Strain Fitness in Escherichia coli BW25113 around b2388
Experiment: 2-Furfuraldehyde 0.25 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2-Furfuraldehyde 0.25 vol% |
---|---|---|---|---|---|
remove | |||||
2,505,504 | - | ypdG | b2386 | 0.67 | -0.3 |
2,505,639 | + | ypdG | b2386 | 0.78 | -0.4 |
2,505,648 | - | ypdG | b2386 | 0.78 | +0.4 |
2,505,648 | - | ypdG | b2386 | 0.78 | -0.4 |
2,505,672 | + | ypdG | b2386 | 0.80 | +0.8 |
2,505,719 | + | ypdG | b2386 | 0.84 | -0.8 |
2,505,719 | + | ypdG | b2386 | 0.84 | -1.8 |
2,505,787 | + | ypdG | b2386 | 0.90 | +1.3 |
2,505,885 | - | +0.2 | |||
2,505,919 | + | +0.6 | |||
2,505,927 | - | +0.2 | |||
2,505,927 | - | +1.0 | |||
2,505,949 | + | +1.4 | |||
2,505,954 | - | -0.3 | |||
2,505,954 | - | +1.0 | |||
2,506,086 | - | ypdH | b2387 | 0.45 | +0.4 |
2,506,086 | - | ypdH | b2387 | 0.45 | +0.3 |
2,506,096 | + | ypdH | b2387 | 0.48 | -1.3 |
2,506,129 | - | ypdH | b2387 | 0.58 | +0.1 |
2,506,201 | - | ypdH | b2387 | 0.80 | +0.1 |
2,506,212 | - | ypdH | b2387 | 0.84 | -0.1 |
2,506,219 | - | ypdH | b2387 | 0.86 | -0.4 |
2,506,225 | - | ypdH | b2387 | 0.88 | +0.2 |
2,506,225 | - | ypdH | b2387 | 0.88 | +0.1 |
2,506,286 | + | +0.8 | |||
2,506,294 | - | +0.8 | |||
2,506,370 | + | -0.9 | |||
2,506,386 | - | -0.0 | |||
2,506,393 | + | -0.1 | |||
2,506,393 | + | -0.2 | |||
2,506,428 | + | -0.8 | |||
2,506,578 | - | +0.2 | |||
2,506,646 | - | glk | b2388 | 0.17 | +0.2 |
2,506,646 | - | glk | b2388 | 0.17 | +0.5 |
2,506,731 | - | glk | b2388 | 0.26 | -0.4 |
2,506,731 | - | glk | b2388 | 0.26 | +0.7 |
2,506,780 | - | glk | b2388 | 0.31 | -0.9 |
2,506,800 | - | glk | b2388 | 0.33 | +0.3 |
2,506,861 | - | glk | b2388 | 0.39 | +0.9 |
2,506,866 | + | glk | b2388 | 0.40 | -0.8 |
2,507,004 | + | glk | b2388 | 0.54 | -0.2 |
2,507,004 | + | glk | b2388 | 0.54 | +0.3 |
2,507,022 | + | glk | b2388 | 0.56 | -0.1 |
2,507,057 | + | glk | b2388 | 0.59 | -1.0 |
2,507,185 | + | glk | b2388 | 0.73 | +0.3 |
2,507,215 | + | glk | b2388 | 0.76 | +1.7 |
2,507,333 | + | glk | b2388 | 0.88 | +0.8 |
2,507,341 | - | glk | b2388 | 0.89 | +0.2 |
2,507,341 | - | glk | b2388 | 0.89 | -0.0 |
2,507,362 | - | -1.0 | |||
2,507,362 | - | +0.3 | |||
2,507,362 | - | +1.0 | |||
2,507,392 | - | -0.0 | |||
2,507,407 | - | +1.0 | |||
2,507,448 | + | +0.5 | |||
2,507,483 | + | -0.0 | |||
2,507,493 | + | -0.6 | |||
2,507,499 | - | +0.5 | |||
2,507,506 | - | -0.2 | |||
2,507,513 | - | -1.2 | |||
2,507,540 | + | -0.0 | |||
2,507,634 | - | -1.8 | |||
2,507,634 | - | -0.0 | |||
2,507,634 | - | +0.4 | |||
2,507,803 | - | yfeO | b2389 | 0.12 | -0.3 |
2,507,805 | + | yfeO | b2389 | 0.12 | -2.0 |
2,507,835 | + | yfeO | b2389 | 0.15 | +1.0 |
2,507,883 | - | yfeO | b2389 | 0.18 | +0.6 |
2,507,883 | - | yfeO | b2389 | 0.18 | +2.0 |
2,507,901 | + | yfeO | b2389 | 0.20 | +1.0 |
2,507,904 | - | yfeO | b2389 | 0.20 | -0.5 |
2,508,013 | + | yfeO | b2389 | 0.29 | +0.8 |
2,508,302 | + | yfeO | b2389 | 0.52 | -1.0 |
2,508,328 | + | yfeO | b2389 | 0.54 | +0.4 |
2,508,368 | - | yfeO | b2389 | 0.57 | -0.6 |
2,508,377 | + | yfeO | b2389 | 0.58 | +2.0 |
2,508,377 | + | yfeO | b2389 | 0.58 | -0.7 |
2,508,377 | + | yfeO | b2389 | 0.58 | -0.3 |
Or see this region's nucleotide sequence