Strain Fitness in Escherichia coli BW25113 around b3190
Experiment: 2-Furfuraldehyde 0.25 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2-Furfuraldehyde 0.25 vol% |
---|---|---|---|---|---|
remove | |||||
3,334,619 | - | yrbA | b3190 | 0.19 | +2.1 |
3,334,630 | + | yrbA | b3190 | 0.23 | +1.8 |
3,334,638 | - | yrbA | b3190 | 0.26 | +2.0 |
3,334,638 | - | yrbA | b3190 | 0.26 | +1.6 |
3,334,639 | + | yrbA | b3190 | 0.27 | +1.2 |
3,334,639 | + | yrbA | b3190 | 0.27 | +2.2 |
3,334,710 | - | yrbA | b3190 | 0.55 | +1.7 |
3,334,718 | + | yrbA | b3190 | 0.58 | +2.7 |
3,334,724 | + | yrbA | b3190 | 0.60 | +0.9 |
3,334,780 | - | yrbA | b3190 | 0.82 | +2.5 |
3,334,780 | - | yrbA | b3190 | 0.82 | +2.9 |
3,334,793 | + | yrbA | b3190 | 0.87 | -2.5 |
3,334,801 | - | +1.0 | |||
3,334,801 | - | +2.4 | |||
3,334,843 | + | -2.2 | |||
3,334,883 | + | -2.3 | |||
3,334,918 | + | -0.9 | |||
3,334,918 | + | +0.0 | |||
3,335,030 | + | yrbB | b3191 | 0.15 | -0.7 |
3,335,030 | + | yrbB | b3191 | 0.15 | +0.3 |
3,335,030 | + | yrbB | b3191 | 0.15 | +1.6 |
3,335,030 | + | yrbB | b3191 | 0.15 | -0.3 |
3,335,030 | + | yrbB | b3191 | 0.15 | +0.2 |
3,335,030 | + | yrbB | b3191 | 0.15 | +2.6 |
3,335,031 | + | yrbB | b3191 | 0.16 | +0.0 |
3,335,031 | + | yrbB | b3191 | 0.16 | +1.3 |
3,335,036 | + | yrbB | b3191 | 0.17 | -0.1 |
3,335,036 | + | yrbB | b3191 | 0.17 | -0.1 |
3,335,038 | - | yrbB | b3191 | 0.18 | +0.5 |
3,335,038 | - | yrbB | b3191 | 0.18 | +1.3 |
3,335,038 | - | yrbB | b3191 | 0.18 | -1.0 |
3,335,038 | - | yrbB | b3191 | 0.18 | +0.9 |
3,335,038 | - | yrbB | b3191 | 0.18 | +0.5 |
3,335,059 | - | yrbB | b3191 | 0.25 | -0.3 |
3,335,060 | - | yrbB | b3191 | 0.26 | -0.5 |
3,335,098 | + | yrbB | b3191 | 0.38 | +0.8 |
3,335,098 | + | yrbB | b3191 | 0.38 | -0.8 |
3,335,102 | + | yrbB | b3191 | 0.40 | +0.0 |
3,335,102 | + | yrbB | b3191 | 0.40 | +0.5 |
3,335,120 | + | yrbB | b3191 | 0.46 | -0.8 |
3,335,128 | - | yrbB | b3191 | 0.49 | +1.3 |
3,335,137 | + | yrbB | b3191 | 0.52 | +0.5 |
3,335,142 | + | yrbB | b3191 | 0.53 | +0.6 |
3,335,142 | + | yrbB | b3191 | 0.53 | -0.5 |
3,335,162 | - | yrbB | b3191 | 0.60 | -1.1 |
3,335,165 | + | yrbB | b3191 | 0.61 | -0.5 |
3,335,198 | + | yrbB | b3191 | 0.72 | +0.8 |
3,335,198 | + | yrbB | b3191 | 0.72 | +0.2 |
3,335,205 | + | yrbB | b3191 | 0.75 | +0.2 |
3,335,236 | - | yrbB | b3191 | 0.85 | +0.5 |
3,335,340 | + | -1.0 | |||
3,335,362 | - | yrbC | b3192 | 0.13 | +1.0 |
3,335,362 | - | yrbC | b3192 | 0.13 | +0.9 |
3,335,404 | + | yrbC | b3192 | 0.20 | -0.8 |
3,335,428 | - | yrbC | b3192 | 0.24 | +1.5 |
3,335,428 | - | yrbC | b3192 | 0.24 | +0.3 |
3,335,461 | + | yrbC | b3192 | 0.29 | +1.0 |
3,335,481 | + | yrbC | b3192 | 0.32 | +0.0 |
3,335,500 | + | yrbC | b3192 | 0.35 | -0.3 |
3,335,500 | + | yrbC | b3192 | 0.35 | -1.5 |
3,335,547 | + | yrbC | b3192 | 0.42 | -0.5 |
3,335,581 | - | yrbC | b3192 | 0.48 | +0.0 |
3,335,581 | - | yrbC | b3192 | 0.48 | +1.2 |
3,335,583 | - | yrbC | b3192 | 0.48 | +0.2 |
3,335,627 | - | yrbC | b3192 | 0.55 | +0.0 |
3,335,627 | - | yrbC | b3192 | 0.55 | +1.0 |
3,335,649 | + | yrbC | b3192 | 0.58 | -0.0 |
3,335,655 | + | yrbC | b3192 | 0.59 | -2.1 |
3,335,655 | + | yrbC | b3192 | 0.59 | +0.5 |
3,335,663 | + | yrbC | b3192 | 0.61 | +0.9 |
3,335,665 | + | yrbC | b3192 | 0.61 | +0.4 |
3,335,666 | + | yrbC | b3192 | 0.61 | +1.0 |
3,335,674 | - | yrbC | b3192 | 0.62 | -0.2 |
3,335,674 | - | +1.0 | |||
3,335,674 | - | yrbC | b3192 | 0.62 | +0.2 |
3,335,674 | - | yrbC | b3192 | 0.62 | -0.3 |
3,335,674 | - | yrbC | b3192 | 0.62 | -0.7 |
3,335,680 | - | yrbC | b3192 | 0.63 | -1.0 |
3,335,680 | - | yrbC | b3192 | 0.63 | +1.4 |
3,335,682 | + | yrbC | b3192 | 0.64 | -0.2 |
3,335,682 | + | yrbC | b3192 | 0.64 | -0.1 |
3,335,711 | + | yrbC | b3192 | 0.68 | -0.6 |
3,335,730 | + | yrbC | b3192 | 0.71 | +0.8 |
3,335,732 | - | yrbC | b3192 | 0.71 | +1.6 |
3,335,732 | - | yrbC | b3192 | 0.71 | +0.1 |
3,335,732 | - | yrbC | b3192 | 0.71 | -1.5 |
3,335,825 | + | yrbC | b3192 | 0.86 | -0.5 |
Or see this region's nucleotide sequence