Strain Fitness in Escherichia coli BW25113 around b4232

Experiment: 2-Furfuraldehyde 0.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjfF and fbp are separated by 32 nucleotidesfbp and mpl are separated by 175 nucleotides b4231: yjfF - putative transport system permease protein (VIMSS), at 4,451,606 to 4,452,601 yjfF b4232: fbp - fructose-1,6-bisphosphatase (NCBI), at 4,452,634 to 4,453,632 fbp b4233: mpl - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI), at 4,453,808 to 4,455,181 mpl Position (kb) 4452 4453 4454Strain fitness (log2 ratio) -2 -1 0 1 2at 4451.646 kb on + strandat 4451.775 kb on + strand, within yjfFat 4451.775 kb on + strand, within yjfFat 4451.791 kb on - strand, within yjfFat 4451.830 kb on - strand, within yjfFat 4451.830 kb on - strand, within yjfFat 4451.944 kb on - strand, within yjfFat 4452.005 kb on - strand, within yjfFat 4452.005 kb on - strand, within yjfFat 4452.046 kb on - strand, within yjfFat 4452.046 kb on - strand, within yjfFat 4452.131 kb on + strand, within yjfFat 4452.132 kb on + strand, within yjfFat 4452.169 kb on + strand, within yjfFat 4452.169 kb on + strand, within yjfFat 4452.187 kb on - strand, within yjfFat 4452.307 kb on - strand, within yjfFat 4452.398 kb on + strand, within yjfFat 4452.406 kb on - strand, within yjfFat 4452.406 kb on - strand, within yjfFat 4452.442 kb on + strand, within yjfFat 4452.471 kb on + strand, within yjfFat 4452.555 kb on - strandat 4452.623 kb on + strandat 4452.623 kb on + strandat 4452.627 kb on - strandat 4452.685 kb on - strandat 4452.709 kb on + strandat 4452.770 kb on + strand, within fbpat 4452.867 kb on - strand, within fbpat 4452.869 kb on - strand, within fbpat 4452.869 kb on - strand, within fbpat 4452.906 kb on + strand, within fbpat 4452.926 kb on + strand, within fbpat 4452.934 kb on - strand, within fbpat 4452.971 kb on + strand, within fbpat 4452.989 kb on + strand, within fbpat 4452.989 kb on + strand, within fbpat 4453.022 kb on - strand, within fbpat 4453.102 kb on + strand, within fbpat 4453.105 kb on - strand, within fbpat 4453.132 kb on - strand, within fbpat 4453.139 kb on + strand, within fbpat 4453.147 kb on + strand, within fbpat 4453.147 kb on + strand, within fbpat 4453.147 kb on + strand, within fbpat 4453.155 kb on - strand, within fbpat 4453.155 kb on - strand, within fbpat 4453.226 kb on + strand, within fbpat 4453.289 kb on + strand, within fbpat 4453.289 kb on + strand, within fbpat 4453.289 kb on + strand, within fbpat 4453.306 kb on + strand, within fbpat 4453.314 kb on - strand, within fbpat 4453.368 kb on - strand, within fbpat 4453.368 kb on - strand, within fbpat 4453.368 kb on - strand, within fbpat 4453.374 kb on - strand, within fbpat 4453.380 kb on - strand, within fbpat 4453.380 kb on - strand, within fbpat 4453.391 kb on - strand, within fbpat 4453.456 kb on + strand, within fbpat 4453.456 kb on + strand, within fbpat 4453.508 kb on - strand, within fbpat 4453.518 kb on - strand, within fbpat 4453.532 kb on - strand, within fbpat 4453.562 kb on + strandat 4453.569 kb on + strandat 4453.580 kb on - strandat 4453.580 kb on - strandat 4453.892 kb on - strandat 4454.033 kb on - strand, within mplat 4454.066 kb on + strand, within mplat 4454.066 kb on + strand, within mplat 4454.072 kb on - strand, within mplat 4454.082 kb on - strand, within mplat 4454.082 kb on - strand, within mplat 4454.086 kb on - strand, within mplat 4454.087 kb on - strand, within mplat 4454.087 kb on - strand, within mplat 4454.112 kb on + strand, within mplat 4454.120 kb on + strand, within mplat 4454.141 kb on - strand, within mplat 4454.141 kb on - strand, within mplat 4454.141 kb on - strand, within mplat 4454.143 kb on + strand, within mplat 4454.178 kb on - strand, within mplat 4454.186 kb on - strand, within mplat 4454.288 kb on + strand, within mplat 4454.296 kb on - strand, within mplat 4454.296 kb on - strand, within mplat 4454.317 kb on + strand, within mplat 4454.317 kb on + strand, within mplat 4454.348 kb on - strand, within mplat 4454.385 kb on + strand, within mplat 4454.506 kb on + strand, within mplat 4454.508 kb on + strand, within mplat 4454.508 kb on + strand, within mplat 4454.624 kb on - strand, within mplat 4454.624 kb on - strand, within mpl

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.25 vol%
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4,451,646 + +0.3
4,451,775 + yjfF b4231 0.17 -0.1
4,451,775 + yjfF b4231 0.17 +0.2
4,451,791 - yjfF b4231 0.19 -0.5
4,451,830 - yjfF b4231 0.22 -1.0
4,451,830 - yjfF b4231 0.22 +1.2
4,451,944 - yjfF b4231 0.34 +0.6
4,452,005 - yjfF b4231 0.40 -0.6
4,452,005 - yjfF b4231 0.40 +1.0
4,452,046 - yjfF b4231 0.44 -0.3
4,452,046 - yjfF b4231 0.44 -0.9
4,452,131 + yjfF b4231 0.53 -0.2
4,452,132 + yjfF b4231 0.53 -0.2
4,452,169 + yjfF b4231 0.57 -0.7
4,452,169 + yjfF b4231 0.57 +1.0
4,452,187 - yjfF b4231 0.58 -1.1
4,452,307 - yjfF b4231 0.70 -0.7
4,452,398 + yjfF b4231 0.80 -0.4
4,452,406 - yjfF b4231 0.80 +0.3
4,452,406 - yjfF b4231 0.80 -0.1
4,452,442 + yjfF b4231 0.84 +0.5
4,452,471 + yjfF b4231 0.87 +0.2
4,452,555 - +0.5
4,452,623 + +1.3
4,452,623 + +0.5
4,452,627 - -1.3
4,452,685 - +0.3
4,452,709 + -0.5
4,452,770 + fbp b4232 0.14 -1.0
4,452,867 - fbp b4232 0.23 +2.0
4,452,869 - fbp b4232 0.24 +0.0
4,452,869 - fbp b4232 0.24 -1.3
4,452,906 + fbp b4232 0.27 +0.0
4,452,926 + fbp b4232 0.29 +0.2
4,452,934 - fbp b4232 0.30 +0.2
4,452,971 + fbp b4232 0.34 -0.8
4,452,989 + fbp b4232 0.36 +0.0
4,452,989 + fbp b4232 0.36 -0.2
4,453,022 - fbp b4232 0.39 +0.2
4,453,102 + fbp b4232 0.47 -0.5
4,453,105 - fbp b4232 0.47 +0.5
4,453,132 - fbp b4232 0.50 -0.3
4,453,139 + fbp b4232 0.51 +0.5
4,453,147 + fbp b4232 0.51 +0.9
4,453,147 + fbp b4232 0.51 +1.0
4,453,147 + fbp b4232 0.51 +0.8
4,453,155 - fbp b4232 0.52 -0.3
4,453,155 - fbp b4232 0.52 +0.5
4,453,226 + fbp b4232 0.59 +1.1
4,453,289 + fbp b4232 0.66 -0.8
4,453,289 + fbp b4232 0.66 -0.3
4,453,289 + fbp b4232 0.66 -0.5
4,453,306 + fbp b4232 0.67 -0.6
4,453,314 - fbp b4232 0.68 -0.2
4,453,368 - fbp b4232 0.73 +1.0
4,453,368 - fbp b4232 0.73 +0.6
4,453,368 - fbp b4232 0.73 -0.4
4,453,374 - fbp b4232 0.74 +0.6
4,453,380 - fbp b4232 0.75 -0.4
4,453,380 - fbp b4232 0.75 +1.3
4,453,391 - fbp b4232 0.76 -0.4
4,453,456 + fbp b4232 0.82 -1.8
4,453,456 + fbp b4232 0.82 -0.4
4,453,508 - fbp b4232 0.87 +0.0
4,453,518 - fbp b4232 0.88 -0.2
4,453,532 - fbp b4232 0.90 +1.4
4,453,562 + +0.3
4,453,569 + +0.3
4,453,580 - +0.2
4,453,580 - +0.4
4,453,892 - -0.4
4,454,033 - mpl b4233 0.16 +0.6
4,454,066 + mpl b4233 0.19 +1.0
4,454,066 + mpl b4233 0.19 -1.0
4,454,072 - mpl b4233 0.19 -0.3
4,454,082 - mpl b4233 0.20 +1.3
4,454,082 - mpl b4233 0.20 +2.3
4,454,086 - mpl b4233 0.20 +0.6
4,454,087 - mpl b4233 0.20 +0.4
4,454,087 - mpl b4233 0.20 +0.0
4,454,112 + mpl b4233 0.22 +1.0
4,454,120 + mpl b4233 0.23 +1.2
4,454,141 - mpl b4233 0.24 +0.9
4,454,141 - mpl b4233 0.24 +0.9
4,454,141 - mpl b4233 0.24 -0.6
4,454,143 + mpl b4233 0.24 -0.3
4,454,178 - mpl b4233 0.27 +0.4
4,454,186 - mpl b4233 0.28 +0.6
4,454,288 + mpl b4233 0.35 -0.4
4,454,296 - mpl b4233 0.36 +1.5
4,454,296 - mpl b4233 0.36 +0.5
4,454,317 + mpl b4233 0.37 +1.0
4,454,317 + mpl b4233 0.37 +0.7
4,454,348 - mpl b4233 0.39 -0.5
4,454,385 + mpl b4233 0.42 +1.0
4,454,506 + mpl b4233 0.51 +0.9
4,454,508 + mpl b4233 0.51 -0.9
4,454,508 + mpl b4233 0.51 +0.9
4,454,624 - mpl b4233 0.59 -0.5
4,454,624 - mpl b4233 0.59 +0.0

Or see this region's nucleotide sequence