Strain Fitness in Agrobacterium fabrum C58 around Atu0599

Experiment: Cellohexaose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0598 and Atu0599 are separated by 124 nucleotidesAtu0599 and Atu0600 are separated by 10 nucleotides Atu0598: Atu0598 - phosphogluconate dehydratase, at 583,195 to 585,015 Atu0598 Atu0599: Atu0599 - 6-phosphogluconolactonase, at 585,140 to 585,838 Atu0599 Atu0600: Atu0600 - glucose-6-phosphate 1-dehydrogenase, at 585,849 to 587,324 Atu0600 Position (kb) 585 586Strain fitness (log2 ratio) -3 -2 -1 0 1at 584.305 kb on - strand, within Atu0598at 584.477 kb on + strand, within Atu0598at 584.561 kb on - strand, within Atu0598at 584.592 kb on + strand, within Atu0598at 584.655 kb on + strand, within Atu0598at 584.661 kb on + strand, within Atu0598at 584.887 kb on + strandat 584.895 kb on - strandat 584.957 kb on + strandat 584.992 kb on - strandat 585.123 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cellohexaose (C)
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584,305 - Atu0598 0.61 -1.9
584,477 + Atu0598 0.70 -3.2
584,561 - Atu0598 0.75 -1.6
584,592 + Atu0598 0.77 -2.6
584,655 + Atu0598 0.80 -1.4
584,661 + Atu0598 0.81 -2.2
584,887 + -2.2
584,895 - -2.8
584,957 + -1.2
584,992 - -3.6
585,123 - -0.8

Or see this region's nucleotide sequence