on + strand, within CA264_09215 at 2158.173 kb on + strand, within CA264_09215 at 2158.173 kb on + strand, within CA264_09215 at 2158.173 kb on + strand, within CA264_09215 at 2158.174 kb on - strand, within CA264_09215 at 2158.174 kb on - strand, within CA264_09215 at 2158.174 kb on - strand, within CA264_09215 at 2158.210 kb on - strand, within CA264_09215 at 2158.216 kb on - strand, within CA264_09215 at 2158.216 kb on - strand, within CA264_09215 at 2158.216 kb on - strand, within CA264_09215 at 2158.220 kb on + strand, within CA264_09215 at 2158.220 kb on + strand, within CA264_09215 at 2158.221 kb on - strand, within CA264_09215 at 2158.268 kb on + strand, within CA264_09215 at 2158.402 kb on + strand, within CA264_09215 at 2158.426 kb on + strand, within CA264_09215 at 2158.427 kb on - strand, within CA264_09215 at 2158.427 kb on - strand, within CA264_09215 at 2158.427 kb on - strand, within CA264_09215 at 2158.450 kb on + strand, within CA264_09215 at 2158.451 kb on - strand, within CA264_09215 at 2158.472 kb on + strand, within CA264_09215 at 2158.517 kb on - strand at 2158.521 kb on + strand at 2158.522 kb on - strand at 2158.522 kb on - strand at 2158.528 kb on + strand at 2158.536 kb on + strand at 2158.551 kb on - strand at 2158.584 kb on - strand at 2158.603 kb on + strand at 2158.604 kb on - strand at 2158.609 kb on + strand at 2158.609 kb on + strand at 2158.610 kb on - strand at 2158.610 kb on - strand at 2158.611 kb on + strand at 2158.611 kb on + strand at 2158.611 kb on + strand at 2158.611 kb on + strand at 2158.676 kb on + strand, within CA264_09220 at 2158.754 kb on - strand, within CA264_09220 at 2158.803 kb on + strand, within CA264_09220 at 2158.803 kb on + strand, within CA264_09220 at 2158.803 kb on + strand, within CA264_09220 at 2158.804 kb on - strand, within CA264_09220 at 2158.805 kb on + strand, within CA264_09220 at 2158.806 kb on - strand, within CA264_09220 at 2158.806 kb on - strand, within CA264_09220 at 2158.899 kb on - strand at 2159.020 kb on + strand at 2159.021 kb on - strand at 2159.024 kb on - strand at 2159.060 kb on + strand at 2159.061 kb on - strand at 2159.084 kb on + strand at 2159.084 kb on + strand at 2159.110 kb on + strand at 2159.110 kb on + strand at 2159.111 kb on - strand at 2159.113 kb on - strand at 2159.113 kb on - strand at 2159.113 kb on - strand at 2159.113 kb on - strand at 2159.182 kb on + strand at 2159.228 kb on - strand, within CA264_09225 at 2159.256 kb on + strand, within CA264_09225 at 2159.274 kb on - strand, within CA264_09225 at 2159.285 kb on + strand, within CA264_09225 at 2159.286 kb on - strand, within CA264_09225 at 2159.286 kb on - strand, within CA264_09225 at 2159.286 kb on - strand, within CA264_09225 at 2159.310 kb on - strand, within CA264_09225 at 2159.310 kb on - strand, within CA264_09225 at 2159.376 kb on + strand, within CA264_09225 at 2159.377 kb on - strand, within CA264_09225 at 2159.438 kb on - strand, within CA264_09225 at 2159.444 kb on - strand, within CA264_09225 at 2159.477 kb on + strand, within CA264_09225 at 2159.478 kb on - strand, within CA264_09225 at 2159.578 kb on + strand, within CA264_09225 at 2159.626 kb on + strand, within CA264_09225 at 2159.664 kb on - strand, within CA264_09225 at 2159.739 kb on - strand, within CA264_09225 at 2159.740 kb on + strand, within CA264_09225 at 2159.831 kb on + strand at 2159.839 kb on - strand at 2159.855 kb on + strand at 2159.855 kb on + strand at 2159.856 kb on - strand at 2159.863 kb on - strand at 2159.925 kb on + strand at 2160.093 kb on - strand, within CA264_09230 at 2160.093 kb on - strand, within CA264_09230 at 2160.271 kb on + strand, within CA264_09230 at 2160.298 kb on + strand, within CA264_09230 at 2160.298 kb on + strand, within CA264_09230 at 2160.298 kb on + strand, within CA264_09230 at 2160.299 kb on - strand, within CA264_09230 at 2160.302 kb on + strand, within CA264_09230 at 2160.627 kb on - strand at 2160.647 kb on + strand at 2160.651 kb on + strand at 2160.654 kb on - strand at 2160.812 kb on - strand at 2160.819 kb on - strand at 2160.823 kb on + strand at 2160.835 kb on + strand at 2160.835 kb on + strand at 2160.836 kb on - strand at 2160.837 kb on + strand at 2160.845 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0005 mg/ml remove 2,158,122 - CA264_09215 0.54 -0.0 2,158,122 - CA264_09215 0.54 -0.4 2,158,173 + CA264_09215 0.59 +0.0 2,158,173 + CA264_09215 0.59 +0.8 2,158,173 + CA264_09215 0.59 +0.2 2,158,173 + CA264_09215 0.59 +0.2 2,158,174 - CA264_09215 0.59 +0.2 2,158,174 - CA264_09215 0.59 +0.7 2,158,174 - CA264_09215 0.59 +0.4 2,158,210 - CA264_09215 0.62 +0.1 2,158,216 - CA264_09215 0.63 +0.2 2,158,216 - CA264_09215 0.63 -0.2 2,158,216 - CA264_09215 0.63 +0.5 2,158,220 + CA264_09215 0.63 -0.4 2,158,220 + CA264_09215 0.63 +0.1 2,158,221 - CA264_09215 0.63 -0.0 2,158,268 + CA264_09215 0.68 -0.2 2,158,402 + CA264_09215 0.81 -0.6 2,158,426 + CA264_09215 0.83 +0.7 2,158,427 - CA264_09215 0.84 +1.2 2,158,427 - CA264_09215 0.84 +0.7 2,158,427 - CA264_09215 0.84 +0.2 2,158,450 + CA264_09215 0.86 +0.5 2,158,451 - CA264_09215 0.86 -1.8 2,158,472 + CA264_09215 0.88 +0.0 2,158,517 - +0.1 2,158,521 + -0.4 2,158,522 - +1.4 2,158,522 - +0.4 2,158,528 + +0.2 2,158,536 + +0.1 2,158,551 - +0.6 2,158,584 - -0.3 2,158,603 + +0.1 2,158,604 - +0.7 2,158,609 + -0.7 2,158,609 + -0.6 2,158,610 - +0.1 2,158,610 - -0.3 2,158,611 + -0.1 2,158,611 + +0.1 2,158,611 + +1.4 2,158,611 + -0.6 2,158,676 + CA264_09220 0.27 +0.8 2,158,754 - CA264_09220 0.51 +0.2 2,158,803 + CA264_09220 0.66 +0.1 2,158,803 + CA264_09220 0.66 -0.4 2,158,803 + CA264_09220 0.66 -0.2 2,158,804 - CA264_09220 0.66 +0.4 2,158,805 + CA264_09220 0.66 +0.1 2,158,806 - CA264_09220 0.67 +0.3 2,158,806 - CA264_09220 0.67 -0.3 2,158,899 - -1.6 2,159,020 + -0.1 2,159,021 - -0.2 2,159,024 - +0.8 2,159,060 + -0.0 2,159,061 - -0.1 2,159,084 + -0.4 2,159,084 + -0.1 2,159,110 + -0.6 2,159,110 + +0.3 2,159,111 - +1.8 2,159,113 - +0.8 2,159,113 - +0.4 2,159,113 - -0.5 2,159,113 - -0.4 2,159,182 + -0.7 2,159,228 - CA264_09225 0.15 +0.7 2,159,256 + CA264_09225 0.19 +0.1 2,159,274 - CA264_09225 0.21 +0.8 2,159,285 + CA264_09225 0.23 +0.2 2,159,286 - CA264_09225 0.23 -0.4 2,159,286 - CA264_09225 0.23 -0.6 2,159,286 - CA264_09225 0.23 -0.8 2,159,310 - CA264_09225 0.26 +0.8 2,159,310 - CA264_09225 0.26 -0.2 2,159,376 + CA264_09225 0.35 -0.6 2,159,377 - CA264_09225 0.35 -0.3 2,159,438 - CA264_09225 0.44 -0.2 2,159,444 - CA264_09225 0.44 -0.1 2,159,477 + CA264_09225 0.49 -3.3 2,159,478 - CA264_09225 0.49 +0.1 2,159,578 + CA264_09225 0.62 -0.6 2,159,626 + CA264_09225 0.69 -1.5 2,159,664 - CA264_09225 0.74 -1.4 2,159,739 - CA264_09225 0.84 -0.2 2,159,740 + CA264_09225 0.84 -0.7 2,159,831 + -0.8 2,159,839 - -1.0 2,159,855 + -0.8 2,159,855 + +0.1 2,159,856 - +0.5 2,159,863 - +0.0 2,159,925 + -1.2 2,160,093 - CA264_09230 0.28 -0.7 2,160,093 - CA264_09230 0.28 +1.1 2,160,271 + CA264_09230 0.49 +1.8 2,160,298 + CA264_09230 0.52 -0.5 2,160,298 + CA264_09230 0.52 +0.5 2,160,298 + CA264_09230 0.52 -1.4 2,160,299 - CA264_09230 0.52 +2.8 2,160,302 + CA264_09230 0.52 -1.8 2,160,627 - -0.2 2,160,647 + -1.7 2,160,651 + +0.8 2,160,654 - -0.8 2,160,812 - -1.0 2,160,819 - -2.5 2,160,823 + -1.0 2,160,835 + -0.0 2,160,835 + +0.1 2,160,836 - +0.5 2,160,837 + +0.7 2,160,845 + -0.4
Or see this region's nucleotide sequence