Strain Fitness in Pseudomonas sp. RS175 around PFR28_04615

Experiment: Betaine (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Betaine (C) 2.5 mM
5,268,515	+		PFR28_04614	0.86	-3.5
5,268,515	+		PFR28_04614	0.86	+0.1
5,268,515	+		PFR28_04614	0.86	+0.9
5,268,516	-		PFR28_04614	0.86	-0.2
5,268,516	-		PFR28_04614	0.86	-1.9
5,268,516	-		PFR28_04614	0.86	+1.3
5,268,516	-		PFR28_04614	0.86	+1.0
5,268,516	-		PFR28_04614	0.86	-2.0
5,268,516	-		PFR28_04614	0.86	+0.7
5,268,516	-		PFR28_04614	0.86	-2.6
5,268,516	-		PFR28_04614	0.86	-1.5
5,268,523	+		PFR28_04614	0.87	+1.7
5,268,523	+		PFR28_04614	0.87	-1.2
5,268,575	+				+0.6
5,268,576	-				-1.7
5,268,576	-				-1.9
5,268,628	-				-0.1
5,268,634	+				-0.3
5,268,634	+				-1.4
5,268,634	+				+1.4
5,268,634	+				-2.2
5,268,635	-				-0.5
5,268,635	-				-0.2
5,268,635	-				+0.3
5,268,661	-				+0.9
5,268,717	+				-1.6
5,268,717	+				-0.4
5,268,717	+				-0.7
5,268,718	-				-0.3
5,268,728	+				+0.7
5,268,728	+				-0.8
5,268,729	-				+1.4
5,268,729	-				+0.9
5,268,730	+				-2.5
5,268,730	+				-0.9
5,268,731	-				-1.1
5,268,731	-				-0.5
5,268,731	-				+1.4
5,268,731	-				-2.9
5,268,731	-				-0.6
5,268,740	+				-2.3
5,268,746	+				+0.5
5,268,746	+				+0.3
5,268,747	-				-0.4
5,268,747	-				+0.3
5,268,776	+				-1.9
5,268,859	+				+0.3
5,268,859	+				+0.0
5,268,859	+				-2.6
5,268,860	-				+0.2
5,268,860	-				+0.1
5,268,896	+				+1.1
5,269,281	+				-1.6
5,269,360	+				-0.9
5,269,361	-				+0.2
5,269,412	+		PFR28_04615	0.12	-0.9
5,269,412	+		PFR28_04615	0.12	+0.5
5,269,412	+		PFR28_04615	0.12	-0.3
5,269,413	-		PFR28_04615	0.12	-0.7
5,269,413	-		PFR28_04615	0.12	+2.4
5,269,413	-		PFR28_04615	0.12	-0.9
5,269,413	-		PFR28_04615	0.12	+0.4
5,269,413	-		PFR28_04615	0.12	-1.9
5,269,413	-		PFR28_04615	0.12	-1.0
5,269,413	-		PFR28_04615	0.12	-0.9
5,269,413	-		PFR28_04615	0.12	+0.3
5,269,413	-		PFR28_04615	0.12	-3.0
5,269,413	-		PFR28_04615	0.12	-1.5
5,269,440	+		PFR28_04615	0.13	-0.6
5,269,440	+		PFR28_04615	0.13	-0.4
5,269,441	-		PFR28_04615	0.13	-0.1
5,269,497	+		PFR28_04615	0.17	+0.7
5,269,497	+		PFR28_04615	0.17	-1.2
5,269,497	+		PFR28_04615	0.17	+1.5
5,269,498	-		PFR28_04615	0.17	-0.0
5,269,498	-		PFR28_04615	0.17	-1.1
5,269,608	+		PFR28_04615	0.23	-0.2
5,269,608	+		PFR28_04615	0.23	+0.6
5,269,609	-		PFR28_04615	0.23	+0.6
5,269,609	-		PFR28_04615	0.23	+0.4
5,269,609	-		PFR28_04615	0.23	-2.2
5,269,609	-		PFR28_04615	0.23	+0.9
5,269,609	-		PFR28_04615	0.23	-3.2
5,269,609	-		PFR28_04615	0.23	-0.5
5,269,609	-		PFR28_04615	0.23	+0.2
5,269,609	-		PFR28_04615	0.23	-1.1
5,269,712	-		PFR28_04615	0.29	+3.3
5,269,796	-		PFR28_04615	0.34	+0.3
5,269,992	-		PFR28_04615	0.45	-0.1
5,269,992	-		PFR28_04615	0.45	-0.7
5,269,992	-		PFR28_04615	0.45	-3.8
5,269,995	+		PFR28_04615	0.45	-2.7
5,269,996	-		PFR28_04615	0.45	-1.6
5,269,996	-		PFR28_04615	0.45	+0.8
5,269,996	-		PFR28_04615	0.45	+1.1
5,269,996	-		PFR28_04615	0.45	+1.9
5,269,996	-		PFR28_04615	0.45	+0.2
5,270,061	+		PFR28_04615	0.49	+1.3
5,270,077	-		PFR28_04615	0.50	-0.1
5,270,235	+		PFR28_04615	0.59	+0.3
5,270,235	+		PFR28_04615	0.59	-0.3
5,270,235	+		PFR28_04615	0.59	+0.8
5,270,235	+		PFR28_04615	0.59	+1.3
5,270,236	-		PFR28_04615	0.59	-1.6
5,270,262	+		PFR28_04615	0.61	+0.8
5,270,262	+		PFR28_04615	0.61	-0.9
5,270,262	+		PFR28_04615	0.61	-1.1
5,270,262	+		PFR28_04615	0.61	+0.4
5,270,262	+		PFR28_04615	0.61	-2.2
5,270,262	+		PFR28_04615	0.61	-1.1
5,270,262	+		PFR28_04615	0.61	+1.0
5,270,262	+		PFR28_04615	0.61	+0.4
5,270,263	-		PFR28_04615	0.61	-0.8
5,270,263	-		PFR28_04615	0.61	+0.1
5,270,263	-		PFR28_04615	0.61	-0.1
5,270,263	-		PFR28_04615	0.61	-3.3
5,270,263	-		PFR28_04615	0.61	+1.2
5,270,263	-		PFR28_04615	0.61	-0.3
5,270,263	-		PFR28_04615	0.61	-0.3
5,270,263	-		PFR28_04615	0.61	+1.3
5,270,367	+		PFR28_04615	0.67	-3.0
5,270,385	+		PFR28_04615	0.68	-1.5
5,270,385	+		PFR28_04615	0.68	-0.1
5,270,385	+		PFR28_04615	0.68	-1.5
5,270,385	+		PFR28_04615	0.68	+1.5
5,270,386	-		PFR28_04615	0.68	+1.0
5,270,386	-		PFR28_04615	0.68	+0.5
5,270,386	-		PFR28_04615	0.68	-2.4
5,270,530	+		PFR28_04615	0.76	+1.5
5,270,531	-		PFR28_04615	0.76	+0.1
5,270,682	+		PFR28_04615	0.85	+1.9
5,270,683	-		PFR28_04615	0.85	+1.0
5,270,683	-		PFR28_04615	0.85	+1.4
5,270,683	-		PFR28_04615	0.85	+0.1
5,270,683	-		PFR28_04615	0.85	+0.6
5,270,703	+		PFR28_04615	0.86	-0.2
5,270,704	-		PFR28_04615	0.86	-0.9
5,270,889	+				-0.1
5,270,889	+				+1.4
5,270,889	+				+1.2
5,270,890	-				-1.6
5,270,890	-				-3.8
5,271,063	+				-0.8
5,271,063	+				-2.7
5,271,063	+				-0.5
5,271,064	-				+1.1
5,271,064	-				-3.4
5,271,064	-				-0.1
5,271,064	-				+0.2
5,271,064	-				+1.0
5,271,064	-				+0.2
5,271,064	-				-0.1
5,271,064	-				+1.4
5,271,064	-				-0.0
5,271,064	-				-0.2
5,271,064	-				+2.0
5,271,064	-				+0.3
5,271,067	+				+1.5
5,271,067	+				+0.1
5,271,067	+				+0.7
5,271,067	+				-2.1
5,271,067	+				-0.1
5,271,067	+				-0.9
5,271,067	+				-0.8
5,271,067	+				+0.9
5,271,067	+				+2.0
5,271,067	+				+0.2
5,271,067	+				-0.3
5,271,067	+				-1.9
5,271,067	+				-1.3
5,271,067	+				-1.5
5,271,067	+				-1.6
5,271,067	+				+1.7
5,271,067	+				-1.6
5,271,067	+				-1.1
5,271,067	+				-0.6
5,271,067	+				-0.2
5,271,067	+				+0.3
5,271,067	+				-2.2
5,271,067	+				-2.6
5,271,068	-				+0.3
5,271,068	-				+0.7
5,271,068	-				+0.9
5,271,068	-				+0.6
5,271,068	-				-1.4
5,271,068	-				+0.2
5,271,068	-				+0.6
5,271,068	-				+1.6
5,271,068	-				-1.0
5,271,068	-				-3.3
5,271,068	-				-2.3
5,271,068	-				-0.2
5,271,068	-				-1.5
5,271,068	-				+0.6
5,271,068	-				+1.4
5,271,068	-				+1.7
5,271,068	-				-3.5
5,271,068	-				+1.8
5,271,068	-				-1.2
5,271,068	-				-4.1
5,271,068	-				-0.5
5,271,163	+				-1.1
5,271,163	+				-1.6
5,271,163	+				-2.3
5,271,164	-				-0.9
5,271,174	+				-1.7
5,271,420	+		PFR28_04616	0.12	-1.3
5,271,421	-		PFR28_04616	0.12	-0.4
5,271,466	+		PFR28_04616	0.14	+0.5
5,271,467	-		PFR28_04616	0.14	-2.9
5,271,467	-		PFR28_04616	0.14	-0.9
5,271,478	+		PFR28_04616	0.14	-2.2
5,271,478	+		PFR28_04616	0.14	-2.6
5,271,479	-		PFR28_04616	0.14	+0.0
5,271,479	-		PFR28_04616	0.14	+0.4
5,271,479	-		PFR28_04616	0.14	+1.3
5,271,515	+		PFR28_04616	0.16	-1.6
5,271,543	-		PFR28_04616	0.17	-0.6
5,271,603	-		PFR28_04616	0.20	+0.5
5,271,603	-		PFR28_04616	0.20	+1.0
5,271,660	+		PFR28_04616	0.23	+1.7
5,271,661	-		PFR28_04616	0.23	+0.0
5,271,661	-		PFR28_04616	0.23	+0.4
5,271,768	+		PFR28_04616	0.28	+0.5
5,271,768	+		PFR28_04616	0.28	-2.4
5,271,768	+		PFR28_04616	0.28	-1.6
5,271,768	+		PFR28_04616	0.28	+0.4
5,271,769	-		PFR28_04616	0.28	+1.1
5,271,769	-		PFR28_04616	0.28	+0.2
5,271,769	-		PFR28_04616	0.28	-0.1
5,271,882	+		PFR28_04616	0.33	-0.1
5,271,882	+		PFR28_04616	0.33	-1.2
5,271,882	+		PFR28_04616	0.33	+0.3
5,271,882	+		PFR28_04616	0.33	-2.2
5,271,882	+		PFR28_04616	0.33	+2.3
5,271,882	+		PFR28_04616	0.33	-0.4
5,271,882	+		PFR28_04616	0.33	+1.0
5,271,882	+		PFR28_04616	0.33	-1.8
5,271,883	-		PFR28_04616	0.33	+0.1
5,271,883	-		PFR28_04616	0.33	-2.4
5,271,883	-		PFR28_04616	0.33	+0.8
5,271,883	-		PFR28_04616	0.33	-0.7
5,271,883	-		PFR28_04616	0.33	-2.3