Strain Fitness in Agrobacterium fabrum C58 around Atu6087

Experiment: Cellohexaose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6085 and Atu6086 are separated by 18 nucleotidesAtu6086 and Atu6087 are separated by 48 nucleotidesAtu6087 and Atu6088 overlap by 4 nucleotidesAtu6088 and Atu6089 are separated by 31 nucleotides Atu6085: Atu6085 - ABC transporter, substrate binding protein (nitrate/sulfonate), at 103,100 to 104,032 Atu6085 Atu6086: Atu6086 - ABC transporter, membrane spanning protein (nitrate/sulfonate), at 104,051 to 104,851 Atu6086 Atu6087: Atu6087 - ABC transporter, nucleotide binding/ATPase protein (nitrate/sulfonate), at 104,900 to 105,679 Atu6087 Atu6088: Atu6088 - transcriptional regulator, LysR family, at 105,676 to 106,623 Atu6088 Atu6089: Atu6089 - conserved hypothetical protein, at 106,655 to 107,842 Atu6089 Position (kb) 104 105 106Strain fitness (log2 ratio) -1 0 1 2 3at 103.901 kb on - strand, within Atu6085at 103.901 kb on - strand, within Atu6085at 103.901 kb on - strand, within Atu6085at 103.923 kb on - strand, within Atu6085at 103.948 kb on + strandat 103.948 kb on + strandat 103.948 kb on + strandat 103.956 kb on - strandat 103.956 kb on - strandat 103.956 kb on - strandat 103.956 kb on - strandat 103.956 kb on - strandat 103.985 kb on + strandat 103.986 kb on - strandat 104.013 kb on + strandat 104.013 kb on + strandat 104.013 kb on + strandat 104.021 kb on + strandat 104.080 kb on - strandat 104.232 kb on - strand, within Atu6086at 104.248 kb on + strand, within Atu6086at 104.375 kb on + strand, within Atu6086at 104.406 kb on + strand, within Atu6086at 104.494 kb on + strand, within Atu6086at 104.494 kb on + strand, within Atu6086at 104.501 kb on + strand, within Atu6086at 104.511 kb on + strand, within Atu6086at 104.530 kb on + strand, within Atu6086at 104.536 kb on + strand, within Atu6086at 104.561 kb on - strand, within Atu6086at 104.577 kb on - strand, within Atu6086at 104.601 kb on + strand, within Atu6086at 104.624 kb on + strand, within Atu6086at 104.647 kb on + strand, within Atu6086at 104.647 kb on + strand, within Atu6086at 104.655 kb on - strand, within Atu6086at 104.655 kb on - strand, within Atu6086at 104.655 kb on - strand, within Atu6086at 104.655 kb on - strand, within Atu6086at 104.801 kb on - strandat 104.815 kb on + strandat 104.823 kb on - strandat 104.864 kb on - strandat 104.867 kb on + strandat 104.885 kb on - strandat 104.950 kb on + strandat 105.116 kb on + strand, within Atu6087at 105.147 kb on - strand, within Atu6087at 105.218 kb on + strand, within Atu6087at 105.229 kb on + strand, within Atu6087at 105.229 kb on + strand, within Atu6087at 105.234 kb on + strand, within Atu6087at 105.237 kb on - strand, within Atu6087at 105.237 kb on - strand, within Atu6087at 105.237 kb on - strand, within Atu6087at 105.237 kb on - strand, within Atu6087at 105.239 kb on + strand, within Atu6087at 105.247 kb on - strand, within Atu6087at 105.320 kb on + strand, within Atu6087at 105.321 kb on + strand, within Atu6087at 105.333 kb on + strand, within Atu6087at 105.346 kb on - strand, within Atu6087at 105.346 kb on - strand, within Atu6087at 105.346 kb on - strand, within Atu6087at 105.351 kb on + strand, within Atu6087at 105.351 kb on + strand, within Atu6087at 105.351 kb on + strand, within Atu6087at 105.353 kb on + strand, within Atu6087at 105.353 kb on + strand, within Atu6087at 105.353 kb on + strand, within Atu6087at 105.353 kb on + strand, within Atu6087at 105.353 kb on + strand, within Atu6087at 105.353 kb on - strand, within Atu6087at 105.359 kb on - strand, within Atu6087at 105.359 kb on - strand, within Atu6087at 105.359 kb on - strand, within Atu6087at 105.359 kb on - strand, within Atu6087at 105.361 kb on - strand, within Atu6087at 105.361 kb on - strand, within Atu6087at 105.361 kb on - strand, within Atu6087at 105.389 kb on + strand, within Atu6087at 105.410 kb on - strand, within Atu6087at 105.415 kb on - strand, within Atu6087at 105.489 kb on + strand, within Atu6087at 105.533 kb on + strand, within Atu6087at 105.591 kb on + strand, within Atu6087at 105.591 kb on + strand, within Atu6087at 105.599 kb on - strand, within Atu6087at 105.612 kb on - strandat 105.635 kb on + strandat 105.643 kb on - strandat 105.643 kb on - strandat 105.719 kb on - strandat 105.719 kb on - strandat 105.719 kb on - strandat 105.801 kb on + strand, within Atu6088at 105.806 kb on + strand, within Atu6088at 105.806 kb on + strand, within Atu6088at 105.806 kb on + strand, within Atu6088at 105.806 kb on + strand, within Atu6088at 105.806 kb on + strand, within Atu6088at 105.806 kb on + strand, within Atu6088at 105.806 kb on + strand, within Atu6088at 105.806 kb on + strand, within Atu6088at 105.806 kb on + strand, within Atu6088at 105.806 kb on + strand, within Atu6088at 105.806 kb on - strand, within Atu6088at 105.809 kb on - strand, within Atu6088at 105.814 kb on - strand, within Atu6088at 105.814 kb on - strand, within Atu6088at 105.814 kb on - strand, within Atu6088at 105.814 kb on - strand, within Atu6088at 105.814 kb on - strand, within Atu6088at 105.814 kb on - strand, within Atu6088at 105.814 kb on - strand, within Atu6088at 105.814 kb on - strand, within Atu6088at 105.814 kb on - strand, within Atu6088at 105.827 kb on - strand, within Atu6088at 105.849 kb on - strand, within Atu6088at 105.859 kb on - strand, within Atu6088at 105.944 kb on - strand, within Atu6088at 105.971 kb on - strand, within Atu6088at 106.030 kb on - strand, within Atu6088at 106.032 kb on + strand, within Atu6088at 106.032 kb on + strand, within Atu6088at 106.040 kb on - strand, within Atu6088at 106.040 kb on - strand, within Atu6088at 106.053 kb on - strand, within Atu6088at 106.201 kb on + strand, within Atu6088at 106.201 kb on + strand, within Atu6088at 106.209 kb on - strand, within Atu6088at 106.209 kb on - strand, within Atu6088at 106.209 kb on - strand, within Atu6088at 106.231 kb on - strand, within Atu6088at 106.285 kb on - strand, within Atu6088at 106.390 kb on - strand, within Atu6088at 106.519 kb on + strand, within Atu6088at 106.560 kb on - strandat 106.562 kb on - strandat 106.562 kb on - strandat 106.562 kb on - strandat 106.573 kb on - strandat 106.605 kb on - strandat 106.609 kb on + strandat 106.616 kb on - strandat 106.617 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cellohexaose (C)
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103,901 - Atu6085 0.86 -0.5
103,901 - Atu6085 0.86 +0.1
103,901 - Atu6085 0.86 +0.3
103,923 - Atu6085 0.88 -0.1
103,948 + -0.8
103,948 + +1.7
103,948 + +0.3
103,956 - -0.2
103,956 - +1.5
103,956 - -1.0
103,956 - +0.2
103,956 - +0.7
103,985 + +2.5
103,986 - +0.8
104,013 + -0.3
104,013 + +0.2
104,013 + +0.9
104,021 + +0.6
104,080 - +0.9
104,232 - Atu6086 0.23 +0.6
104,248 + Atu6086 0.25 -0.1
104,375 + Atu6086 0.40 +0.1
104,406 + Atu6086 0.44 +0.8
104,494 + Atu6086 0.55 -0.6
104,494 + Atu6086 0.55 +0.2
104,501 + Atu6086 0.56 +1.4
104,511 + Atu6086 0.57 -0.7
104,530 + Atu6086 0.60 +2.3
104,536 + Atu6086 0.61 -0.3
104,561 - Atu6086 0.64 +1.0
104,577 - Atu6086 0.66 +1.3
104,601 + Atu6086 0.69 +0.1
104,624 + Atu6086 0.72 +2.3
104,647 + Atu6086 0.74 -0.4
104,647 + Atu6086 0.74 -1.0
104,655 - Atu6086 0.75 +1.9
104,655 - Atu6086 0.75 +0.4
104,655 - Atu6086 0.75 +0.3
104,655 - Atu6086 0.75 +1.5
104,801 - +0.3
104,815 + +0.5
104,823 - -0.1
104,864 - +0.6
104,867 + -0.7
104,885 - +0.2
104,950 + +0.3
105,116 + Atu6087 0.28 -0.5
105,147 - Atu6087 0.32 +0.5
105,218 + Atu6087 0.41 +1.9
105,229 + Atu6087 0.42 +0.6
105,229 + Atu6087 0.42 -0.6
105,234 + Atu6087 0.43 +0.6
105,237 - Atu6087 0.43 -0.1
105,237 - Atu6087 0.43 +0.3
105,237 - Atu6087 0.43 -0.1
105,237 - Atu6087 0.43 -0.1
105,239 + Atu6087 0.43 +0.3
105,247 - Atu6087 0.44 +2.3
105,320 + Atu6087 0.54 -1.1
105,321 + Atu6087 0.54 +1.7
105,333 + Atu6087 0.56 +0.1
105,346 - Atu6087 0.57 +0.6
105,346 - Atu6087 0.57 +0.5
105,346 - Atu6087 0.57 -1.6
105,351 + Atu6087 0.58 -0.3
105,351 + Atu6087 0.58 -0.5
105,351 + Atu6087 0.58 -0.7
105,353 + Atu6087 0.58 -0.2
105,353 + Atu6087 0.58 -0.7
105,353 + Atu6087 0.58 +2.3
105,353 + Atu6087 0.58 -0.9
105,353 + Atu6087 0.58 +1.3
105,353 - Atu6087 0.58 -0.3
105,359 - Atu6087 0.59 +0.5
105,359 - Atu6087 0.59 +0.0
105,359 - Atu6087 0.59 +0.2
105,359 - Atu6087 0.59 +0.0
105,361 - Atu6087 0.59 +0.9
105,361 - Atu6087 0.59 -0.1
105,361 - Atu6087 0.59 +0.9
105,389 + Atu6087 0.63 -0.2
105,410 - Atu6087 0.65 +0.1
105,415 - Atu6087 0.66 +0.7
105,489 + Atu6087 0.76 +0.2
105,533 + Atu6087 0.81 -1.0
105,591 + Atu6087 0.89 +3.3
105,591 + Atu6087 0.89 -0.1
105,599 - Atu6087 0.90 +0.2
105,612 - +0.8
105,635 + +0.3
105,643 - +0.3
105,643 - +1.3
105,719 - -1.4
105,719 - +0.1
105,719 - -0.1
105,801 + Atu6088 0.13 +0.5
105,806 + Atu6088 0.14 -0.2
105,806 + Atu6088 0.14 -0.6
105,806 + Atu6088 0.14 -1.4
105,806 + Atu6088 0.14 -0.3
105,806 + Atu6088 0.14 +0.4
105,806 + Atu6088 0.14 -0.8
105,806 + Atu6088 0.14 -0.4
105,806 + Atu6088 0.14 +0.1
105,806 + Atu6088 0.14 -0.1
105,806 + Atu6088 0.14 +0.6
105,806 - Atu6088 0.14 -0.4
105,809 - Atu6088 0.14 +0.1
105,814 - Atu6088 0.15 -0.0
105,814 - Atu6088 0.15 +1.4
105,814 - Atu6088 0.15 +0.6
105,814 - Atu6088 0.15 +1.2
105,814 - Atu6088 0.15 -0.5
105,814 - Atu6088 0.15 -1.0
105,814 - Atu6088 0.15 -0.7
105,814 - Atu6088 0.15 +0.5
105,814 - Atu6088 0.15 +0.5
105,827 - Atu6088 0.16 +1.1
105,849 - Atu6088 0.18 -0.3
105,859 - Atu6088 0.19 +0.3
105,944 - Atu6088 0.28 +0.2
105,971 - Atu6088 0.31 +0.6
106,030 - Atu6088 0.37 -0.7
106,032 + Atu6088 0.38 +0.8
106,032 + Atu6088 0.38 +0.3
106,040 - Atu6088 0.38 -0.7
106,040 - Atu6088 0.38 -0.4
106,053 - Atu6088 0.40 +0.5
106,201 + Atu6088 0.55 +0.3
106,201 + Atu6088 0.55 -0.4
106,209 - Atu6088 0.56 +0.9
106,209 - Atu6088 0.56 +0.8
106,209 - Atu6088 0.56 +0.1
106,231 - Atu6088 0.59 -0.9
106,285 - Atu6088 0.64 +0.7
106,390 - Atu6088 0.75 -0.3
106,519 + Atu6088 0.89 +1.3
106,560 - +2.7
106,562 - -0.4
106,562 - -1.3
106,562 - +0.7
106,573 - +1.0
106,605 - -1.3
106,609 + -0.1
106,616 - +0.7
106,617 + +0.6

Or see this region's nucleotide sequence