Strain Fitness in Escherichia coli BW25113 around b1676
Experiment: 2-Furfuraldehyde 0.25 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2-Furfuraldehyde 0.25 vol% |
---|---|---|---|---|---|
remove | |||||
1,752,920 | - | +1.4 | |||
1,752,934 | - | -0.0 | |||
1,753,041 | - | ydhZ | b1675 | 0.40 | +1.0 |
1,753,125 | - | ydhZ | b1675 | 0.80 | -0.2 |
1,753,126 | - | ydhZ | b1675 | 0.81 | +0.7 |
1,753,141 | + | ydhZ | b1675 | 0.88 | +0.7 |
1,753,300 | - | -0.7 | |||
1,753,300 | - | +1.5 | |||
1,753,313 | + | +0.4 | |||
1,753,334 | + | +0.0 | |||
1,753,334 | + | -0.8 | |||
1,753,334 | + | -0.6 | |||
1,753,342 | - | +0.9 | |||
1,753,342 | - | +1.4 | |||
1,753,342 | - | -1.3 | |||
1,753,358 | + | +0.8 | |||
1,753,500 | - | -0.6 | |||
1,753,500 | - | +0.2 | |||
1,753,563 | + | -0.5 | |||
1,753,582 | + | -0.2 | |||
1,753,615 | + | -0.2 | |||
1,753,635 | - | +0.9 | |||
1,753,696 | + | +1.5 | |||
1,753,710 | - | +2.0 | |||
1,753,710 | - | +1.1 | |||
1,753,836 | - | +1.4 | |||
1,753,836 | - | +1.8 | |||
1,753,921 | + | pykF | b1676 | 0.14 | +1.5 |
1,753,983 | + | pykF | b1676 | 0.18 | +0.8 |
1,754,072 | + | pykF | b1676 | 0.25 | +1.8 |
1,754,121 | - | pykF | b1676 | 0.28 | +2.8 |
1,754,121 | - | pykF | b1676 | 0.28 | +1.9 |
1,754,319 | - | pykF | b1676 | 0.42 | +1.0 |
1,754,319 | - | pykF | b1676 | 0.42 | +0.8 |
1,754,319 | - | pykF | b1676 | 0.42 | +1.7 |
1,754,581 | + | pykF | b1676 | 0.61 | +1.6 |
1,754,581 | + | pykF | b1676 | 0.61 | +2.4 |
1,754,992 | + | pykF | b1676 | 0.90 | +0.1 |
1,755,104 | + | +0.2 | |||
1,755,375 | + | +1.0 | |||
1,755,410 | + | +3.8 | |||
1,755,417 | + | +0.8 | |||
1,755,476 | - | lpp | b1677 | 0.13 | +0.1 |
1,755,478 | + | lpp | b1677 | 0.14 | +1.6 |
1,755,485 | + | lpp | b1677 | 0.17 | +0.9 |
1,755,576 | + | lpp | b1677 | 0.55 | -0.2 |
1,755,662 | + | +0.8 | |||
1,755,782 | - | +0.6 | |||
1,755,985 | - | ynhG | b1678 | 0.24 | +0.8 |
1,755,985 | - | ynhG | b1678 | 0.24 | +1.8 |
1,756,008 | + | ynhG | b1678 | 0.26 | -1.6 |
1,756,008 | + | ynhG | b1678 | 0.26 | -0.8 |
1,756,016 | + | ynhG | b1678 | 0.27 | +1.3 |
1,756,016 | - | ynhG | b1678 | 0.27 | +0.9 |
1,756,016 | - | ynhG | b1678 | 0.27 | +1.1 |
1,756,080 | + | ynhG | b1678 | 0.33 | -0.1 |
1,756,080 | + | ynhG | b1678 | 0.33 | -2.2 |
Or see this region's nucleotide sequence