Strain Fitness in Escherichia coli BW25113 around b0685

Experiment: 2-Furfuraldehyde 0.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfur and uof overlap by 8 nucleotidesuof and fldA are separated by 209 nucleotidesfldA and ybfE are separated by 139 nucleotidesybfE and ybfF are separated by 139 nucleotides b0683: fur - ferric uptake regulator (NCBI), at 709,423 to 709,869 fur b4637: uof - ryhB-regulated fur leader peptide (RefSeq), at 709,862 to 709,948 uof b0684: fldA - flavodoxin 1 (NCBI), at 710,158 to 710,688 fldA b0685: ybfE - orf, hypothetical protein (VIMSS), at 710,828 to 711,121 ybfE b0686: ybfF - hypothetical protein (NCBI), at 711,261 to 712,025 ybfF Position (kb) 710 711 712Strain fitness (log2 ratio) -1 0 1 2 3 4at 709.861 kb on - strandat 710.067 kb on - strandat 710.080 kb on + strandat 710.148 kb on - strandat 710.148 kb on - strandat 710.163 kb on - strandat 710.751 kb on + strandat 710.780 kb on - strandat 710.780 kb on - strandat 710.787 kb on + strandat 710.798 kb on + strandat 710.805 kb on - strandat 710.805 kb on - strandat 710.807 kb on + strandat 710.901 kb on + strand, within ybfEat 710.924 kb on + strand, within ybfEat 710.924 kb on + strand, within ybfEat 711.159 kb on - strandat 711.400 kb on - strand, within ybfFat 711.569 kb on + strand, within ybfFat 711.668 kb on - strand, within ybfFat 711.685 kb on + strand, within ybfFat 711.728 kb on - strand, within ybfFat 711.730 kb on - strand, within ybfFat 711.730 kb on - strand, within ybfFat 711.803 kb on - strand, within ybfFat 711.803 kb on - strand, within ybfFat 711.900 kb on - strand, within ybfFat 711.923 kb on + strand, within ybfFat 711.923 kb on + strand, within ybfFat 711.933 kb on + strand, within ybfFat 712.060 kb on + strandat 712.077 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.25 vol%
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709,861 - -0.2
710,067 - -0.5
710,080 + +0.2
710,148 - +0.2
710,148 - -0.8
710,163 - +0.1
710,751 + +0.4
710,780 - +1.7
710,780 - +1.1
710,787 + +1.6
710,798 + +3.5
710,805 - +1.8
710,805 - +2.0
710,807 + +3.3
710,901 + ybfE b0685 0.25 +3.8
710,924 + ybfE b0685 0.33 +4.2
710,924 + ybfE b0685 0.33 +3.7
711,159 - +1.6
711,400 - ybfF b0686 0.18 +0.2
711,569 + ybfF b0686 0.40 +1.8
711,668 - ybfF b0686 0.53 -0.0
711,685 + ybfF b0686 0.55 +1.0
711,728 - ybfF b0686 0.61 -0.3
711,730 - ybfF b0686 0.61 -0.8
711,730 - ybfF b0686 0.61 -1.0
711,803 - ybfF b0686 0.71 +1.4
711,803 - ybfF b0686 0.71 +1.3
711,900 - ybfF b0686 0.84 +0.8
711,923 + ybfF b0686 0.87 +2.7
711,923 + ybfF b0686 0.87 +2.0
711,933 + ybfF b0686 0.88 +2.6
712,060 + +1.7
712,077 + -0.0

Or see this region's nucleotide sequence