Strain Fitness in Escherichia coli BW25113 around b4232
Experiment: 2-Furfuraldehyde 0.25 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2-Furfuraldehyde 0.25 vol% |
---|---|---|---|---|---|
remove | |||||
4,451,646 | + | +0.3 | |||
4,451,775 | + | yjfF | b4231 | 0.17 | -0.1 |
4,451,775 | + | yjfF | b4231 | 0.17 | +0.2 |
4,451,791 | - | yjfF | b4231 | 0.19 | -0.5 |
4,451,830 | - | yjfF | b4231 | 0.22 | -1.0 |
4,451,830 | - | yjfF | b4231 | 0.22 | +1.2 |
4,451,944 | - | yjfF | b4231 | 0.34 | +0.6 |
4,452,005 | - | yjfF | b4231 | 0.40 | -0.6 |
4,452,005 | - | yjfF | b4231 | 0.40 | +1.0 |
4,452,046 | - | yjfF | b4231 | 0.44 | -0.3 |
4,452,046 | - | yjfF | b4231 | 0.44 | -0.9 |
4,452,131 | + | yjfF | b4231 | 0.53 | -0.2 |
4,452,132 | + | yjfF | b4231 | 0.53 | -0.2 |
4,452,169 | + | yjfF | b4231 | 0.57 | -0.7 |
4,452,169 | + | yjfF | b4231 | 0.57 | +1.0 |
4,452,187 | - | yjfF | b4231 | 0.58 | -1.1 |
4,452,307 | - | yjfF | b4231 | 0.70 | -0.7 |
4,452,398 | + | yjfF | b4231 | 0.80 | -0.4 |
4,452,406 | - | yjfF | b4231 | 0.80 | +0.3 |
4,452,406 | - | yjfF | b4231 | 0.80 | -0.1 |
4,452,442 | + | yjfF | b4231 | 0.84 | +0.5 |
4,452,471 | + | yjfF | b4231 | 0.87 | +0.2 |
4,452,555 | - | +0.5 | |||
4,452,623 | + | +1.3 | |||
4,452,623 | + | +0.5 | |||
4,452,627 | - | -1.3 | |||
4,452,685 | - | +0.3 | |||
4,452,709 | + | -0.5 | |||
4,452,770 | + | fbp | b4232 | 0.14 | -1.0 |
4,452,867 | - | fbp | b4232 | 0.23 | +2.0 |
4,452,869 | - | fbp | b4232 | 0.24 | +0.0 |
4,452,869 | - | fbp | b4232 | 0.24 | -1.3 |
4,452,906 | + | fbp | b4232 | 0.27 | +0.0 |
4,452,926 | + | fbp | b4232 | 0.29 | +0.2 |
4,452,934 | - | fbp | b4232 | 0.30 | +0.2 |
4,452,971 | + | fbp | b4232 | 0.34 | -0.8 |
4,452,989 | + | fbp | b4232 | 0.36 | +0.0 |
4,452,989 | + | fbp | b4232 | 0.36 | -0.2 |
4,453,022 | - | fbp | b4232 | 0.39 | +0.2 |
4,453,102 | + | fbp | b4232 | 0.47 | -0.5 |
4,453,105 | - | fbp | b4232 | 0.47 | +0.5 |
4,453,132 | - | fbp | b4232 | 0.50 | -0.3 |
4,453,139 | + | fbp | b4232 | 0.51 | +0.5 |
4,453,147 | + | fbp | b4232 | 0.51 | +0.9 |
4,453,147 | + | fbp | b4232 | 0.51 | +1.0 |
4,453,147 | + | fbp | b4232 | 0.51 | +0.8 |
4,453,155 | - | fbp | b4232 | 0.52 | -0.3 |
4,453,155 | - | fbp | b4232 | 0.52 | +0.5 |
4,453,226 | + | fbp | b4232 | 0.59 | +1.1 |
4,453,289 | + | fbp | b4232 | 0.66 | -0.8 |
4,453,289 | + | fbp | b4232 | 0.66 | -0.3 |
4,453,289 | + | fbp | b4232 | 0.66 | -0.5 |
4,453,306 | + | fbp | b4232 | 0.67 | -0.6 |
4,453,314 | - | fbp | b4232 | 0.68 | -0.2 |
4,453,368 | - | fbp | b4232 | 0.73 | +1.0 |
4,453,368 | - | fbp | b4232 | 0.73 | +0.6 |
4,453,368 | - | fbp | b4232 | 0.73 | -0.4 |
4,453,374 | - | fbp | b4232 | 0.74 | +0.6 |
4,453,380 | - | fbp | b4232 | 0.75 | -0.4 |
4,453,380 | - | fbp | b4232 | 0.75 | +1.3 |
4,453,391 | - | fbp | b4232 | 0.76 | -0.4 |
4,453,456 | + | fbp | b4232 | 0.82 | -1.8 |
4,453,456 | + | fbp | b4232 | 0.82 | -0.4 |
4,453,508 | - | fbp | b4232 | 0.87 | +0.0 |
4,453,518 | - | fbp | b4232 | 0.88 | -0.2 |
4,453,532 | - | fbp | b4232 | 0.90 | +1.4 |
4,453,562 | + | +0.3 | |||
4,453,569 | + | +0.3 | |||
4,453,580 | - | +0.2 | |||
4,453,580 | - | +0.4 | |||
4,453,892 | - | -0.4 | |||
4,454,033 | - | mpl | b4233 | 0.16 | +0.6 |
4,454,066 | + | mpl | b4233 | 0.19 | +1.0 |
4,454,066 | + | mpl | b4233 | 0.19 | -1.0 |
4,454,072 | - | mpl | b4233 | 0.19 | -0.3 |
4,454,082 | - | mpl | b4233 | 0.20 | +1.3 |
4,454,082 | - | mpl | b4233 | 0.20 | +2.3 |
4,454,086 | - | mpl | b4233 | 0.20 | +0.6 |
4,454,087 | - | mpl | b4233 | 0.20 | +0.4 |
4,454,087 | - | mpl | b4233 | 0.20 | +0.0 |
4,454,112 | + | mpl | b4233 | 0.22 | +1.0 |
4,454,120 | + | mpl | b4233 | 0.23 | +1.2 |
4,454,141 | - | mpl | b4233 | 0.24 | +0.9 |
4,454,141 | - | mpl | b4233 | 0.24 | +0.9 |
4,454,141 | - | mpl | b4233 | 0.24 | -0.6 |
4,454,143 | + | mpl | b4233 | 0.24 | -0.3 |
4,454,178 | - | mpl | b4233 | 0.27 | +0.4 |
4,454,186 | - | mpl | b4233 | 0.28 | +0.6 |
4,454,288 | + | mpl | b4233 | 0.35 | -0.4 |
4,454,296 | - | mpl | b4233 | 0.36 | +1.5 |
4,454,296 | - | mpl | b4233 | 0.36 | +0.5 |
4,454,317 | + | mpl | b4233 | 0.37 | +1.0 |
4,454,317 | + | mpl | b4233 | 0.37 | +0.7 |
4,454,348 | - | mpl | b4233 | 0.39 | -0.5 |
4,454,385 | + | mpl | b4233 | 0.42 | +1.0 |
4,454,506 | + | mpl | b4233 | 0.51 | +0.9 |
4,454,508 | + | mpl | b4233 | 0.51 | -0.9 |
4,454,508 | + | mpl | b4233 | 0.51 | +0.9 |
4,454,624 | - | mpl | b4233 | 0.59 | -0.5 |
4,454,624 | - | mpl | b4233 | 0.59 | +0.0 |
Or see this region's nucleotide sequence