Strain Fitness in Escherichia coli BW25113 around b2394

Experiment: 2-Furfuraldehyde 0.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnupC and yi81_3 are separated by 86 nucleotidesyi81_3 and yfeA are separated by 199 nucleotides b2393: nupC - nucleoside (except guanosine) transporter (NCBI), at 2,511,064 to 2,512,266 nupC b2394: yi81_3 - IS186 hypothetical protein (VIMSS), at 2,512,353 to 2,513,465 _3 b2395: yfeA - orf, hypothetical protein (VIMSS), at 2,513,665 to 2,515,854 yfeA Position (kb) 2512 2513 2514Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2511.365 kb on + strand, within nupCat 2511.504 kb on + strand, within nupCat 2511.504 kb on + strand, within nupCat 2511.564 kb on + strand, within nupCat 2511.623 kb on - strand, within nupCat 2511.623 kb on - strand, within nupCat 2511.690 kb on + strand, within nupCat 2511.730 kb on - strand, within nupCat 2511.918 kb on + strand, within nupCat 2511.930 kb on - strand, within nupCat 2511.993 kb on - strand, within nupCat 2511.995 kb on + strand, within nupCat 2511.995 kb on + strand, within nupCat 2512.099 kb on - strand, within nupCat 2512.099 kb on - strand, within nupCat 2512.222 kb on - strandat 2512.222 kb on - strandat 2512.227 kb on - strandat 2512.228 kb on + strandat 2512.331 kb on - strandat 2512.331 kb on - strandat 2513.680 kb on - strandat 2513.680 kb on - strandat 2513.751 kb on - strandat 2513.769 kb on + strandat 2513.775 kb on + strandat 2514.032 kb on - strand, within yfeAat 2514.112 kb on - strand, within yfeAat 2514.161 kb on + strand, within yfeAat 2514.223 kb on + strand, within yfeAat 2514.223 kb on - strand, within yfeAat 2514.235 kb on - strand, within yfeAat 2514.345 kb on - strand, within yfeAat 2514.345 kb on - strand, within yfeAat 2514.354 kb on + strand, within yfeAat 2514.355 kb on + strand, within yfeAat 2514.369 kb on + strand, within yfeAat 2514.396 kb on - strand, within yfeAat 2514.413 kb on + strand, within yfeAat 2514.413 kb on + strand, within yfeAat 2514.425 kb on + strand, within yfeAat 2514.428 kb on - strand, within yfeAat 2514.436 kb on + strand, within yfeAat 2514.458 kb on - strand, within yfeAat 2514.458 kb on - strand, within yfeA

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.25 vol%
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2,511,365 + nupC b2393 0.25 -0.0
2,511,504 + nupC b2393 0.37 +1.0
2,511,504 + nupC b2393 0.37 -0.0
2,511,564 + nupC b2393 0.42 -0.0
2,511,623 - nupC b2393 0.46 -1.3
2,511,623 - nupC b2393 0.46 -1.7
2,511,690 + nupC b2393 0.52 -2.4
2,511,730 - nupC b2393 0.55 -1.0
2,511,918 + nupC b2393 0.71 -1.3
2,511,930 - nupC b2393 0.72 -0.6
2,511,993 - nupC b2393 0.77 -0.8
2,511,995 + nupC b2393 0.77 -0.0
2,511,995 + nupC b2393 0.77 -2.3
2,512,099 - nupC b2393 0.86 -0.9
2,512,099 - nupC b2393 0.86 -2.8
2,512,222 - -2.9
2,512,222 - -1.2
2,512,227 - -1.5
2,512,228 + -1.3
2,512,331 - -0.6
2,512,331 - -0.0
2,513,680 - +1.0
2,513,680 - +2.0
2,513,751 - -0.0
2,513,769 + -1.5
2,513,775 + -0.2
2,514,032 - yfeA b2395 0.17 -0.6
2,514,112 - yfeA b2395 0.20 +0.5
2,514,161 + yfeA b2395 0.23 -0.4
2,514,223 + yfeA b2395 0.25 -0.0
2,514,223 - yfeA b2395 0.25 +0.0
2,514,235 - yfeA b2395 0.26 -0.2
2,514,345 - yfeA b2395 0.31 -0.6
2,514,345 - yfeA b2395 0.31 -0.0
2,514,354 + yfeA b2395 0.31 +0.6
2,514,355 + yfeA b2395 0.32 -1.8
2,514,369 + yfeA b2395 0.32 -0.8
2,514,396 - yfeA b2395 0.33 -0.6
2,514,413 + yfeA b2395 0.34 -0.6
2,514,413 + yfeA b2395 0.34 +2.6
2,514,425 + yfeA b2395 0.35 +0.5
2,514,428 - yfeA b2395 0.35 +0.4
2,514,436 + yfeA b2395 0.35 -0.5
2,514,458 - yfeA b2395 0.36 -0.4
2,514,458 - yfeA b2395 0.36 +0.5

Or see this region's nucleotide sequence