Strain Fitness in Escherichia coli BW25113 around b1383

Experiment: 2-Furfuraldehyde 0.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydbH and ynbE overlap by 4 nucleotidesynbE and ydbL are separated by 7 nucleotidesydbL and feaR are separated by 171 nucleotides b1381: ydbH - hypothetical protein (NCBI), at 1,441,075 to 1,443,714 ydbH b1382: ynbE - predicted lipoprotein (NCBI), at 1,443,711 to 1,443,896 ynbE b1383: ydbL - orf, hypothetical protein (VIMSS), at 1,443,904 to 1,444,230 ydbL b1384: feaR - DNA-binding transcriptional dual regulator (NCBI), at 1,444,402 to 1,445,307 feaR Position (kb) 1443 1444 1445Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1442.909 kb on - strand, within ydbHat 1443.006 kb on + strand, within ydbHat 1443.047 kb on + strand, within ydbHat 1443.109 kb on - strand, within ydbHat 1443.157 kb on + strand, within ydbHat 1443.157 kb on + strand, within ydbHat 1443.157 kb on + strand, within ydbHat 1443.157 kb on + strand, within ydbHat 1443.257 kb on - strand, within ydbHat 1443.288 kb on + strand, within ydbHat 1443.288 kb on + strand, within ydbHat 1443.299 kb on - strand, within ydbHat 1443.299 kb on - strand, within ydbHat 1443.315 kb on + strand, within ydbHat 1443.315 kb on + strand, within ydbHat 1443.385 kb on + strand, within ydbHat 1443.385 kb on + strand, within ydbHat 1443.393 kb on - strand, within ydbHat 1443.414 kb on + strand, within ydbHat 1443.414 kb on + strand, within ydbHat 1443.455 kb on + strandat 1443.512 kb on - strandat 1443.522 kb on - strandat 1443.524 kb on + strandat 1443.525 kb on + strandat 1443.525 kb on + strandat 1443.532 kb on - strandat 1443.541 kb on - strandat 1443.606 kb on + strandat 1443.614 kb on + strandat 1443.622 kb on - strandat 1443.644 kb on + strandat 1443.652 kb on - strandat 1443.662 kb on - strandat 1443.662 kb on - strandat 1443.683 kb on - strandat 1443.683 kb on - strandat 1443.783 kb on + strand, within ynbEat 1443.890 kb on + strandat 1443.908 kb on + strandat 1443.951 kb on + strand, within ydbLat 1443.956 kb on + strand, within ydbLat 1443.956 kb on + strand, within ydbLat 1443.963 kb on + strand, within ydbLat 1444.102 kb on + strand, within ydbLat 1444.250 kb on + strandat 1444.250 kb on + strandat 1444.256 kb on + strandat 1444.390 kb on - strandat 1444.537 kb on - strand, within feaRat 1444.581 kb on - strand, within feaRat 1444.611 kb on - strand, within feaRat 1444.640 kb on - strand, within feaRat 1444.787 kb on - strand, within feaRat 1444.845 kb on - strand, within feaRat 1444.866 kb on - strand, within feaRat 1444.866 kb on - strand, within feaRat 1444.872 kb on - strand, within feaRat 1444.935 kb on - strand, within feaRat 1445.072 kb on + strand, within feaRat 1445.230 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.25 vol%
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1,442,909 - ydbH b1381 0.69 +0.8
1,443,006 + ydbH b1381 0.73 +1.2
1,443,047 + ydbH b1381 0.75 -0.4
1,443,109 - ydbH b1381 0.77 +0.5
1,443,157 + ydbH b1381 0.79 -0.3
1,443,157 + ydbH b1381 0.79 -0.0
1,443,157 + ydbH b1381 0.79 +0.8
1,443,157 + ydbH b1381 0.79 -0.2
1,443,257 - ydbH b1381 0.83 +0.0
1,443,288 + ydbH b1381 0.84 +1.2
1,443,288 + ydbH b1381 0.84 +1.0
1,443,299 - ydbH b1381 0.84 +0.2
1,443,299 - ydbH b1381 0.84 +0.5
1,443,315 + ydbH b1381 0.85 -0.2
1,443,315 + ydbH b1381 0.85 +1.3
1,443,385 + ydbH b1381 0.88 +0.8
1,443,385 + ydbH b1381 0.88 -2.6
1,443,393 - ydbH b1381 0.88 +0.8
1,443,414 + ydbH b1381 0.89 +0.8
1,443,414 + ydbH b1381 0.89 +0.1
1,443,455 + +0.4
1,443,512 - -0.2
1,443,522 - -0.2
1,443,524 + +0.6
1,443,525 + -1.8
1,443,525 + -2.2
1,443,532 - +0.0
1,443,541 - +0.6
1,443,606 + -0.8
1,443,614 + +2.8
1,443,622 - -0.8
1,443,644 + +0.6
1,443,652 - +0.9
1,443,662 - +1.5
1,443,662 - -1.6
1,443,683 - +1.3
1,443,683 - +0.8
1,443,783 + ynbE b1382 0.39 -2.8
1,443,890 + +0.4
1,443,908 + +0.5
1,443,951 + ydbL b1383 0.14 -0.8
1,443,956 + ydbL b1383 0.16 +0.4
1,443,956 + ydbL b1383 0.16 -0.8
1,443,963 + ydbL b1383 0.18 -0.3
1,444,102 + ydbL b1383 0.61 +0.1
1,444,250 + -1.4
1,444,250 + -0.9
1,444,256 + -0.3
1,444,390 - -0.5
1,444,537 - feaR b1384 0.15 -1.0
1,444,581 - feaR b1384 0.20 +0.4
1,444,611 - feaR b1384 0.23 +0.8
1,444,640 - feaR b1384 0.26 -0.3
1,444,787 - feaR b1384 0.42 +0.1
1,444,845 - feaR b1384 0.49 -0.8
1,444,866 - feaR b1384 0.51 -0.2
1,444,866 - feaR b1384 0.51 +0.8
1,444,872 - feaR b1384 0.52 +0.8
1,444,935 - feaR b1384 0.59 +0.1
1,445,072 + feaR b1384 0.74 -1.2
1,445,230 - +0.8

Or see this region's nucleotide sequence