Strain Fitness in Escherichia coli BW25113 around b3417

Experiment: 2-Furfuraldehyde 0.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmalQ and malP are separated by 9 nucleotidesmalP and malT are separated by 611 nucleotides b3416: malQ - 4-alpha-glucanotransferase (amylomaltase) (NCBI), at 3,546,008 to 3,548,092 malQ b3417: malP - maltodextrin phosphorylase (NCBI), at 3,548,102 to 3,550,495 malP b3418: malT - transcriptional regulator MalT (NCBI), at 3,551,107 to 3,553,812 malT Position (kb) 3548 3549 3550 3551Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3547.113 kb on - strand, within malQat 3547.122 kb on - strand, within malQat 3547.154 kb on - strand, within malQat 3547.154 kb on - strand, within malQat 3547.229 kb on - strand, within malQat 3547.309 kb on - strand, within malQat 3547.337 kb on + strand, within malQat 3547.337 kb on + strand, within malQat 3547.356 kb on - strand, within malQat 3547.356 kb on - strand, within malQat 3547.411 kb on - strand, within malQat 3547.490 kb on + strand, within malQat 3547.490 kb on + strand, within malQat 3547.562 kb on + strand, within malQat 3547.661 kb on - strand, within malQat 3547.661 kb on - strand, within malQat 3547.713 kb on - strand, within malQat 3547.793 kb on - strand, within malQat 3547.816 kb on + strandat 3547.848 kb on - strand, within malQat 3547.858 kb on - strand, within malQat 3547.870 kb on - strand, within malQat 3547.870 kb on - strand, within malQat 3547.918 kb on - strandat 3548.024 kb on - strandat 3548.024 kb on - strandat 3548.033 kb on + strandat 3548.051 kb on - strandat 3548.051 kb on - strandat 3548.051 kb on - strandat 3548.061 kb on + strandat 3548.067 kb on + strandat 3548.067 kb on + strandat 3548.075 kb on - strandat 3548.080 kb on - strandat 3548.084 kb on + strandat 3548.148 kb on - strandat 3548.206 kb on - strandat 3548.225 kb on - strandat 3548.245 kb on + strandat 3548.250 kb on + strandat 3548.253 kb on - strandat 3548.253 kb on - strandat 3548.305 kb on - strandat 3548.314 kb on + strandat 3548.377 kb on - strand, within malPat 3548.377 kb on - strand, within malPat 3548.381 kb on + strand, within malPat 3548.381 kb on + strand, within malPat 3548.389 kb on + strand, within malPat 3548.389 kb on + strand, within malPat 3548.389 kb on - strand, within malPat 3548.425 kb on - strand, within malPat 3548.425 kb on - strand, within malPat 3548.447 kb on - strand, within malPat 3548.524 kb on + strand, within malPat 3548.524 kb on + strand, within malPat 3548.574 kb on - strand, within malPat 3548.673 kb on + strand, within malPat 3548.674 kb on + strand, within malPat 3548.674 kb on - strand, within malPat 3548.760 kb on - strand, within malPat 3548.826 kb on - strand, within malPat 3548.862 kb on + strand, within malPat 3548.935 kb on - strand, within malPat 3548.935 kb on - strand, within malPat 3548.937 kb on - strand, within malPat 3549.086 kb on + strand, within malPat 3549.086 kb on + strand, within malPat 3549.121 kb on - strand, within malPat 3549.136 kb on + strand, within malPat 3549.136 kb on + strand, within malPat 3549.144 kb on - strand, within malPat 3549.155 kb on + strand, within malPat 3549.172 kb on + strand, within malPat 3549.172 kb on + strand, within malPat 3549.229 kb on + strand, within malPat 3549.287 kb on + strand, within malPat 3549.342 kb on + strand, within malPat 3549.346 kb on - strand, within malPat 3549.354 kb on - strand, within malPat 3549.434 kb on + strand, within malPat 3549.434 kb on + strand, within malPat 3549.454 kb on + strand, within malPat 3549.462 kb on - strand, within malPat 3549.462 kb on - strand, within malPat 3549.510 kb on - strand, within malPat 3549.552 kb on - strand, within malPat 3549.576 kb on - strand, within malPat 3549.583 kb on + strand, within malPat 3549.613 kb on + strand, within malPat 3549.643 kb on + strand, within malPat 3549.697 kb on - strand, within malPat 3549.716 kb on - strand, within malPat 3549.716 kb on - strand, within malPat 3549.774 kb on + strand, within malPat 3549.774 kb on + strand, within malPat 3549.822 kb on + strand, within malPat 3549.858 kb on + strand, within malPat 3549.866 kb on - strand, within malPat 3549.958 kb on - strand, within malPat 3549.988 kb on + strand, within malPat 3550.004 kb on - strand, within malPat 3550.004 kb on - strand, within malPat 3550.100 kb on - strand, within malPat 3550.102 kb on + strand, within malPat 3550.143 kb on - strand, within malPat 3550.143 kb on - strand, within malPat 3550.160 kb on + strand, within malPat 3550.160 kb on + strand, within malPat 3550.231 kb on + strand, within malPat 3550.350 kb on + strandat 3550.353 kb on - strandat 3550.353 kb on - strandat 3550.389 kb on - strandat 3550.429 kb on - strandat 3550.446 kb on - strandat 3550.462 kb on + strandat 3550.500 kb on - strandat 3550.526 kb on + strandat 3550.526 kb on + strandat 3550.564 kb on + strandat 3550.607 kb on + strandat 3550.622 kb on + strandat 3550.622 kb on + strandat 3550.624 kb on + strandat 3550.624 kb on + strandat 3550.640 kb on - strandat 3550.671 kb on + strandat 3550.671 kb on + strandat 3550.679 kb on - strandat 3550.679 kb on - strandat 3550.679 kb on - strandat 3550.800 kb on + strandat 3550.812 kb on - strandat 3550.812 kb on - strandat 3550.813 kb on - strandat 3550.813 kb on - strandat 3550.844 kb on + strandat 3550.844 kb on + strandat 3550.898 kb on + strandat 3550.911 kb on - strandat 3550.911 kb on - strandat 3550.913 kb on + strandat 3550.946 kb on + strandat 3550.949 kb on + strandat 3550.949 kb on + strandat 3550.967 kb on + strandat 3550.975 kb on - strandat 3550.975 kb on - strandat 3550.975 kb on - strandat 3550.977 kb on + strandat 3550.977 kb on + strandat 3550.977 kb on + strandat 3551.000 kb on - strandat 3551.003 kb on + strandat 3551.024 kb on - strandat 3551.032 kb on - strandat 3551.036 kb on + strandat 3551.037 kb on + strandat 3551.045 kb on - strandat 3551.045 kb on - strandat 3551.045 kb on - strandat 3551.092 kb on + strandat 3551.092 kb on + strandat 3551.147 kb on + strandat 3551.152 kb on + strandat 3551.161 kb on + strandat 3551.214 kb on + strandat 3551.229 kb on + strandat 3551.229 kb on + strandat 3551.243 kb on - strandat 3551.284 kb on + strandat 3551.301 kb on - strandat 3551.304 kb on + strandat 3551.314 kb on + strandat 3551.314 kb on + strandat 3551.338 kb on + strandat 3551.425 kb on - strand, within malTat 3551.425 kb on - strand, within malTat 3551.430 kb on - strand, within malTat 3551.481 kb on - strand, within malTat 3551.488 kb on + strand, within malT

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.25 vol%
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3,547,113 - malQ b3416 0.53 -0.7
3,547,122 - malQ b3416 0.53 +0.3
3,547,154 - malQ b3416 0.55 +0.1
3,547,154 - malQ b3416 0.55 +0.9
3,547,229 - malQ b3416 0.59 -0.2
3,547,309 - malQ b3416 0.62 +1.1
3,547,337 + malQ b3416 0.64 -0.8
3,547,337 + malQ b3416 0.64 +0.4
3,547,356 - malQ b3416 0.65 +0.1
3,547,356 - malQ b3416 0.65 +0.1
3,547,411 - malQ b3416 0.67 -2.2
3,547,490 + malQ b3416 0.71 +1.5
3,547,490 + malQ b3416 0.71 -1.4
3,547,562 + malQ b3416 0.75 -0.2
3,547,661 - malQ b3416 0.79 -1.7
3,547,661 - malQ b3416 0.79 +0.2
3,547,713 - malQ b3416 0.82 +0.4
3,547,793 - malQ b3416 0.86 -0.7
3,547,816 + +2.1
3,547,848 - malQ b3416 0.88 +0.7
3,547,858 - malQ b3416 0.89 -0.7
3,547,870 - malQ b3416 0.89 -0.9
3,547,870 - malQ b3416 0.89 +1.1
3,547,918 - +1.1
3,548,024 - +1.7
3,548,024 - +0.1
3,548,033 + +0.4
3,548,051 - +0.3
3,548,051 - +0.2
3,548,051 - +0.1
3,548,061 + +0.4
3,548,067 + -2.1
3,548,067 + +1.0
3,548,075 - -1.2
3,548,080 - +0.5
3,548,084 + +0.0
3,548,148 - -1.2
3,548,206 - +1.2
3,548,225 - -0.1
3,548,245 + +0.1
3,548,250 + +0.1
3,548,253 - +0.1
3,548,253 - +0.8
3,548,305 - +1.1
3,548,314 + +0.7
3,548,377 - malP b3417 0.11 +1.4
3,548,377 - malP b3417 0.11 +0.1
3,548,381 + malP b3417 0.12 +0.8
3,548,381 + malP b3417 0.12 +0.6
3,548,389 + malP b3417 0.12 -0.4
3,548,389 + malP b3417 0.12 +1.4
3,548,389 - malP b3417 0.12 +0.9
3,548,425 - malP b3417 0.13 +0.4
3,548,425 - malP b3417 0.13 +2.3
3,548,447 - malP b3417 0.14 +2.1
3,548,524 + malP b3417 0.18 +1.1
3,548,524 + malP b3417 0.18 -0.2
3,548,574 - malP b3417 0.20 +1.1
3,548,673 + malP b3417 0.24 +0.9
3,548,674 + malP b3417 0.24 +0.5
3,548,674 - malP b3417 0.24 +0.7
3,548,760 - malP b3417 0.27 +0.1
3,548,826 - malP b3417 0.30 +1.5
3,548,862 + malP b3417 0.32 -0.3
3,548,935 - malP b3417 0.35 -0.1
3,548,935 - malP b3417 0.35 +1.4
3,548,937 - malP b3417 0.35 +0.4
3,549,086 + malP b3417 0.41 +0.2
3,549,086 + malP b3417 0.41 +1.1
3,549,121 - malP b3417 0.43 +0.6
3,549,136 + malP b3417 0.43 +0.7
3,549,136 + malP b3417 0.43 -0.2
3,549,144 - malP b3417 0.44 +0.2
3,549,155 + malP b3417 0.44 +0.5
3,549,172 + malP b3417 0.45 +0.5
3,549,172 + malP b3417 0.45 +0.6
3,549,229 + malP b3417 0.47 -0.9
3,549,287 + malP b3417 0.49 +1.1
3,549,342 + malP b3417 0.52 +1.9
3,549,346 - malP b3417 0.52 -0.4
3,549,354 - malP b3417 0.52 +0.1
3,549,434 + malP b3417 0.56 +0.2
3,549,434 + malP b3417 0.56 +0.3
3,549,454 + malP b3417 0.56 +0.9
3,549,462 - malP b3417 0.57 +1.1
3,549,462 - malP b3417 0.57 +1.1
3,549,510 - malP b3417 0.59 +0.8
3,549,552 - malP b3417 0.61 +0.9
3,549,576 - malP b3417 0.62 +0.8
3,549,583 + malP b3417 0.62 +1.1
3,549,613 + malP b3417 0.63 -0.5
3,549,643 + malP b3417 0.64 +0.9
3,549,697 - malP b3417 0.67 +0.5
3,549,716 - malP b3417 0.67 +0.7
3,549,716 - malP b3417 0.67 +1.0
3,549,774 + malP b3417 0.70 -0.1
3,549,774 + malP b3417 0.70 -1.0
3,549,822 + malP b3417 0.72 -1.3
3,549,858 + malP b3417 0.73 +1.5
3,549,866 - malP b3417 0.74 +0.8
3,549,958 - malP b3417 0.78 +1.9
3,549,988 + malP b3417 0.79 -1.7
3,550,004 - malP b3417 0.79 +1.0
3,550,004 - malP b3417 0.79 +1.9
3,550,100 - malP b3417 0.83 +0.4
3,550,102 + malP b3417 0.84 +0.1
3,550,143 - malP b3417 0.85 -0.5
3,550,143 - malP b3417 0.85 +1.1
3,550,160 + malP b3417 0.86 -0.1
3,550,160 + malP b3417 0.86 -0.3
3,550,231 + malP b3417 0.89 -0.2
3,550,350 + -0.0
3,550,353 - -1.5
3,550,353 - +1.6
3,550,389 - +0.6
3,550,429 - +2.9
3,550,446 - -0.3
3,550,462 + +0.7
3,550,500 - -0.6
3,550,526 + -0.6
3,550,526 + +0.4
3,550,564 + +1.3
3,550,607 + +1.2
3,550,622 + +1.6
3,550,622 + +1.1
3,550,624 + +0.2
3,550,624 + +1.9
3,550,640 - -0.2
3,550,671 + +0.1
3,550,671 + +1.1
3,550,679 - -0.4
3,550,679 - +0.5
3,550,679 - +1.1
3,550,800 + +0.5
3,550,812 - -0.5
3,550,812 - +0.3
3,550,813 - +0.5
3,550,813 - +1.1
3,550,844 + -0.2
3,550,844 + +1.4
3,550,898 + -1.0
3,550,911 - -1.5
3,550,911 - -0.9
3,550,913 + +0.9
3,550,946 + +1.2
3,550,949 + -0.6
3,550,949 + -0.7
3,550,967 + +1.1
3,550,975 - -0.5
3,550,975 - -1.1
3,550,975 - +0.3
3,550,977 + +0.7
3,550,977 + +0.6
3,550,977 + +2.1
3,551,000 - -0.1
3,551,003 + -1.2
3,551,024 - -2.5
3,551,032 - -1.2
3,551,036 + +0.7
3,551,037 + +0.8
3,551,045 - -0.5
3,551,045 - -1.2
3,551,045 - -0.5
3,551,092 + +0.4
3,551,092 + +0.7
3,551,147 + +0.5
3,551,152 + -1.6
3,551,161 + -0.6
3,551,214 + +0.3
3,551,229 + +0.2
3,551,229 + +0.9
3,551,243 - -0.5
3,551,284 + -0.9
3,551,301 - -1.0
3,551,304 + -0.2
3,551,314 + +0.1
3,551,314 + +0.5
3,551,338 + -1.2
3,551,425 - malT b3418 0.12 -0.8
3,551,425 - malT b3418 0.12 -1.0
3,551,430 - malT b3418 0.12 -0.4
3,551,481 - malT b3418 0.14 -2.1
3,551,488 + malT b3418 0.14 -1.0

Or see this region's nucleotide sequence