Experiment: m.b. Chloramphenicol 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02835 and CA264_02840 are separated by 77 nucleotides CA264_02840 and CA264_02845 are separated by 490 nucleotides
CA264_02835: CA264_02835 - rhomboid family intramembrane serine protease, at 651,462 to 652,262
_02835
CA264_02840: CA264_02840 - hypothetical protein, at 652,340 to 653,098
_02840
CA264_02845: CA264_02845 - hypothetical protein, at 653,589 to 654,098
_02845
Position (kb) 652
653
654 Strain fitness (log2 ratio) -2
-1
0
1 at 651.377 kb on + strand at 651.377 kb on + strand at 651.378 kb on - strand at 651.378 kb on - strand at 651.383 kb on - strand at 651.397 kb on - strand at 651.438 kb on - strand at 651.455 kb on + strand at 651.455 kb on + strand at 651.456 kb on - strand at 651.462 kb on - strand at 651.462 kb on - strand at 651.492 kb on + strand at 651.493 kb on - strand at 651.493 kb on - strand at 651.780 kb on + strand, within CA264_02835 at 651.809 kb on + strand, within CA264_02835 at 652.102 kb on + strand, within CA264_02835 at 652.103 kb on - strand, within CA264_02835 at 652.137 kb on + strand, within CA264_02835 at 652.137 kb on + strand, within CA264_02835 at 652.137 kb on + strand, within CA264_02835 at 652.140 kb on - strand, within CA264_02835 at 652.146 kb on + strand, within CA264_02835 at 652.146 kb on + strand, within CA264_02835 at 652.147 kb on - strand, within CA264_02835 at 652.179 kb on + strand, within CA264_02835 at 652.192 kb on - strand at 652.192 kb on - strand at 652.192 kb on - strand at 652.239 kb on - strand at 652.239 kb on - strand at 652.239 kb on - strand at 652.269 kb on + strand at 652.270 kb on - strand at 652.270 kb on - strand at 652.270 kb on - strand at 652.270 kb on - strand at 652.276 kb on + strand at 652.463 kb on - strand, within CA264_02840 at 652.463 kb on - strand, within CA264_02840 at 652.463 kb on - strand, within CA264_02840 at 652.477 kb on - strand, within CA264_02840 at 652.485 kb on - strand, within CA264_02840 at 652.485 kb on - strand, within CA264_02840 at 652.485 kb on - strand, within CA264_02840 at 652.485 kb on - strand, within CA264_02840 at 652.672 kb on + strand, within CA264_02840 at 652.675 kb on + strand, within CA264_02840 at 652.836 kb on - strand, within CA264_02840 at 652.937 kb on - strand, within CA264_02840 at 653.072 kb on + strand at 653.077 kb on + strand at 653.077 kb on + strand at 653.077 kb on + strand at 653.077 kb on + strand at 653.077 kb on + strand at 653.077 kb on + strand at 653.078 kb on - strand at 653.078 kb on - strand at 653.078 kb on - strand at 653.081 kb on + strand at 653.082 kb on - strand at 653.096 kb on + strand at 653.096 kb on + strand at 653.096 kb on + strand at 653.096 kb on + strand at 653.101 kb on - strand at 653.208 kb on - strand at 653.331 kb on + strand at 653.331 kb on + strand at 653.422 kb on + strand at 653.422 kb on + strand at 653.423 kb on - strand at 653.423 kb on - strand at 653.435 kb on - strand at 653.477 kb on - strand at 653.553 kb on - strand at 653.629 kb on + strand at 653.630 kb on - strand at 653.736 kb on + strand, within CA264_02845 at 653.788 kb on + strand, within CA264_02845 at 653.789 kb on - strand, within CA264_02845 at 653.790 kb on + strand, within CA264_02845 at 653.826 kb on + strand, within CA264_02845 at 653.827 kb on - strand, within CA264_02845 at 653.982 kb on + strand, within CA264_02845 at 654.025 kb on + strand, within CA264_02845
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0005 mg/ml remove 651,377 + -0.2 651,377 + -0.4 651,378 - +0.5 651,378 - +0.2 651,383 - -0.1 651,397 - -0.3 651,438 - -1.4 651,455 + +0.0 651,455 + -0.1 651,456 - -0.7 651,462 - -0.3 651,462 - +0.9 651,492 + -0.3 651,493 - +1.2 651,493 - +0.3 651,780 + CA264_02835 0.40 -0.5 651,809 + CA264_02835 0.43 -0.1 652,102 + CA264_02835 0.80 +0.7 652,103 - CA264_02835 0.80 -0.3 652,137 + CA264_02835 0.84 -0.2 652,137 + CA264_02835 0.84 +0.0 652,137 + CA264_02835 0.84 +0.2 652,140 - CA264_02835 0.85 +0.3 652,146 + CA264_02835 0.85 +0.8 652,146 + CA264_02835 0.85 +0.4 652,147 - CA264_02835 0.86 +0.4 652,179 + CA264_02835 0.90 -0.3 652,192 - +0.5 652,192 - -0.7 652,192 - -0.1 652,239 - -0.1 652,239 - +0.9 652,239 - -0.9 652,269 + -0.7 652,270 - +0.5 652,270 - -0.1 652,270 - +0.0 652,270 - -0.4 652,276 + +0.9 652,463 - CA264_02840 0.16 -0.5 652,463 - CA264_02840 0.16 -1.1 652,463 - CA264_02840 0.16 -0.7 652,477 - CA264_02840 0.18 -0.8 652,485 - CA264_02840 0.19 -0.0 652,485 - CA264_02840 0.19 -0.3 652,485 - CA264_02840 0.19 -0.1 652,485 - CA264_02840 0.19 -0.0 652,672 + CA264_02840 0.44 +0.5 652,675 + CA264_02840 0.44 -1.2 652,836 - CA264_02840 0.65 -0.3 652,937 - CA264_02840 0.79 -0.7 653,072 + +0.5 653,077 + -0.4 653,077 + +0.8 653,077 + -0.6 653,077 + -0.2 653,077 + -0.4 653,077 + -0.4 653,078 - -0.2 653,078 - +0.3 653,078 - -0.4 653,081 + -0.1 653,082 - -0.4 653,096 + -0.0 653,096 + -0.3 653,096 + -1.8 653,096 + -0.6 653,101 - +0.0 653,208 - -0.5 653,331 + +0.9 653,331 + -0.2 653,422 + +0.2 653,422 + -0.8 653,423 - -0.9 653,423 - +0.4 653,435 - +0.5 653,477 - -0.0 653,553 - -0.1 653,629 + +0.6 653,630 - -1.4 653,736 + CA264_02845 0.29 +0.1 653,788 + CA264_02845 0.39 +0.9 653,789 - CA264_02845 0.39 -0.8 653,790 + CA264_02845 0.39 -0.7 653,826 + CA264_02845 0.46 -0.8 653,827 - CA264_02845 0.47 -0.5 653,982 + CA264_02845 0.77 -1.0 654,025 + CA264_02845 0.85 -0.3
Or see this region's nucleotide sequence