Strain Fitness in Escherichia coli BW25113 around b0641

Experiment: 2-Furfuraldehyde 0.25 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntholA and rlpB overlap by 1 nucleotidesrlpB and leuS are separated by 14 nucleotides b0640: holA - DNA polymerase III subunit delta (NCBI), at 669,797 to 670,828 holA b0641: rlpB - minor lipoprotein (NCBI), at 670,828 to 671,409 rlpB b0642: leuS - leucyl-tRNA synthetase (NCBI), at 671,424 to 674,006 leuS Position (kb) 670 671 672Strain fitness (log2 ratio) -3 -2 -1 0 1at 669.852 kb on + strandat 670.785 kb on + strandat 670.837 kb on - strandat 670.880 kb on - strandat 670.915 kb on - strand, within rlpBat 670.922 kb on - strand, within rlpBat 671.394 kb on - strandat 671.404 kb on - strandat 671.404 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.25 vol%
remove
669,852 + -3.7
670,785 + -2.0
670,837 - -2.3
670,880 - +1.0
670,915 - rlpB b0641 0.15 -2.9
670,922 - rlpB b0641 0.16 -0.0
671,394 - -2.0
671,404 - -0.5
671,404 - -1.3

Or see this region's nucleotide sequence