Experiment: 2-Furfuraldehyde 0.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hemX and hemD are separated by 21 nucleotides hemD and hemC overlap by 4 nucleotides
b3803: hemX - predicted uroporphyrinogen III methylase (NCBI), at 3,985,908 to 3,987,089
hemX
b3804: hemD - uroporphyrinogen-III synthetase (NCBI), at 3,987,111 to 3,987,851
hemD
b3805: hemC - porphobilinogen deaminase (NCBI), at 3,987,848 to 3,988,789
hemC
Position (kb)
3987
3988 Strain fitness (log2 ratio)
-1
0
1
2 at 3986.129 kb on + strand, within hemX at 3986.139 kb on + strand, within hemX at 3986.139 kb on + strand, within hemX at 3986.149 kb on - strand, within hemX at 3986.150 kb on + strand, within hemX at 3986.151 kb on + strand, within hemX at 3986.151 kb on + strand, within hemX at 3986.168 kb on + strand, within hemX at 3986.168 kb on + strand, within hemX at 3986.180 kb on + strand, within hemX at 3986.180 kb on + strand, within hemX at 3986.207 kb on + strand, within hemX at 3986.207 kb on + strand, within hemX at 3986.215 kb on - strand, within hemX at 3986.215 kb on - strand, within hemX at 3986.280 kb on - strand, within hemX at 3986.356 kb on + strand, within hemX at 3986.356 kb on + strand, within hemX at 3986.385 kb on - strand, within hemX at 3986.387 kb on + strand, within hemX at 3986.432 kb on - strand, within hemX at 3986.491 kb on + strand, within hemX at 3986.491 kb on + strand, within hemX at 3986.498 kb on - strand, within hemX at 3986.510 kb on + strand, within hemX at 3986.510 kb on + strand, within hemX at 3986.512 kb on + strand, within hemX at 3986.536 kb on + strand, within hemX at 3986.536 kb on + strand, within hemX at 3986.539 kb on - strand, within hemX at 3986.564 kb on - strand, within hemX at 3986.571 kb on + strand, within hemX at 3986.571 kb on + strand, within hemX at 3986.601 kb on + strand, within hemX at 3986.609 kb on + strand, within hemX at 3986.618 kb on - strand, within hemX at 3986.620 kb on + strand, within hemX at 3986.623 kb on + strand, within hemX at 3986.627 kb on + strand, within hemX at 3986.627 kb on + strand, within hemX at 3986.628 kb on + strand, within hemX at 3986.638 kb on + strand, within hemX at 3986.638 kb on + strand, within hemX at 3986.812 kb on - strand, within hemX at 3986.846 kb on - strand, within hemX at 3986.897 kb on + strand, within hemX at 3986.897 kb on + strand, within hemX at 3986.922 kb on + strand, within hemX at 3986.948 kb on + strand, within hemX at 3986.964 kb on - strand, within hemX at 3986.964 kb on - strand, within hemX at 3987.023 kb on + strand at 3987.023 kb on + strand at 3987.027 kb on - strand at 3987.027 kb on - strand at 3987.031 kb on + strand at 3987.033 kb on + strand at 3987.048 kb on + strand at 3987.048 kb on - strand at 3987.051 kb on - strand at 3987.059 kb on - strand at 3987.101 kb on + strand at 3987.114 kb on + strand at 3988.789 kb on - strand at 3988.800 kb on - strand at 3988.800 kb on - strand at 3988.830 kb on - strand at 3988.830 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.25 vol% remove 3,986,129 + hemX b3803 0.19 +0.8 3,986,139 + hemX b3803 0.20 -1.4 3,986,139 + hemX b3803 0.20 -1.3 3,986,149 - hemX b3803 0.20 +0.6 3,986,150 + hemX b3803 0.20 +0.3 3,986,151 + hemX b3803 0.21 +0.2 3,986,151 + hemX b3803 0.21 +0.1 3,986,168 + hemX b3803 0.22 +0.5 3,986,168 + hemX b3803 0.22 +0.8 3,986,180 + hemX b3803 0.23 +2.5 3,986,180 + hemX b3803 0.23 +0.6 3,986,207 + hemX b3803 0.25 +0.5 3,986,207 + hemX b3803 0.25 -0.1 3,986,215 - hemX b3803 0.26 +1.7 3,986,215 - hemX b3803 0.26 +1.6 3,986,280 - hemX b3803 0.31 -1.1 3,986,356 + hemX b3803 0.38 +0.7 3,986,356 + hemX b3803 0.38 +0.5 3,986,385 - hemX b3803 0.40 +0.3 3,986,387 + hemX b3803 0.41 -0.0 3,986,432 - hemX b3803 0.44 +0.3 3,986,491 + hemX b3803 0.49 +0.5 3,986,491 + hemX b3803 0.49 +1.6 3,986,498 - hemX b3803 0.50 -0.2 3,986,510 + hemX b3803 0.51 -0.4 3,986,510 + hemX b3803 0.51 -1.6 3,986,512 + hemX b3803 0.51 -0.4 3,986,536 + hemX b3803 0.53 -0.4 3,986,536 + hemX b3803 0.53 -0.8 3,986,539 - hemX b3803 0.53 -0.3 3,986,564 - hemX b3803 0.55 +0.1 3,986,571 + hemX b3803 0.56 +0.0 3,986,571 + hemX b3803 0.56 +0.7 3,986,601 + hemX b3803 0.59 +0.4 3,986,609 + hemX b3803 0.59 -0.0 3,986,618 - hemX b3803 0.60 -0.4 3,986,620 + hemX b3803 0.60 +2.4 3,986,623 + hemX b3803 0.60 +0.4 3,986,627 + hemX b3803 0.61 +0.3 3,986,627 + hemX b3803 0.61 -1.1 3,986,628 + hemX b3803 0.61 +1.9 3,986,638 + hemX b3803 0.62 -0.5 3,986,638 + hemX b3803 0.62 +1.2 3,986,812 - hemX b3803 0.76 +0.2 3,986,846 - hemX b3803 0.79 +0.6 3,986,897 + hemX b3803 0.84 +0.7 3,986,897 + hemX b3803 0.84 -0.4 3,986,922 + hemX b3803 0.86 +0.1 3,986,948 + hemX b3803 0.88 -0.4 3,986,964 - hemX b3803 0.89 -0.0 3,986,964 - hemX b3803 0.89 +0.5 3,987,023 + -0.6 3,987,023 + -0.7 3,987,027 - +0.5 3,987,027 - +0.5 3,987,031 + +0.0 3,987,033 + +1.5 3,987,048 + -0.0 3,987,048 - +0.6 3,987,051 - +0.3 3,987,059 - +1.2 3,987,101 + +1.5 3,987,114 + +0.1 3,988,789 - -0.4 3,988,800 - -0.1 3,988,800 - +0.5 3,988,830 - -0.6 3,988,830 - -0.1
Or see this region's nucleotide sequence