Strain Fitness in Escherichia coli BW25113 around b1293

Experiment: 2-Furfuraldehyde 0.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsapD and sapC overlap by 1 nucleotidessapC and sapB overlap by 14 nucleotidessapB and sapA overlap by 4 nucleotides b1291: sapD - predicted antimicrobial peptide transporter subunit (NCBI), at 1,350,660 to 1,351,652 sapD b1292: sapC - predicted antimicrobial peptide transporter subunit (NCBI), at 1,351,652 to 1,352,542 sapC b1293: sapB - predicted antimicrobial peptide transporter subunit (NCBI), at 1,352,529 to 1,353,494 sapB b1294: sapA - predicted antimicrobial peptide transporter subunit (NCBI), at 1,353,491 to 1,355,134 sapA Position (kb) 1352 1353 1354Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 1351.739 kb on - strandat 1352.074 kb on - strand, within sapCat 1352.113 kb on + strand, within sapCat 1352.173 kb on + strand, within sapCat 1352.173 kb on + strand, within sapCat 1352.254 kb on + strand, within sapCat 1352.290 kb on - strand, within sapCat 1352.351 kb on - strand, within sapCat 1352.438 kb on + strand, within sapCat 1352.770 kb on - strand, within sapBat 1352.770 kb on - strand, within sapBat 1352.790 kb on + strand, within sapBat 1353.131 kb on + strand, within sapBat 1353.522 kb on + strandat 1353.566 kb on - strandat 1353.747 kb on + strand, within sapAat 1353.747 kb on + strand, within sapAat 1353.825 kb on + strand, within sapAat 1353.825 kb on + strand, within sapAat 1353.841 kb on + strand, within sapAat 1353.841 kb on + strand, within sapAat 1353.844 kb on - strand, within sapAat 1353.890 kb on - strand, within sapAat 1353.890 kb on - strand, within sapAat 1353.912 kb on - strand, within sapAat 1353.987 kb on + strand, within sapAat 1354.118 kb on - strand, within sapAat 1354.136 kb on + strand, within sapAat 1354.136 kb on + strand, within sapAat 1354.136 kb on + strand, within sapAat 1354.136 kb on + strand, within sapAat 1354.320 kb on - strand, within sapAat 1354.330 kb on - strand, within sapAat 1354.427 kb on - strand, within sapAat 1354.486 kb on - strand, within sapAat 1354.486 kb on - strand, within sapA

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.25 vol%
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1,351,739 - -0.2
1,352,074 - sapC b1292 0.47 +4.6
1,352,113 + sapC b1292 0.52 +3.1
1,352,173 + sapC b1292 0.58 +4.7
1,352,173 + sapC b1292 0.58 +3.1
1,352,254 + sapC b1292 0.68 +4.3
1,352,290 - sapC b1292 0.72 +2.8
1,352,351 - sapC b1292 0.78 +3.4
1,352,438 + sapC b1292 0.88 +2.8
1,352,770 - sapB b1293 0.25 +3.1
1,352,770 - sapB b1293 0.25 +4.7
1,352,790 + sapB b1293 0.27 +4.9
1,353,131 + sapB b1293 0.62 +2.6
1,353,522 + +2.9
1,353,566 - -1.0
1,353,747 + sapA b1294 0.16 +1.8
1,353,747 + sapA b1294 0.16 +3.1
1,353,825 + sapA b1294 0.20 +3.2
1,353,825 + sapA b1294 0.20 +2.0
1,353,841 + sapA b1294 0.21 +4.3
1,353,841 + sapA b1294 0.21 +3.1
1,353,844 - sapA b1294 0.21 +1.4
1,353,890 - sapA b1294 0.24 +0.4
1,353,890 - sapA b1294 0.24 -0.2
1,353,912 - sapA b1294 0.26 +0.2
1,353,987 + sapA b1294 0.30 +2.1
1,354,118 - sapA b1294 0.38 -1.1
1,354,136 + sapA b1294 0.39 +2.6
1,354,136 + sapA b1294 0.39 +3.1
1,354,136 + sapA b1294 0.39 +2.5
1,354,136 + sapA b1294 0.39 +2.2
1,354,320 - sapA b1294 0.50 +0.8
1,354,330 - sapA b1294 0.51 -0.9
1,354,427 - sapA b1294 0.57 +0.0
1,354,486 - sapA b1294 0.61 +1.1
1,354,486 - sapA b1294 0.61 +0.8

Or see this region's nucleotide sequence