Experiment: Cellohexaose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5189 and Atu5190 are separated by 114 nucleotides Atu5190 and Atu5191 are separated by 160 nucleotides Atu5191 and Atu5192 are separated by 369 nucleotides Atu5192 and Atu5193 are separated by 219 nucleotides
Atu5189: Atu5189 - hypothetical protein, at 185,080 to 185,412
Atu5189
Atu5190: Atu5190 - hypothetical protein, at 185,527 to 186,249
Atu5190
Atu5191: Atu5191 - hypothetical protein, at 186,410 to 187,534
Atu5191
Atu5192: Atu5192 - hypothetical protein, at 187,904 to 188,209
Atu5192
Atu5193: Atu5193 - peptidase, at 188,429 to 190,330
Atu5193
Position (kb) 186
187
188 Strain fitness (log2 ratio) -2
-1
0
1
2 at 185.415 kb on - strand at 185.415 kb on - strand at 185.461 kb on + strand at 185.531 kb on + strand at 185.536 kb on + strand at 185.539 kb on - strand at 185.544 kb on - strand at 185.579 kb on - strand at 185.660 kb on + strand, within Atu5190 at 185.728 kb on - strand, within Atu5190 at 185.751 kb on + strand, within Atu5190 at 185.765 kb on + strand, within Atu5190 at 185.841 kb on + strand, within Atu5190 at 185.864 kb on - strand, within Atu5190 at 185.875 kb on - strand, within Atu5190 at 185.888 kb on + strand, within Atu5190 at 186.020 kb on - strand, within Atu5190 at 186.057 kb on + strand, within Atu5190 at 186.060 kb on - strand, within Atu5190 at 186.060 kb on - strand, within Atu5190 at 186.161 kb on + strand, within Atu5190 at 186.161 kb on + strand, within Atu5190 at 186.169 kb on - strand, within Atu5190 at 186.169 kb on - strand, within Atu5190 at 186.223 kb on + strand at 186.223 kb on + strand at 186.231 kb on - strand at 186.288 kb on + strand at 186.288 kb on + strand at 186.315 kb on - strand at 186.526 kb on - strand, within Atu5191 at 186.526 kb on - strand, within Atu5191 at 186.545 kb on + strand, within Atu5191 at 186.632 kb on - strand, within Atu5191 at 186.689 kb on + strand, within Atu5191 at 186.696 kb on - strand, within Atu5191 at 186.748 kb on + strand, within Atu5191 at 186.788 kb on + strand, within Atu5191 at 186.832 kb on - strand, within Atu5191 at 186.834 kb on - strand, within Atu5191 at 186.875 kb on - strand, within Atu5191 at 186.974 kb on + strand, within Atu5191 at 186.995 kb on + strand, within Atu5191 at 187.096 kb on - strand, within Atu5191 at 187.098 kb on - strand, within Atu5191 at 187.164 kb on + strand, within Atu5191 at 187.164 kb on + strand, within Atu5191 at 187.164 kb on + strand, within Atu5191 at 187.164 kb on - strand, within Atu5191 at 187.174 kb on - strand, within Atu5191 at 187.181 kb on + strand, within Atu5191 at 187.264 kb on - strand, within Atu5191 at 187.264 kb on - strand, within Atu5191 at 187.479 kb on - strand at 187.602 kb on - strand at 187.632 kb on + strand at 187.679 kb on - strand at 187.756 kb on + strand at 187.819 kb on - strand at 187.831 kb on + strand at 187.839 kb on - strand at 187.886 kb on - strand at 187.904 kb on - strand at 187.923 kb on + strand at 187.931 kb on - strand at 187.964 kb on + strand, within Atu5192 at 187.992 kb on - strand, within Atu5192 at 187.999 kb on + strand, within Atu5192 at 187.999 kb on - strand, within Atu5192 at 188.004 kb on - strand, within Atu5192 at 188.007 kb on - strand, within Atu5192 at 188.040 kb on - strand, within Atu5192 at 188.110 kb on + strand, within Atu5192 at 188.116 kb on - strand, within Atu5192 at 188.134 kb on + strand, within Atu5192 at 188.134 kb on + strand, within Atu5192 at 188.141 kb on - strand, within Atu5192 at 188.142 kb on - strand, within Atu5192 at 188.142 kb on - strand, within Atu5192 at 188.174 kb on - strand, within Atu5192 at 188.218 kb on + strand at 188.273 kb on - strand at 188.428 kb on - strand at 188.431 kb on + strand at 188.436 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cellohexaose (C) remove 185,415 - -0.1 185,415 - +0.5 185,461 + +1.2 185,531 + +0.2 185,536 + +0.8 185,539 - -0.1 185,544 - +1.8 185,579 - +0.1 185,660 + Atu5190 0.18 +2.0 185,728 - Atu5190 0.28 -0.1 185,751 + Atu5190 0.31 -0.3 185,765 + Atu5190 0.33 -0.6 185,841 + Atu5190 0.43 +0.5 185,864 - Atu5190 0.47 +0.3 185,875 - Atu5190 0.48 -0.9 185,888 + Atu5190 0.50 +0.7 186,020 - Atu5190 0.68 +0.7 186,057 + Atu5190 0.73 -0.3 186,060 - Atu5190 0.74 +2.0 186,060 - Atu5190 0.74 +0.8 186,161 + Atu5190 0.88 -0.2 186,161 + Atu5190 0.88 -0.8 186,169 - Atu5190 0.89 +0.8 186,169 - Atu5190 0.89 -1.3 186,223 + -0.5 186,223 + -0.5 186,231 - +0.2 186,288 + -0.8 186,288 + -0.4 186,315 - -0.8 186,526 - Atu5191 0.10 +1.0 186,526 - Atu5191 0.10 +0.2 186,545 + Atu5191 0.12 -0.4 186,632 - Atu5191 0.20 +1.5 186,689 + Atu5191 0.25 +0.4 186,696 - Atu5191 0.25 +0.6 186,748 + Atu5191 0.30 -0.2 186,788 + Atu5191 0.34 -0.3 186,832 - Atu5191 0.38 -0.2 186,834 - Atu5191 0.38 +0.2 186,875 - Atu5191 0.41 -2.3 186,974 + Atu5191 0.50 -1.1 186,995 + Atu5191 0.52 +0.0 187,096 - Atu5191 0.61 -0.0 187,098 - Atu5191 0.61 +0.4 187,164 + Atu5191 0.67 -1.4 187,164 + Atu5191 0.67 -0.2 187,164 + Atu5191 0.67 -0.4 187,164 - Atu5191 0.67 -0.6 187,174 - Atu5191 0.68 -0.3 187,181 + Atu5191 0.69 -1.1 187,264 - Atu5191 0.76 +0.9 187,264 - Atu5191 0.76 -0.6 187,479 - +0.2 187,602 - +0.8 187,632 + -0.2 187,679 - -1.1 187,756 + +0.7 187,819 - -0.0 187,831 + +0.2 187,839 - -0.4 187,886 - +0.2 187,904 - +0.0 187,923 + +0.2 187,931 - +1.3 187,964 + Atu5192 0.20 -0.1 187,992 - Atu5192 0.29 -0.3 187,999 + Atu5192 0.31 +1.4 187,999 - Atu5192 0.31 -2.6 188,004 - Atu5192 0.33 -2.1 188,007 - Atu5192 0.34 +0.9 188,040 - Atu5192 0.44 +0.9 188,110 + Atu5192 0.67 -0.6 188,116 - Atu5192 0.69 -0.2 188,134 + Atu5192 0.75 +0.8 188,134 + Atu5192 0.75 -0.8 188,141 - Atu5192 0.77 +0.2 188,142 - Atu5192 0.78 +0.2 188,142 - Atu5192 0.78 +1.7 188,174 - Atu5192 0.88 -0.3 188,218 + +1.0 188,273 - +1.0 188,428 - -0.4 188,431 + +0.7 188,436 + +0.3
Or see this region's nucleotide sequence