Strain Fitness in Escherichia coli BW25113 around b4226

Experiment: 2-Furfuraldehyde 0.25 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntytfP and chpS are separated by 211 nucleotideschpS and chpB overlap by 7 nucleotideschpB and ppa are separated by 79 nucleotidesppa and ytfQ are separated by 309 nucleotides b4222: ytfP - hypothetical protein (NCBI), at 4,445,917 to 4,446,258 ytfP b4224: chpS - suppressor of inhibitory function of ChpB, PemI-like, autoregulated (VIMSS), at 4,446,470 to 4,446,721 chpS b4225: chpB - toxin of the ChpB-ChpS toxin-antitoxin system (NCBI), at 4,446,715 to 4,447,065 chpB b4226: ppa - inorganic pyrophosphatase (NCBI), at 4,447,145 to 4,447,675 ppa b4227: ytfQ - predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily (NCBI), at 4,447,985 to 4,448,941 ytfQ Position (kb) 4447 4448Strain fitness (log2 ratio) -2 -1 0 1 2at 4446.166 kb on + strand, within ytfPat 4446.166 kb on + strand, within ytfPat 4446.166 kb on + strand, within ytfPat 4446.176 kb on + strand, within ytfPat 4446.176 kb on - strand, within ytfPat 4446.176 kb on - strand, within ytfPat 4446.176 kb on - strand, within ytfPat 4446.184 kb on - strand, within ytfPat 4446.184 kb on - strand, within ytfPat 4446.240 kb on + strandat 4446.259 kb on + strandat 4446.260 kb on + strandat 4446.272 kb on - strandat 4446.273 kb on - strandat 4446.273 kb on - strandat 4446.375 kb on - strandat 4446.454 kb on + strandat 4446.454 kb on + strandat 4446.496 kb on + strand, within chpSat 4446.501 kb on + strand, within chpSat 4446.501 kb on + strand, within chpSat 4446.509 kb on - strand, within chpSat 4446.509 kb on - strand, within chpSat 4446.514 kb on - strand, within chpSat 4446.559 kb on + strand, within chpSat 4446.569 kb on - strand, within chpSat 4446.569 kb on - strand, within chpSat 4446.646 kb on - strand, within chpSat 4446.652 kb on - strand, within chpSat 4446.746 kb on + strandat 4446.777 kb on + strand, within chpBat 4446.787 kb on + strand, within chpBat 4446.787 kb on + strand, within chpBat 4446.787 kb on - strand, within chpBat 4446.787 kb on - strand, within chpBat 4446.794 kb on + strand, within chpBat 4446.910 kb on + strand, within chpBat 4446.916 kb on - strand, within chpBat 4446.945 kb on + strand, within chpBat 4446.949 kb on - strand, within chpBat 4446.960 kb on + strand, within chpBat 4447.006 kb on - strand, within chpBat 4447.006 kb on - strand, within chpBat 4447.057 kb on + strandat 4447.060 kb on + strandat 4447.060 kb on + strandat 4447.779 kb on + strandat 4447.787 kb on + strandat 4447.792 kb on + strandat 4447.795 kb on - strandat 4447.795 kb on - strandat 4447.797 kb on + strandat 4447.970 kb on + strandat 4447.978 kb on - strandat 4447.983 kb on - strandat 4447.983 kb on - strandat 4448.010 kb on + strandat 4448.039 kb on + strandat 4448.039 kb on - strandat 4448.345 kb on + strand, within ytfQat 4448.347 kb on + strand, within ytfQat 4448.429 kb on + strand, within ytfQat 4448.429 kb on + strand, within ytfQat 4448.452 kb on + strand, within ytfQat 4448.538 kb on + strand, within ytfQat 4448.630 kb on + strand, within ytfQat 4448.630 kb on + strand, within ytfQat 4448.630 kb on + strand, within ytfQat 4448.630 kb on + strand, within ytfQat 4448.653 kb on + strand, within ytfQat 4448.675 kb on + strand, within ytfQ

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.25 vol%
remove
4,446,166 + ytfP b4222 0.73 +0.7
4,446,166 + ytfP b4222 0.73 +1.2
4,446,166 + ytfP b4222 0.73 +0.4
4,446,176 + ytfP b4222 0.76 +0.1
4,446,176 - ytfP b4222 0.76 +1.6
4,446,176 - ytfP b4222 0.76 +0.0
4,446,176 - ytfP b4222 0.76 +0.8
4,446,184 - ytfP b4222 0.78 +1.2
4,446,184 - ytfP b4222 0.78 +1.6
4,446,240 + +1.4
4,446,259 + +0.3
4,446,260 + -0.3
4,446,272 - -0.6
4,446,273 - -1.3
4,446,273 - +2.6
4,446,375 - -1.4
4,446,454 + +1.0
4,446,454 + -0.4
4,446,496 + chpS b4224 0.10 +0.2
4,446,501 + chpS b4224 0.12 +0.3
4,446,501 + chpS b4224 0.12 +0.3
4,446,509 - chpS b4224 0.15 -0.8
4,446,509 - chpS b4224 0.15 +1.0
4,446,514 - chpS b4224 0.17 +0.2
4,446,559 + chpS b4224 0.35 +1.0
4,446,569 - chpS b4224 0.39 +1.8
4,446,569 - chpS b4224 0.39 +0.3
4,446,646 - chpS b4224 0.70 +2.0
4,446,652 - chpS b4224 0.72 +0.5
4,446,746 + -1.0
4,446,777 + chpB b4225 0.18 +0.0
4,446,787 + chpB b4225 0.21 +0.0
4,446,787 + chpB b4225 0.21 +0.6
4,446,787 - chpB b4225 0.21 +0.3
4,446,787 - chpB b4225 0.21 -0.5
4,446,794 + chpB b4225 0.23 -0.8
4,446,910 + chpB b4225 0.56 -0.1
4,446,916 - chpB b4225 0.57 +0.2
4,446,945 + chpB b4225 0.66 +0.0
4,446,949 - chpB b4225 0.67 -0.1
4,446,960 + chpB b4225 0.70 +1.3
4,447,006 - chpB b4225 0.83 +0.2
4,447,006 - chpB b4225 0.83 -0.1
4,447,057 + +0.5
4,447,060 + -1.0
4,447,060 + -0.7
4,447,779 + +2.4
4,447,787 + -1.3
4,447,792 + +0.0
4,447,795 - -2.3
4,447,795 - +0.7
4,447,797 + +0.0
4,447,970 + +0.7
4,447,978 - +0.5
4,447,983 - +0.0
4,447,983 - -1.0
4,448,010 + +1.0
4,448,039 + -0.3
4,448,039 - +0.4
4,448,345 + ytfQ b4227 0.38 -2.1
4,448,347 + ytfQ b4227 0.38 -0.4
4,448,429 + ytfQ b4227 0.46 +0.0
4,448,429 + ytfQ b4227 0.46 +1.0
4,448,452 + ytfQ b4227 0.49 +1.0
4,448,538 + ytfQ b4227 0.58 +0.2
4,448,630 + ytfQ b4227 0.67 +1.0
4,448,630 + ytfQ b4227 0.67 +0.5
4,448,630 + ytfQ b4227 0.67 -0.3
4,448,630 + ytfQ b4227 0.67 +0.0
4,448,653 + ytfQ b4227 0.70 -0.4
4,448,675 + ytfQ b4227 0.72 -0.2

Or see this region's nucleotide sequence