Experiment: 2-Furfuraldehyde 0.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt caiE and caiD are separated by 5 nucleotides caiD and caiC are separated by 108 nucleotides caiC and caiB are separated by 73 nucleotides
b0035: caiE - possible synthesis of cofactor for carnitine racemase and dehydratase (VIMSS), at 34,781 to 35,371
caiE
b0036: caiD - crotonobetainyl CoA hydratase (RefSeq), at 35,377 to 36,162
caiD
b0037: caiC - predicted crotonobetaine CoA ligase:carnitine CoA ligase (RefSeq), at 36,271 to 37,824
caiC
b0038: caiB - crotonobetainyl-CoA:carnitineCoA-transferase (NCBI), at 37,898 to 39,115
caiB
Position (kb) 36
37
38 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 35.272 kb on - strand, within caiE at 35.312 kb on - strand, within caiE at 35.312 kb on - strand, within caiE at 35.312 kb on - strand, within caiE at 35.349 kb on - strand at 35.428 kb on + strand at 35.467 kb on - strand, within caiD at 35.501 kb on + strand, within caiD at 35.618 kb on - strand, within caiD at 35.640 kb on - strand, within caiD at 35.731 kb on + strand, within caiD at 35.743 kb on + strand, within caiD at 35.857 kb on + strand, within caiD at 35.907 kb on - strand, within caiD at 35.924 kb on - strand, within caiD at 35.924 kb on - strand, within caiD at 35.935 kb on - strand, within caiD at 35.937 kb on + strand, within caiD at 35.937 kb on + strand, within caiD at 35.940 kb on + strand, within caiD at 35.941 kb on - strand, within caiD at 35.963 kb on + strand, within caiD at 35.989 kb on + strand, within caiD at 35.989 kb on - strand, within caiD at 35.989 kb on - strand, within caiD at 35.994 kb on + strand, within caiD at 35.994 kb on - strand, within caiD at 36.004 kb on + strand, within caiD at 36.014 kb on - strand, within caiD at 36.046 kb on + strand, within caiD at 36.052 kb on + strand, within caiD at 36.089 kb on - strand at 36.104 kb on - strand at 36.139 kb on + strand at 36.139 kb on + strand at 36.147 kb on - strand at 36.150 kb on + strand at 36.158 kb on - strand at 36.191 kb on + strand at 36.191 kb on + strand at 36.203 kb on - strand at 36.203 kb on - strand at 36.249 kb on + strand at 36.254 kb on + strand at 36.257 kb on - strand at 36.326 kb on - strand at 36.330 kb on + strand at 36.339 kb on - strand at 36.339 kb on - strand at 36.344 kb on - strand at 36.405 kb on - strand at 36.405 kb on - strand at 36.405 kb on - strand at 36.406 kb on - strand at 36.410 kb on + strand at 36.418 kb on - strand at 36.418 kb on - strand at 36.423 kb on - strand at 36.428 kb on - strand, within caiC at 36.431 kb on + strand, within caiC at 36.441 kb on + strand, within caiC at 36.453 kb on - strand, within caiC at 36.456 kb on + strand, within caiC at 36.460 kb on - strand, within caiC at 36.471 kb on + strand, within caiC at 36.471 kb on + strand, within caiC at 36.522 kb on - strand, within caiC at 36.522 kb on - strand, within caiC at 36.530 kb on - strand, within caiC at 36.530 kb on - strand, within caiC at 36.532 kb on - strand, within caiC at 36.532 kb on - strand, within caiC at 36.542 kb on - strand, within caiC at 36.542 kb on - strand, within caiC at 36.555 kb on - strand, within caiC at 36.565 kb on - strand, within caiC at 36.565 kb on - strand, within caiC at 36.576 kb on - strand, within caiC at 36.576 kb on - strand, within caiC at 36.609 kb on - strand, within caiC at 36.612 kb on - strand, within caiC at 36.612 kb on - strand, within caiC at 36.620 kb on + strand, within caiC at 36.628 kb on - strand, within caiC at 36.628 kb on - strand, within caiC at 36.666 kb on - strand, within caiC at 36.673 kb on - strand, within caiC at 36.759 kb on - strand, within caiC at 36.759 kb on - strand, within caiC at 36.888 kb on + strand, within caiC at 36.888 kb on + strand, within caiC at 36.924 kb on + strand, within caiC at 37.130 kb on + strand, within caiC at 37.155 kb on + strand, within caiC at 37.196 kb on + strand, within caiC at 37.219 kb on - strand, within caiC at 37.338 kb on - strand, within caiC at 37.460 kb on - strand, within caiC at 37.460 kb on - strand, within caiC at 37.463 kb on + strand, within caiC at 37.463 kb on + strand, within caiC at 37.480 kb on + strand, within caiC at 37.497 kb on + strand, within caiC at 37.534 kb on - strand, within caiC at 37.612 kb on + strand, within caiC at 37.623 kb on + strand, within caiC at 37.623 kb on + strand, within caiC at 37.634 kb on - strand, within caiC at 37.634 kb on - strand, within caiC at 37.985 kb on + strand at 37.993 kb on - strand at 37.993 kb on - strand at 38.049 kb on + strand, within caiB at 38.059 kb on - strand, within caiB at 38.098 kb on - strand, within caiB at 38.109 kb on + strand, within caiB at 38.143 kb on - strand, within caiB at 38.144 kb on + strand, within caiB at 38.144 kb on + strand, within caiB at 38.197 kb on - strand, within caiB at 38.197 kb on - strand, within caiB at 38.242 kb on + strand, within caiB at 38.279 kb on - strand, within caiB at 38.279 kb on - strand, within caiB at 38.286 kb on - strand, within caiB at 38.314 kb on + strand, within caiB at 38.325 kb on - strand, within caiB at 38.340 kb on - strand, within caiB at 38.361 kb on - strand, within caiB at 38.361 kb on - strand, within caiB at 38.368 kb on + strand, within caiB at 38.368 kb on - strand, within caiB at 38.372 kb on + strand, within caiB at 38.394 kb on + strand, within caiB at 38.428 kb on - strand, within caiB at 38.482 kb on - strand, within caiB at 38.494 kb on - strand, within caiB at 38.516 kb on - strand, within caiB at 38.564 kb on - strand, within caiB at 38.599 kb on - strand, within caiB at 38.699 kb on - strand, within caiB at 38.724 kb on + strand, within caiB at 38.732 kb on - strand, within caiB at 38.732 kb on - strand, within caiB at 38.771 kb on + strand, within caiB at 38.771 kb on + strand, within caiB
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.25 vol% remove 35,272 - caiE b0035 0.83 +0.3 35,312 - caiE b0035 0.90 +0.0 35,312 - caiE b0035 0.90 -0.6 35,312 - caiE b0035 0.90 -0.2 35,349 - +0.2 35,428 + -0.7 35,467 - caiD b0036 0.11 -0.6 35,501 + caiD b0036 0.16 -0.0 35,618 - caiD b0036 0.31 -0.1 35,640 - caiD b0036 0.33 +0.3 35,731 + caiD b0036 0.45 +1.0 35,743 + caiD b0036 0.47 +0.8 35,857 + caiD b0036 0.61 -0.9 35,907 - caiD b0036 0.67 -0.6 35,924 - caiD b0036 0.70 -1.4 35,924 - caiD b0036 0.70 -0.2 35,935 - caiD b0036 0.71 +0.4 35,937 + caiD b0036 0.71 -0.0 35,937 + caiD b0036 0.71 +1.0 35,940 + caiD b0036 0.72 +1.5 35,941 - caiD b0036 0.72 -0.5 35,963 + caiD b0036 0.75 +0.7 35,989 + caiD b0036 0.78 +1.0 35,989 - caiD b0036 0.78 +0.8 35,989 - caiD b0036 0.78 -0.4 35,994 + caiD b0036 0.78 +1.0 35,994 - caiD b0036 0.78 -0.0 36,004 + caiD b0036 0.80 +0.1 36,014 - caiD b0036 0.81 -1.5 36,046 + caiD b0036 0.85 -0.9 36,052 + caiD b0036 0.86 -0.3 36,089 - +0.6 36,104 - +1.5 36,139 + +0.4 36,139 + +0.5 36,147 - -0.1 36,150 + -0.9 36,158 - -0.3 36,191 + -0.2 36,191 + +1.8 36,203 - +0.8 36,203 - -0.0 36,249 + +0.2 36,254 + +1.5 36,257 - -0.5 36,326 - +0.8 36,330 + +0.6 36,339 - +0.2 36,339 - +1.5 36,344 - -0.4 36,405 - +0.3 36,405 - -0.8 36,405 - -1.0 36,406 - -0.6 36,410 + +0.3 36,418 - -0.2 36,418 - +1.0 36,423 - +0.6 36,428 - caiC b0037 0.10 +1.0 36,431 + caiC b0037 0.10 +0.7 36,441 + caiC b0037 0.11 -0.9 36,453 - caiC b0037 0.12 -0.8 36,456 + caiC b0037 0.12 +0.4 36,460 - caiC b0037 0.12 +0.4 36,471 + caiC b0037 0.13 -1.9 36,471 + caiC b0037 0.13 -0.9 36,522 - caiC b0037 0.16 -0.6 36,522 - caiC b0037 0.16 -2.0 36,530 - caiC b0037 0.17 -0.2 36,530 - caiC b0037 0.17 -2.0 36,532 - caiC b0037 0.17 -1.5 36,532 - caiC b0037 0.17 +0.4 36,542 - caiC b0037 0.17 +1.0 36,542 - caiC b0037 0.17 -0.2 36,555 - caiC b0037 0.18 -0.5 36,565 - caiC b0037 0.19 -0.3 36,565 - caiC b0037 0.19 -2.0 36,576 - caiC b0037 0.20 -0.0 36,576 - caiC b0037 0.20 +0.1 36,609 - caiC b0037 0.22 -0.9 36,612 - caiC b0037 0.22 -0.2 36,612 - caiC b0037 0.22 +0.6 36,620 + caiC b0037 0.22 -1.0 36,628 - caiC b0037 0.23 -0.5 36,628 - caiC b0037 0.23 +1.0 36,666 - caiC b0037 0.25 +0.3 36,673 - caiC b0037 0.26 -0.8 36,759 - caiC b0037 0.31 -0.0 36,759 - caiC b0037 0.31 -0.1 36,888 + caiC b0037 0.40 -0.0 36,888 + caiC b0037 0.40 +2.3 36,924 + caiC b0037 0.42 -1.2 37,130 + caiC b0037 0.55 +0.7 37,155 + caiC b0037 0.57 -0.9 37,196 + caiC b0037 0.60 -0.7 37,219 - caiC b0037 0.61 +0.3 37,338 - caiC b0037 0.69 -0.4 37,460 - caiC b0037 0.77 -0.0 37,460 - caiC b0037 0.77 -0.5 37,463 + caiC b0037 0.77 -0.2 37,463 + caiC b0037 0.77 +1.0 37,480 + caiC b0037 0.78 +0.4 37,497 + caiC b0037 0.79 -1.5 37,534 - caiC b0037 0.81 +0.1 37,612 + caiC b0037 0.86 -0.9 37,623 + caiC b0037 0.87 +1.0 37,623 + caiC b0037 0.87 +0.4 37,634 - caiC b0037 0.88 +0.4 37,634 - caiC b0037 0.88 -0.1 37,985 + +0.3 37,993 - -0.9 37,993 - -2.0 38,049 + caiB b0038 0.12 +0.8 38,059 - caiB b0038 0.13 +0.3 38,098 - caiB b0038 0.16 +0.6 38,109 + caiB b0038 0.17 -1.2 38,143 - caiB b0038 0.20 -0.3 38,144 + caiB b0038 0.20 +0.0 38,144 + caiB b0038 0.20 +0.0 38,197 - caiB b0038 0.25 -0.3 38,197 - caiB b0038 0.25 -0.6 38,242 + caiB b0038 0.28 -0.2 38,279 - caiB b0038 0.31 +0.1 38,279 - caiB b0038 0.31 +0.7 38,286 - caiB b0038 0.32 +0.6 38,314 + caiB b0038 0.34 +0.2 38,325 - caiB b0038 0.35 -0.6 38,340 - caiB b0038 0.36 +0.5 38,361 - caiB b0038 0.38 +0.7 38,361 - caiB b0038 0.38 -1.0 38,368 + caiB b0038 0.39 -0.6 38,368 - caiB b0038 0.39 -0.1 38,372 + caiB b0038 0.39 +0.3 38,394 + caiB b0038 0.41 +1.2 38,428 - caiB b0038 0.44 +0.2 38,482 - caiB b0038 0.48 -0.2 38,494 - caiB b0038 0.49 -0.2 38,516 - caiB b0038 0.51 -0.3 38,564 - caiB b0038 0.55 -0.1 38,599 - caiB b0038 0.58 -0.7 38,699 - caiB b0038 0.66 -1.2 38,724 + caiB b0038 0.68 -1.4 38,732 - caiB b0038 0.68 -0.5 38,732 - caiB b0038 0.68 -0.4 38,771 + caiB b0038 0.72 +3.0 38,771 + caiB b0038 0.72 -1.5
Or see this region's nucleotide sequence