Strain Fitness in Agrobacterium fabrum C58 around Atu5056

Experiment: Cellohexaose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5055 and Atu5056 are separated by 324 nucleotidesAtu5056 and Atu5057 are separated by 35 nucleotidesAtu5057 and Atu5058 are separated by 356 nucleotides Atu5055: Atu5055 - ATP-dependent DNA ligase, at 52,456 to 55,110 Atu5055 Atu5056: Atu5056 - hypothetical protein, at 55,435 to 56,250 Atu5056 Atu5057: Atu5057 - hypothetical protein, at 56,286 to 56,594 Atu5057 Atu5058: Atu5058 - ABC transporter substrate binding protein (glycerol-3-phosphate), at 56,951 to 58,210 Atu5058 Position (kb) 55 56 57Strain fitness (log2 ratio) -2 -1 0 1 2at 54.495 kb on - strand, within Atu5055at 54.495 kb on - strand, within Atu5055at 54.537 kb on + strand, within Atu5055at 54.668 kb on + strand, within Atu5055at 54.692 kb on + strand, within Atu5055at 54.768 kb on - strand, within Atu5055at 54.788 kb on + strand, within Atu5055at 54.796 kb on + strand, within Atu5055at 54.796 kb on + strand, within Atu5055at 54.804 kb on - strand, within Atu5055at 54.820 kb on - strand, within Atu5055at 54.859 kb on - strandat 54.863 kb on - strandat 54.903 kb on + strandat 54.908 kb on + strandat 54.911 kb on - strandat 54.976 kb on - strandat 54.976 kb on - strandat 55.088 kb on + strandat 55.095 kb on - strandat 55.122 kb on + strandat 55.140 kb on + strandat 55.148 kb on - strandat 55.148 kb on - strandat 55.155 kb on + strandat 55.183 kb on - strandat 55.183 kb on - strandat 55.265 kb on + strandat 55.265 kb on + strandat 55.273 kb on - strandat 55.273 kb on - strandat 55.281 kb on - strandat 55.336 kb on - strandat 55.360 kb on + strandat 55.368 kb on - strandat 55.490 kb on - strandat 55.520 kb on + strand, within Atu5056at 55.523 kb on - strand, within Atu5056at 55.552 kb on + strand, within Atu5056at 55.560 kb on - strand, within Atu5056at 55.602 kb on + strand, within Atu5056at 55.608 kb on + strand, within Atu5056at 55.608 kb on + strand, within Atu5056at 55.616 kb on - strand, within Atu5056at 55.616 kb on - strand, within Atu5056at 55.616 kb on - strand, within Atu5056at 55.625 kb on + strand, within Atu5056at 55.633 kb on - strand, within Atu5056at 55.636 kb on + strand, within Atu5056at 55.677 kb on + strand, within Atu5056at 55.685 kb on - strand, within Atu5056at 55.704 kb on + strand, within Atu5056at 55.755 kb on + strand, within Atu5056at 55.789 kb on - strand, within Atu5056at 55.902 kb on + strand, within Atu5056at 55.910 kb on - strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.965 kb on - strand, within Atu5056at 55.965 kb on - strand, within Atu5056at 55.965 kb on - strand, within Atu5056at 55.988 kb on + strand, within Atu5056at 56.035 kb on - strand, within Atu5056at 56.035 kb on - strand, within Atu5056at 56.073 kb on + strand, within Atu5056at 56.073 kb on + strand, within Atu5056at 56.083 kb on - strand, within Atu5056at 56.126 kb on - strand, within Atu5056at 56.148 kb on - strand, within Atu5056at 56.179 kb on - strandat 56.219 kb on + strandat 56.245 kb on + strandat 56.253 kb on - strandat 56.277 kb on - strandat 56.289 kb on + strandat 56.294 kb on + strandat 56.302 kb on - strandat 56.312 kb on - strandat 56.312 kb on - strandat 56.336 kb on - strand, within Atu5057at 56.347 kb on + strand, within Atu5057at 56.625 kb on - strandat 56.625 kb on - strandat 56.649 kb on + strandat 56.649 kb on + strandat 56.649 kb on + strandat 56.649 kb on + strandat 56.649 kb on + strandat 56.657 kb on - strandat 56.657 kb on - strandat 56.657 kb on - strandat 56.657 kb on - strandat 56.657 kb on - strandat 56.657 kb on - strandat 56.659 kb on + strandat 56.659 kb on + strandat 56.667 kb on - strandat 56.788 kb on + strandat 56.809 kb on + strandat 56.859 kb on - strandat 56.981 kb on - strandat 57.010 kb on + strandat 57.026 kb on + strandat 57.106 kb on + strand, within Atu5058at 57.221 kb on - strand, within Atu5058at 57.221 kb on - strand, within Atu5058

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Per-strain Table

Position Strand Gene LocusTag Fraction Cellohexaose (C)
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54,495 - Atu5055 0.77 +0.4
54,495 - Atu5055 0.77 +0.5
54,537 + Atu5055 0.78 +1.4
54,668 + Atu5055 0.83 +1.3
54,692 + Atu5055 0.84 +0.3
54,768 - Atu5055 0.87 +0.0
54,788 + Atu5055 0.88 +0.1
54,796 + Atu5055 0.88 +0.2
54,796 + Atu5055 0.88 -0.2
54,804 - Atu5055 0.88 +1.0
54,820 - Atu5055 0.89 +0.3
54,859 - +0.0
54,863 - +0.1
54,903 + -0.5
54,908 + -0.9
54,911 - +0.4
54,976 - +1.3
54,976 - +0.7
55,088 + +0.7
55,095 - +0.3
55,122 + -0.2
55,140 + -0.1
55,148 - +0.1
55,148 - +0.4
55,155 + -0.7
55,183 - -2.4
55,183 - +0.5
55,265 + -0.4
55,265 + +0.1
55,273 - +0.5
55,273 - -0.6
55,281 - -0.2
55,336 - -0.3
55,360 + +0.3
55,368 - -0.3
55,490 - +0.4
55,520 + Atu5056 0.10 +0.8
55,523 - Atu5056 0.11 +1.2
55,552 + Atu5056 0.14 -0.3
55,560 - Atu5056 0.15 -0.1
55,602 + Atu5056 0.20 -0.4
55,608 + Atu5056 0.21 -0.1
55,608 + Atu5056 0.21 -0.2
55,616 - Atu5056 0.22 +0.5
55,616 - Atu5056 0.22 -0.1
55,616 - Atu5056 0.22 -0.3
55,625 + Atu5056 0.23 +0.2
55,633 - Atu5056 0.24 -0.2
55,636 + Atu5056 0.25 -1.3
55,677 + Atu5056 0.30 -0.4
55,685 - Atu5056 0.31 -1.1
55,704 + Atu5056 0.33 -0.8
55,755 + Atu5056 0.39 +0.1
55,789 - Atu5056 0.43 +0.4
55,902 + Atu5056 0.57 +0.4
55,910 - Atu5056 0.58 +0.0
55,957 + Atu5056 0.64 -1.4
55,957 + Atu5056 0.64 +0.3
55,957 + Atu5056 0.64 +1.0
55,957 + Atu5056 0.64 +0.0
55,957 + Atu5056 0.64 +0.2
55,957 + Atu5056 0.64 +0.4
55,957 + Atu5056 0.64 -0.1
55,957 + Atu5056 0.64 +0.3
55,965 - Atu5056 0.65 +0.2
55,965 - Atu5056 0.65 -0.4
55,965 - Atu5056 0.65 +0.4
55,988 + Atu5056 0.68 -0.7
56,035 - Atu5056 0.74 -0.5
56,035 - Atu5056 0.74 +0.4
56,073 + Atu5056 0.78 -0.7
56,073 + Atu5056 0.78 +1.1
56,083 - Atu5056 0.79 -0.1
56,126 - Atu5056 0.85 -0.7
56,148 - Atu5056 0.87 +1.7
56,179 - -0.0
56,219 + -0.7
56,245 + -0.1
56,253 - +0.8
56,277 - -0.1
56,289 + -0.6
56,294 + +1.0
56,302 - +0.2
56,312 - +0.4
56,312 - +1.0
56,336 - Atu5057 0.16 +0.8
56,347 + Atu5057 0.20 +1.5
56,625 - -0.1
56,625 - +1.6
56,649 + +0.4
56,649 + -0.2
56,649 + +0.8
56,649 + -0.6
56,649 + -0.6
56,657 - +1.6
56,657 - +2.4
56,657 - +1.0
56,657 - +0.2
56,657 - +0.9
56,657 - +0.1
56,659 + +0.4
56,659 + -0.3
56,667 - -0.0
56,788 + -1.0
56,809 + -1.3
56,859 - -0.3
56,981 - -0.2
57,010 + +0.9
57,026 + +0.4
57,106 + Atu5058 0.12 -1.8
57,221 - Atu5058 0.21 +0.2
57,221 - Atu5058 0.21 +0.2

Or see this region's nucleotide sequence